Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
a2ef9efc by Andreas Tille at 2021-01-01T13:45:21+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,47 +1,46 @@
-Last-Update: Fri, 01 Jan 2021 01:42:03 +0000
+Last-Update: Fri, 01 Jan 2021 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 192 | {covid-19,imaging} |
- orthanc | 98 | {imaging,covid-19,practice} |
- orthanc-wsi | 53 | {his,covid-19,imaging,practice,laboratory,oncology} |
- gdcm | 44 | {imaging-dev} |
+ dcmtk | 187 | {covid-19,imaging} |
+ orthanc | 96 | {imaging,covid-19,practice} |
+ orthanc-wsi | 52 | {his,covid-19,imaging,practice,laboratory,oncology} |
+ gdcm | 43 | {imaging-dev} |
amide | 35 | {imaging} |
- dicom3tools | 31 | {imaging} |
- htsjdk | 29 | {bio-dev} |
- dicomscope | 27 | {imaging} |
+ dicom3tools | 30 | {imaging} |
+ dicomscope | 29 | {imaging} |
+ htsjdk | 26 | {bio-dev} |
invesalius | 21 | {imaging} |
+ dcm2niix | 20 | {imaging} |
nifticlib | 20 | {imaging} |
- dcm2niix | 19 | {imaging} |
dicomnifti | 18 | {imaging} |
- gdcm | 17 | {imaging-dev} |
- gnumed-server | 17 | {covid-19,practice} |
+ gdcm | 18 | {imaging-dev} |
+ gnumed-server | 18 | {covid-19,practice} |
odin | 17 | {imaging-dev,imaging} |
gdcm | 16 | {covid-19,imaging} |
minc-tools | 16 | {imaging} |
- king | 14 | {imaging,typesetting} |
+ king | 15 | {imaging,typesetting} |
plastimatch | 14 | {imaging} |
- adun.app | 13 | {bio} |
mia | 13 | {imaging} |
ngs-sdk | 13 | {bio-dev} |
openslide | 13 | {imaging} |
+ adun.app | 12 | {bio} |
pixelmed | 12 | {imaging} |
- vtk-dicom | 12 | {imaging} |
obitools | 11 | {bio} |
+ vtk-dicom | 11 | {imaging} |
biosig | 10 | {physics,imaging} |
librg-utils-perl | 10 | {bio} |
melting | 9 | {cloud,bio} |
bio-tradis | 8 | {bio-dev,bio} |
dicompyler | 8 | {oncology} |
+ ea-utils | 8 | {bio} |
fastlink | 8 | {bio,cloud} |
insighttoolkit4 | 8 | {imaging-dev} |
lagan | 8 | {bio} |
orthanc-webviewer | 8 | {imaging} |
bamkit | 7 | {bio,covid-19} |
biojava-live | 7 | {bio-dev} |
- ea-utils | 7 | {bio} |
multiqc | 7 | {bio,covid-19} |
- nifti2dicom | 7 | {imaging} |
prime-phylo | 7 | {bio,cloud} |
pymia | 7 | {imaging-dev} |
rambo-k | 7 | {bio} |
@@ -55,14 +54,13 @@ Last-Update: Fri, 01 Jan 2021 01:42:03 +0000
embassy-domsearch | 6 | {bio,cloud} |
jebl2 | 6 | {bio-dev} |
jellyfish1 | 6 | {bio} |
- libncl | 6 | {bio} |
mipe | 6 | {bio,cloud} |
nifti2dicom | 6 | {imaging} |
orthanc-dicomweb | 6 | {imaging,covid-19} |
phast | 6 | {bio} |
phybin | 6 | {bio} |
+ placnet | 6 | {bio} |
rdp-alignment | 6 | {bio} |
- staden | 6 | {bio} |
arden | 5 | {cloud,bio} |
assemblytics | 5 | {bio} |
bart-view | 5 | {imaging} |
@@ -72,15 +70,17 @@ Last-Update: Fri, 01 Jan 2021 01:42:03 +0000
ipig | 5 | {bio} |
lamarc | 5 | {bio} |
libminc | 5 | {imaging-dev} |
+ libncl | 5 | {bio} |
ngs-sdk | 5 | {bio-dev} |
+ nifti2dicom | 5 | {imaging} |
orthanc-postgresql | 5 | {imaging} |
phyutility | 5 | {cloud,bio} |
- placnet | 5 | {bio} |
proalign | 5 | {bio-phylogeny,bio} |
