Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
cde9cae0 by Andreas Tille at 2021-01-02T13:45:20+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,158 +1,157 @@
-Last-Update: Sat, 02 Jan 2021 01:42:04 +0000
+Last-Update: Sat, 02 Jan 2021 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
dcmtk | 187 | {covid-19,imaging} |
orthanc | 96 | {imaging,covid-19,practice} |
orthanc-wsi | 52 | {his,covid-19,imaging,practice,laboratory,oncology} |
- gdcm | 43 | {imaging-dev} |
+ gdcm | 42 | {imaging-dev} |
amide | 35 | {imaging} |
- dicom3tools | 30 | {imaging} |
dicomscope | 29 | {imaging} |
- htsjdk | 26 | {bio-dev} |
- invesalius | 21 | {imaging} |
- dcm2niix | 20 | {imaging} |
- nifticlib | 20 | {imaging} |
- dicomnifti | 18 | {imaging} |
- gdcm | 18 | {imaging-dev} |
+ dicom3tools | 28 | {imaging} |
+ htsjdk | 24 | {bio-dev} |
+ dcm2niix | 21 | {imaging} |
+ invesalius | 19 | {imaging} |
+ nifticlib | 19 | {imaging} |
gnumed-server | 18 | {covid-19,practice} |
- odin | 17 | {imaging-dev,imaging} |
+ odin | 18 | {imaging-dev,imaging} |
+ dicomnifti | 16 | {imaging} |
+ gdcm | 16 | {imaging-dev} |
gdcm | 16 | {covid-19,imaging} |
- minc-tools | 16 | {imaging} |
king | 15 | {imaging,typesetting} |
+ minc-tools | 15 | {imaging} |
plastimatch | 14 | {imaging} |
mia | 13 | {imaging} |
ngs-sdk | 13 | {bio-dev} |
openslide | 13 | {imaging} |
- adun.app | 12 | {bio} |
+ ngs-sdk | 12 | {bio-dev} |
pixelmed | 12 | {imaging} |
- obitools | 11 | {bio} |
+ adun.app | 11 | {bio} |
vtk-dicom | 11 | {imaging} |
biosig | 10 | {physics,imaging} |
- librg-utils-perl | 10 | {bio} |
+ librg-utils-perl | 9 | {bio} |
melting | 9 | {cloud,bio} |
- bio-tradis | 8 | {bio-dev,bio} |
+ obitools | 9 | {bio} |
dicompyler | 8 | {oncology} |
- ea-utils | 8 | {bio} |
- fastlink | 8 | {bio,cloud} |
insighttoolkit4 | 8 | {imaging-dev} |
- lagan | 8 | {bio} |
orthanc-webviewer | 8 | {imaging} |
- bamkit | 7 | {bio,covid-19} |
- biojava-live | 7 | {bio-dev} |
+ bio-tradis | 7 | {bio-dev,bio} |
+ ea-utils | 7 | {bio} |
+ fastlink | 7 | {bio,cloud} |
+ lagan | 7 | {bio} |
multiqc | 7 | {bio,covid-19} |
- prime-phylo | 7 | {bio,cloud} |
+ nifti2dicom | 7 | {imaging} |
pymia | 7 | {imaging-dev} |
- rambo-k | 7 | {bio} |
- seqsero | 7 | {bio} |
treeview | 7 | {bio,bio-phylogeny} |
- beast-mcmc | 6 | {bio-phylogeny,bio} |
+ bamkit | 6 | {bio,covid-19} |
+ biojava-live | 6 | {bio-dev} |
biomaj3-daemon | 6 | {bio} |
- bitseq | 6 | {bio} |
busco | 6 | {bio,covid-19} |
- canu | 6 | {bio} |
- embassy-domsearch | 6 | {bio,cloud} |
- jebl2 | 6 | {bio-dev} |
- jellyfish1 | 6 | {bio} |
mipe | 6 | {bio,cloud} |
- nifti2dicom | 6 | {imaging} |
orthanc-dicomweb | 6 | {imaging,covid-19} |
- phast | 6 | {bio} |
- phybin | 6 | {bio} |
- placnet | 6 | {bio} |
- rdp-alignment | 6 | {bio} |
- arden | 5 | {cloud,bio} |
