[med-svn] [Git][med-team/khmer][master] 6 commits: Fix autopkgtests for newer pytest: s/pyarg/pyargs/

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch master at Debian Med / khmer


Commits:
647094e8 by Michael R. Crusoe at 2021-01-04T14:15:25+01:00
Fix autopkgtests for newer pytest: s/pyarg/pyargs/

- - - - -
59838ef4 by Michael R. Crusoe at 2021-01-04T14:18:00+01:00
routine-update: Standards-Version: 4.5.1

- - - - -
39ad852d by Michael R. Crusoe at 2021-01-04T14:18:01+01:00
routine-update: debhelper-compat 13

- - - - -
7f0d97ab by Michael R. Crusoe at 2021-01-04T14:18:11+01:00
Update renamed lintian tag names in lintian overrides.

Changes-By: lintian-brush
Fixes: lintian: renamed-tag
See-also: https://lintian.debian.org/tags/renamed-tag.html

- - - - -
ef789e06 by Michael R. Crusoe at 2021-01-04T14:18:11+01:00
Replace use of deprecated $ADTTMP with $AUTOPKGTEST_TMP.

Changes-By: lintian-brush
Fixes: lintian: uses-deprecated-adttmp
See-also: https://lintian.debian.org/tags/uses-deprecated-adttmp.html

- - - - -
13591503 by Michael R. Crusoe at 2021-01-04T14:18:12+01:00
routine-update: Ready to upload to unstable

- - - - -


5 changed files:

- debian/changelog
- debian/control
- debian/khmer.lintian-overrides
- debian/tests/run-unit-test
- debian/tests/test-liboxli-dev


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,13 @@
+khmer (2.1.2+dfsg-8) unstable; urgency=medium
+
+  * Fix autopkgtests for newer pytest: s/pyarg/pyargs/
+  * Standards-Version: 4.5.1 (routine-update)
+  * debhelper-compat 13 (routine-update)
+  * Update renamed lintian tag names in lintian overrides.
+  * Replace use of deprecated $ADTTMP with $AUTOPKGTEST_TMP.
+
+ -- Michael R. Crusoe <crusoe at debian.org>  Mon, 04 Jan 2021 14:18:12 +0100
+
 khmer (2.1.2+dfsg-7) unstable; urgency=medium
 
   * Simplify autopkgtest. Closes: #955566


=====================================
debian/control
=====================================
@@ -4,7 +4,7 @@ Uploaders: Michael R. Crusoe <crusoe at debian.org>,
            Kevin Murray <spam at kdmurray.id.au>
 Section: science
 Priority: optional
-Build-Depends: debhelper-compat (= 12),
+Build-Depends: debhelper-compat (= 13),
                dh-python,
                dh-exec,
                python3-guzzle-sphinx-theme,
@@ -22,7 +22,7 @@ Build-Depends: debhelper-compat (= 12),
                libbz2-dev,
                asciidoctor,
                rdfind
-Standards-Version: 4.5.0
+Standards-Version: 4.5.1
 Vcs-Browser: https://salsa.debian.org/med-team/khmer
 Vcs-Git: https://salsa.debian.org/med-team/khmer.git
 Homepage: https://khmer.readthedocs.org


=====================================
debian/khmer.lintian-overrides
=====================================
@@ -1,12 +1,12 @@
 # The test data are provided in different compression methods intentionally to test different compression methods
 # Since they are small anyway there is no reason to work around this
-khmer: duplicated-compressed-file usr/lib/python3/dist-packages/khmer/tests/test-data/empty-file.bz2
-khmer: duplicated-compressed-file usr/lib/python3/dist-packages/khmer/tests/test-data/empty-file.gz
-khmer: duplicated-compressed-file usr/lib/python3/dist-packages/khmer/tests/test-data/goodversion-k12.ht.gz
-khmer: duplicated-compressed-file usr/lib/python3/dist-packages/khmer/tests/test-data/random-20-a.fa.bz2
-khmer: duplicated-compressed-file usr/lib/python3/dist-packages/khmer/tests/test-data/random-20-a.fa.gz
-khmer: duplicated-compressed-file usr/lib/python3/dist-packages/khmer/tests/test-data/random-20-a.fq.bz2
-khmer: duplicated-compressed-file usr/lib/python3/dist-packages/khmer/tests/test-data/random-20-a.fq.gz
-khmer: duplicated-compressed-file usr/lib/python3/dist-packages/khmer/tests/test-data/test-abund-read-2.fa.bz2
-khmer: duplicated-compressed-file usr/lib/python3/dist-packages/khmer/tests/test-data/test-abund-read-2.fa.gz
-khmer: duplicated-compressed-file usr/lib/python3/dist-packages/khmer/tests/test-data/test-empty.fa.bz2
+khmer: compressed-duplicate usr/lib/python3/dist-packages/khmer/tests/test-data/empty-file.bz2
+khmer: compressed-duplicate usr/lib/python3/dist-packages/khmer/tests/test-data/empty-file.gz
+khmer: compressed-duplicate usr/lib/python3/dist-packages/khmer/tests/test-data/goodversion-k12.ht.gz
+khmer: compressed-duplicate usr/lib/python3/dist-packages/khmer/tests/test-data/random-20-a.fa.bz2
+khmer: compressed-duplicate usr/lib/python3/dist-packages/khmer/tests/test-data/random-20-a.fa.gz
+khmer: compressed-duplicate usr/lib/python3/dist-packages/khmer/tests/test-data/random-20-a.fq.bz2
+khmer: compressed-duplicate usr/lib/python3/dist-packages/khmer/tests/test-data/random-20-a.fq.gz
+khmer: compressed-duplicate usr/lib/python3/dist-packages/khmer/tests/test-data/test-abund-read-2.fa.bz2
+khmer: compressed-duplicate usr/lib/python3/dist-packages/khmer/tests/test-data/test-abund-read-2.fa.gz
+khmer: compressed-duplicate usr/lib/python3/dist-packages/khmer/tests/test-data/test-empty.fa.bz2


=====================================
debian/tests/run-unit-test
=====================================
@@ -5,5 +5,5 @@ if [ "$AUTOPKGTEST_TMP" = "" ] ; then
 	AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
 fi
 cd "$AUTOPKGTEST_TMP"
-PATH=/usr/lib/khmer/bin/:$PATH python3 -m pytest --pyarg khmer \
+PATH=/usr/lib/khmer/bin/:$PATH python3 -m pytest --pyargs khmer \
 	-m 'not known_failing and not huge and not noroot' -q


=====================================
debian/tests/test-liboxli-dev
=====================================
@@ -1,7 +1,7 @@
 #!/bin/sh -ex
 
 pkg=khmer
-if [ "$ADTTMP" = "" ] ; then
+if [ "$AUTOPKGTEST_TMP" = "" ] ; then
   AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
 fi
 cd "$AUTOPKGTEST_TMP"



View it on GitLab: https://salsa.debian.org/med-team/khmer/-/compare/ed4b04f892fb1e19f275055fe523a304387cb7cb...1359150389fbab0ed6e9a0f554c638125fb91940

-- 
View it on GitLab: https://salsa.debian.org/med-team/khmer/-/compare/ed4b04f892fb1e19f275055fe523a304387cb7cb...1359150389fbab0ed6e9a0f554c638125fb91940
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20210104/b0578684/attachment-0001.html>