pscan-chip | 5 | {bio} |
quorum | 5 | {bio} |
runcircos-gui | 5 | {bio} |
saint | 5 | {bio} |
+ staden | 5 | {bio} |
zalign | 5 | {bio,cloud} |
anfo | 4 | {cloud,bio} |
clonalframeml | 4 | {bio,covid-19} |
@@ -95,7 +95,6 @@ Last-Update: Fri, 01 Jan 2021 01:42:03 +0000
mauve-aligner | 4 | {bio} |
orthanc-mysql | 4 | {imaging} |
pbdagcon | 4 | {bio} |
- perm | 4 | {cloud,bio} |
piler | 4 | {bio} |
prottest | 4 | {bio,bio-phylogeny} |
rdp-classifier | 4 | {bio} |
@@ -120,7 +119,7 @@ Last-Update: Fri, 01 Jan 2021 01:42:03 +0000
mhap | 3 | {bio-ngs,bio} |
microbegps | 3 | {bio} |
paraclu | 3 | {cloud,bio} |
- plasmidseeker | 3 | {bio} |
+ perm | 3 | {cloud,bio} |
qcumber | 3 | {bio} |
rtax | 3 | {bio,cloud} |
samblaster | 3 | {bio,covid-19} |
@@ -137,17 +136,18 @@ Last-Update: Fri, 01 Jan 2021 01:42:03 +0000
libmuscle | 2 | {bio-dev} |
libsbml | 2 | {bio-dev} |
opencfu | 2 | {laboratory} |
- samtools-legacy | 2 | {bio-dev} |
+ plasmidseeker | 2 | {bio} |
+ salmid | 2 | {bio} |
sift | 2 | {bio} |
suitename | 2 | {bio} |
tvc | 2 | {bio} |
bustools | 1 | {bio,covid-19} |
cat-bat | 1 | {bio,covid-19} |
+ cufflinks | 1 | {cloud,bio} |
dextractor | 1 | {covid-19,bio} |
emmax | 1 | {bio} |
htscodecs | 1 | {bio-dev,covid-19} |
libchado-perl | 1 | {bio-dev} |
- libvistaio | 1 | {imaging-dev} |
nanosv | 1 | {covid-19,bio} |
nifticlib | 1 | {imaging-dev} |
openslide | 1 | {imaging-dev} |
@@ -156,8 +156,7 @@ Last-Update: Fri, 01 Jan 2021 01:42:03 +0000
pbcopper | 1 | {bio-dev} |
pigx-rnaseq | 1 | {covid-19,bio} |
plasmidid | 1 | {bio,covid-19} |
- salmid | 1 | {bio} |
- seqan | 1 | {bio-dev} |
+ samtools-legacy | 1 | {bio-dev} |
sight | 1 | {imaging} |
skesa | 1 | {bio} |
skewer | 1 | {bio} |
@@ -177,7 +176,6 @@ Last-Update: Fri, 01 Jan 2021 01:42:03 +0000
bmtk | 0 | {psychology} |
camp | 0 | {imaging-dev} |
ctn | 0 | {imaging-dev} |
- cufflinks | 0 | {cloud,bio} |
eegdev | 0 | {imaging-dev} |
emboss-explorer | 0 | {bio} |
fis-gtm | 0 | {his} |
@@ -209,6 +207,7 @@ Last-Update: Fri, 01 Jan 2021 01:42:03 +0000
libqes | 0 | {bio-dev} |
libseqlib | 0 | {bio-dev} |
libstatgen | 0 | {bio-dev} |
+ libvistaio | 0 | {imaging-dev} |
libxdf | 0 | {imaging-dev} |
metastudent-data | 0 | {bio} |
metastudent-data-2 | 0 | {bio} |
@@ -225,12 +224,13 @@ Last-Update: Fri, 01 Jan 2021 01:42:03 +0000
pique | 0 | {bio} |
pplacer | 0 | {covid-19,bio,bio-phylogeny} |
python-bcbio-gff | 0 | {bio-dev} |
- python-seqcluster | 0 | {bio} |
python-seqcluster | 0 | {covid-19,bio-dev} |
+ python-seqcluster | 0 | {bio} |
q2-sample-classifier | 0 | {bio,bio-dev} |
resfinder-db | 0 | {bio} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
+ seqan | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
shovill | 0 | {covid-19,bio} |
simpleitk | 0 | {imaging-dev} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/a2ef9efc7f6b5e34fc508111206ae605451ef235
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/a2ef9efc7f6b5e34fc508111206ae605451ef235
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