- assemblytics | 5 | {bio} |
+ orthanc-postgresql | 6 | {imaging} |
+ prime-phylo | 6 | {bio,cloud} |
+ rambo-k | 6 | {bio} |
bart-view | 5 | {imaging} |
+ beast-mcmc | 5 | {bio-phylogeny,bio} |
biomaj3-cli | 5 | {cloud} |
- embassy-domalign | 5 | {bio,cloud} |
- ghmm | 5 | {bio} |
- ipig | 5 | {bio} |
- lamarc | 5 | {bio} |
+ bitseq | 5 | {bio} |
+ canu | 5 | {bio} |
+ embassy-domsearch | 5 | {bio,cloud} |
+ jebl2 | 5 | {bio-dev} |
+ jellyfish1 | 5 | {bio} |
libminc | 5 | {imaging-dev} |
- libncl | 5 | {bio} |
ngs-sdk | 5 | {bio-dev} |
nifti2dicom | 5 | {imaging} |
- orthanc-postgresql | 5 | {imaging} |
+ orthanc-mysql | 5 | {imaging} |
+ phast | 5 | {bio} |
+ phybin | 5 | {bio} |
phyutility | 5 | {cloud,bio} |
+ placnet | 5 | {bio} |
proalign | 5 | {bio-phylogeny,bio} |
pscan-chip | 5 | {bio} |
- quorum | 5 | {bio} |
- runcircos-gui | 5 | {bio} |
- saint | 5 | {bio} |
- staden | 5 | {bio} |
- zalign | 5 | {bio,cloud} |
+ rdp-alignment | 5 | {bio} |
+ seqsero | 5 | {bio} |
anfo | 4 | {cloud,bio} |
- clonalframeml | 4 | {bio,covid-19} |
- clonalorigin | 4 | {bio} |
- ecopcr | 4 | {bio} |
- elastix | 4 | {imaging} |
- estscan | 4 | {bio} |
- fastml | 4 | {bio} |
- jmodeltest | 4 | {bio-phylogeny,bio} |
- libpal-java | 4 | {bio-dev} |
+ arden | 4 | {cloud,bio} |
+ assemblytics | 4 | {bio} |
+ embassy-domalign | 4 | {bio,cloud} |
+ ghmm | 4 | {bio} |
+ ipig | 4 | {bio} |
+ lamarc | 4 | {bio} |
+ libncl | 4 | {bio} |
librdp-taxonomy-tree-java | 4 | {bio-dev} |
- mauve-aligner | 4 | {bio} |
- orthanc-mysql | 4 | {imaging} |
- pbdagcon | 4 | {bio} |
+ mhap | 4 | {bio-ngs,bio} |
piler | 4 | {bio} |
- prottest | 4 | {bio,bio-phylogeny} |
+ quorum | 4 | {bio} |
rdp-classifier | 4 | {bio} |
- salmon | 4 | {covid-19,bio} |
- sga | 4 | {bio} |
+ runcircos-gui | 4 | {bio} |
+ saint | 4 | {bio} |
+ samblaster | 4 | {bio,covid-19} |
sibsim4 | 4 | {bio,cloud} |
- soapaligner | 4 | {bio} |
- soapsnp | 4 | {bio} |
- spaced | 4 | {bio} |
- sprai | 4 | {bio} |
spread-phy | 4 | {bio,bio-phylogeny} |
+ staden | 4 | {bio} |
+ zalign | 4 | {bio,cloud} |
blasr | 3 | {bio,bio-ngs} |
- brig | 3 | {bio} |
+ clonalframeml | 3 | {bio,covid-19} |
+ clonalorigin | 3 | {bio} |
delly | 3 | {covid-19,bio} |
- embassy-domainatrix | 3 | {cloud,bio} |
- fsm-lite | 3 | {bio} |
+ ecopcr | 3 | {bio} |
+ elastix | 3 | {imaging} |
+ estscan | 3 | {bio} |
+ fastml | 3 | {bio} |
getdata | 3 | {bio} |
- hinge | 3 | {bio} |
+ jmodeltest | 3 | {bio-phylogeny,bio} |
libdivsufsort | 3 | {bio-dev} |
- logol | 3 | {bio} |
- metaphlan2 | 3 | {bio} |
- mhap | 3 | {bio-ngs,bio} |
- microbegps | 3 | {bio} |
+ libpal-java | 3 | {bio-dev} |
+ mauve-aligner | 3 | {bio} |
paraclu | 3 | {cloud,bio} |
- perm | 3 | {cloud,bio} |
+ pbdagcon | 3 | {bio} |
+ prottest | 3 | {bio,bio-phylogeny} |
qcumber | 3 | {bio} |
