Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
9a60cf4c by Andreas Tille at 2021-01-06T13:45:25+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,116 +1,119 @@
-Last-Update: Wed, 06 Jan 2021 01:42:03 +0000
+Last-Update: Wed, 06 Jan 2021 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 186 | {covid-19,imaging} |
- orthanc | 99 | {imaging,covid-19,practice} |
- orthanc-wsi | 53 | {his,covid-19,imaging,practice,laboratory,oncology} |
+ dcmtk | 186 | {imaging,covid-19} |
+ orthanc | 96 | {covid-19,imaging,practice} |
+ orthanc-wsi | 53 | {imaging,his,laboratory,oncology,covid-19,practice} |
gdcm | 39 | {imaging-dev} |
- amide | 33 | {imaging} |
+ amide | 34 | {imaging} |
dicomscope | 29 | {imaging} |
dicom3tools | 28 | {imaging} |
- htsjdk | 22 | {bio-dev} |
- dcm2niix | 21 | {imaging} |
+ htsjdk | 24 | {bio-dev} |
+ dcm2niix | 20 | {imaging} |
invesalius | 20 | {imaging} |
nifticlib | 19 | {imaging} |
- odin | 18 | {imaging-dev,imaging} |
- gnumed-server | 17 | {covid-19,practice} |
+ odin | 18 | {imaging,imaging-dev} |
dicomnifti | 16 | {imaging} |
- gdcm | 15 | {imaging-dev} |
+ gnumed-server | 15 | {covid-19,practice} |
king | 15 | {imaging,typesetting} |
minc-tools | 15 | {imaging} |
+ gdcm | 14 | {imaging-dev} |
gdcm | 14 | {covid-19,imaging} |
plastimatch | 14 | {imaging} |
mia | 13 | {imaging} |
+ ngs-sdk | 13 | {bio-dev} |
openslide | 13 | {imaging} |
- ngs-sdk | 12 | {bio-dev} |
pixelmed | 12 | {imaging} |
- adun.app | 11 | {bio} |
ngs-sdk | 11 | {bio-dev} |
vtk-dicom | 11 | {imaging} |
+ adun.app | 10 | {bio} |
biosig | 10 | {physics,imaging} |
- melting | 9 | {cloud,bio} |
+ melting | 10 | {cloud,bio} |
obitools | 9 | {bio} |
dicompyler | 8 | {oncology} |
+ fastlink | 8 | {cloud,bio} |
librg-utils-perl | 8 | {bio} |
orthanc-webviewer | 8 | {imaging} |
- bamkit | 7 | {bio,covid-19} |
+ bamkit | 7 | {covid-19,bio} |
+ biojava-live | 7 | {bio-dev} |
bio-tradis | 7 | {bio-dev,bio} |
ea-utils | 7 | {bio} |
- fastlink | 7 | {bio,cloud} |
insighttoolkit4 | 7 | {imaging-dev} |
lagan | 7 | {bio} |
- multiqc | 7 | {bio,covid-19} |
+ multiqc | 7 | {covid-19,bio} |
nifti2dicom | 7 | {imaging} |
treeview | 7 | {bio,bio-phylogeny} |
- biojava-live | 6 | {bio-dev} |
busco | 6 | {bio,covid-19} |
+ embassy-domsearch | 6 | {cloud,bio} |
+ jebl2 | 6 | {bio-dev} |
+ ngs-sdk | 6 | {bio-dev} |
orthanc-dicomweb | 6 | {imaging,covid-19} |
orthanc-postgresql | 6 | {imaging} |
+ phyutility | 6 | {bio,cloud} |
prime-phylo | 6 | {bio,cloud} |
- pymia | 6 | {imaging-dev} |
+ proalign | 6 | {bio-phylogeny,bio} |
rambo-k | 6 | {bio} |
+ rdp-alignment | 6 | {bio} |
bart-view | 5 | {imaging} |
- beast-mcmc | 5 | {bio-phylogeny,bio} |
+ beast-mcmc | 5 | {bio,bio-phylogeny} |
biomaj3-daemon | 5 | {bio} |
bitseq | 5 | {bio} |
canu | 5 | {bio} |
- embassy-domsearch | 5 | {bio,cloud} |
- jebl2 | 5 | {bio-dev} |
+ ipig | 5 | {bio} |
jellyfish1 | 5 | {bio} |
libminc | 5 | {imaging-dev} |
- mipe | 5 | {bio,cloud} |
- ngs-sdk | 5 | {bio-dev} |
+ librdp-taxonomy-tree-java | 5 | {bio-dev} |
+ mipe | 5 | {cloud,bio} |
nifti2dicom | 5 | {imaging} |
orthanc-mysql | 5 | {imaging} |
phast | 5 | {bio} |
phybin | 5 | {bio} |
- phyutility | 5 | {cloud,bio} |
placnet | 5 | {bio} |
- proalign | 5 | {bio-phylogeny,bio} |
pscan-chip | 5 | {bio} |
- rdp-alignment | 5 | {bio} |
+ pymia | 5 | {imaging-dev} |
+ rdp-classifier | 5 | {bio} |
+ saint | 5 | {bio} |
seqsero | 5 | {bio} |
+ sibsim4 | 5 | {bio,cloud} |
+ spread-phy | 5 | {bio-phylogeny,bio} |
+ staden | 5 | {bio} |
+ zalign | 5 | {bio,cloud} |