rtax | 3 | {bio,cloud} |
- samblaster | 3 | {bio,covid-19} |
- segemehl | 3 | {bio} |
+ sga | 3 | {bio} |
+ soapaligner | 3 | {bio} |
+ soapsnp | 3 | {bio} |
+ spaced | 3 | {bio} |
+ sprai | 3 | {bio} |
stacks | 3 | {bio} |
- surankco | 3 | {bio} |
- tracetuner | 3 | {bio} |
- yaha | 3 | {bio} |
blimps | 2 | {bio} |
+ brig | 2 | {bio} |
dindel | 2 | {bio} |
- gatb-core | 2 | {bio} |
+ embassy-domainatrix | 2 | {cloud,bio} |
+ fsm-lite | 2 | {bio} |
+ hinge | 2 | {bio} |
libbio-mage-utils-perl | 2 | {bio-dev} |
libctapimkt | 2 | {practice} |
libmuscle | 2 | {bio-dev} |
libsbml | 2 | {bio-dev} |
+ logol | 2 | {bio} |
+ metaphlan2 | 2 | {bio} |
+ microbegps | 2 | {bio} |
opencfu | 2 | {laboratory} |
+ perm | 2 | {cloud,bio} |
plasmidseeker | 2 | {bio} |
salmid | 2 | {bio} |
+ salmon | 2 | {covid-19,bio} |
+ segemehl | 2 | {bio} |
sift | 2 | {bio} |
suitename | 2 | {bio} |
- tvc | 2 | {bio} |
+ surankco | 2 | {bio} |
+ tracetuner | 2 | {bio} |
+ yaha | 2 | {bio} |
bustools | 1 | {bio,covid-19} |
cat-bat | 1 | {bio,covid-19} |
cufflinks | 1 | {cloud,bio} |
dextractor | 1 | {covid-19,bio} |
emmax | 1 | {bio} |
+ gatb-core | 1 | {bio} |
htscodecs | 1 | {bio-dev,covid-19} |
libchado-perl | 1 | {bio-dev} |
nanosv | 1 | {covid-19,bio} |
nifticlib | 1 | {imaging-dev} |
openslide | 1 | {imaging-dev} |
opensurgsim | 1 | {imaging-dev} |
- oscar | 1 | {tools,practice,data} |
pbcopper | 1 | {bio-dev} |
pigx-rnaseq | 1 | {covid-19,bio} |
plasmidid | 1 | {bio,covid-19} |
@@ -162,6 +161,7 @@ Last-Update: Sat, 02 Jan 2021 01:42:04 +0000
skewer | 1 | {bio} |
srf | 1 | {bio-dev} |
trace2dbest | 1 | {bio} |
+ tvc | 1 | {bio} |
vienna-rna | 1 | {covid-19,bio} |
yanagiba | 1 | {bio,covid-19} |
acedb | 0 | {bio,cloud} |
@@ -217,6 +217,7 @@ Last-Update: Sat, 02 Jan 2021 01:42:04 +0000
ncbi-vdb | 0 | {bio-dev} |
nifticlib | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
+ oscar | 0 | {tools,practice,data} |
papyrus | 0 | {imaging-dev} |
parallel-fastq-dump | 0 | {covid-19} |
pbseqlib | 0 | {bio-dev} |
@@ -224,8 +225,8 @@ Last-Update: Sat, 02 Jan 2021 01:42:04 +0000
pique | 0 | {bio} |
pplacer | 0 | {covid-19,bio,bio-phylogeny} |
python-bcbio-gff | 0 | {bio-dev} |
- python-seqcluster | 0 | {covid-19,bio-dev} |
python-seqcluster | 0 | {bio} |
+ python-seqcluster | 0 | {covid-19,bio-dev} |
q2-sample-classifier | 0 | {bio,bio-dev} |
resfinder-db | 0 | {bio} |
sambamba | 0 | {bio} |
@@ -248,5 +249,5 @@ Last-Update: Sat, 02 Jan 2021 01:42:04 +0000
orthanc-gdcm | -1 | {imaging} |
orthanc-python | -1 | {covid-19} |
sight | -1 | {imaging-dev} |
-(278 rows)
+(279 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/cde9cae0637f30166a026eecb1970ab129ccfb32
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/cde9cae0637f30166a026eecb1970ab129ccfb32
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