+ anfo | 4 | {cloud,bio} |
arden | 4 | {cloud,bio} |
assemblytics | 4 | {bio} |
biomaj3-cli | 4 | {cloud} |
+ embassy-domalign | 4 | {cloud,bio} |
ghmm | 4 | {bio} |
- ipig | 4 | {bio} |
lamarc | 4 | {bio} |
libncl | 4 | {bio} |
- librdp-taxonomy-tree-java | 4 | {bio-dev} |
+ mauve-aligner | 4 | {bio} |
+ paraclu | 4 | {bio,cloud} |
piler | 4 | {bio} |
quorum | 4 | {bio} |
- rdp-classifier | 4 | {bio} |
runcircos-gui | 4 | {bio} |
- saint | 4 | {bio} |
samblaster | 4 | {bio,covid-19} |
- sibsim4 | 4 | {bio,cloud} |
- spread-phy | 4 | {bio,bio-phylogeny} |
stacks | 4 | {bio} |
- staden | 4 | {bio} |
- zalign | 4 | {bio,cloud} |
- anfo | 3 | {cloud,bio} |
- blasr | 3 | {bio,bio-ngs} |
- clonalframeml | 3 | {bio,covid-19} |
+ blasr | 3 | {bio-ngs,bio} |
+ clonalframeml | 3 | {covid-19,bio} |
clonalorigin | 3 | {bio} |
delly | 3 | {covid-19,bio} |
ecopcr | 3 | {bio} |
elastix | 3 | {imaging} |
- embassy-domalign | 3 | {bio,cloud} |
+ embassy-domainatrix | 3 | {bio,cloud} |
estscan | 3 | {bio} |
fastml | 3 | {bio} |
getdata | 3 | {bio} |
jmodeltest | 3 | {bio-phylogeny,bio} |
libdivsufsort | 3 | {bio-dev} |
libpal-java | 3 | {bio-dev} |
- mauve-aligner | 3 | {bio} |
+ libsbml | 3 | {bio-dev} |
mhap | 3 | {bio-ngs,bio} |
- paraclu | 3 | {cloud,bio} |
pbdagcon | 3 | {bio} |
+ perm | 3 | {cloud,bio} |
prottest | 3 | {bio,bio-phylogeny} |
qcumber | 3 | {bio} |
- rtax | 3 | {bio,cloud} |
+ rtax | 3 | {cloud,bio} |
salmid | 3 | {bio} |
sga | 3 | {bio} |
soapaligner | 3 | {bio} |
@@ -120,17 +123,15 @@ Last-Update: Wed, 06 Jan 2021 01:42:03 +0000
blimps | 2 | {bio} |
brig | 2 | {bio} |
dindel | 2 | {bio} |
- embassy-domainatrix | 2 | {cloud,bio} |
fsm-lite | 2 | {bio} |
+ gatb-core | 2 | {bio} |
hinge | 2 | {bio} |
libbio-mage-utils-perl | 2 | {bio-dev} |
libmuscle | 2 | {bio-dev} |
- libsbml | 2 | {bio-dev} |
logol | 2 | {bio} |
metaphlan2 | 2 | {bio} |
microbegps | 2 | {bio} |
opencfu | 2 | {laboratory} |
- perm | 2 | {cloud,bio} |
plasmidseeker | 2 | {bio} |
salmon | 2 | {covid-19,bio} |
segemehl | 2 | {bio} |
@@ -142,10 +143,8 @@ Last-Update: Wed, 06 Jan 2021 01:42:03 +0000
bustools | 1 | {bio,covid-19} |
cat-bat | 1 | {bio,covid-19} |
cufflinks | 1 | {cloud,bio} |
- dextractor | 1 | {covid-19,bio} |
+ dextractor | 1 | {bio,covid-19} |
emmax | 1 | {bio} |
- gatb-core | 1 | {bio} |
- htscodecs | 1 | {bio-dev,covid-19} |
libchado-perl | 1 | {bio-dev} |
libctapimkt | 1 | {practice} |
nanosv | 1 | {covid-19,bio} |
@@ -153,8 +152,8 @@ Last-Update: Wed, 06 Jan 2021 01:42:03 +0000
openslide | 1 | {imaging-dev} |
opensurgsim | 1 | {imaging-dev} |
pbcopper | 1 | {bio-dev} |
- pigx-rnaseq | 1 | {covid-19,bio} |
- plasmidid | 1 | {bio,covid-19} |
+ pigx-rnaseq | 1 | {bio,covid-19} |
+ plasmidid | 1 | {covid-19,bio} |
samtools-legacy | 1 | {bio-dev} |
sight | 1 | {imaging} |
skesa | 1 | {bio} |
@@ -162,15 +161,14 @@ Last-Update: Wed, 06 Jan 2021 01:42:03 +0000
srf | 1 | {bio-dev} |
trace2dbest | 1 | {bio} |
tvc | 1 | {bio} |
- vienna-rna | 1 | {covid-19,bio} |
- yanagiba | 1 | {bio,covid-19} |
+ vienna-rna | 1 | {bio,covid-19} |
+ yanagiba | 1 | {covid-19,bio} |
acedb | 0 | {bio,cloud} |
atropos | 0 | {bio} |
bambamc | 0 | {bio-dev} |
bbmap | 0 | {bio,covid-19} |
biojava4-live | 0 | {bio-dev} |
biosig | 0 | {physics} |
- biosig | 0 | {physics,imaging-dev} |
biosig | 0 | {imaging-dev,physics} |
biosyntax | 0 | {bio} |
bmtk | 0 | {psychology} |
@@ -181,7 +179,8 @@ Last-Update: Wed, 06 Jan 2021 01:42:03 +0000
fis-gtm | 0 | {his} |
gatb-core | 0 | {bio-dev} |
gifticlib | 0 | {imaging-dev} |
- intake | 0 | {bio-dev,bio} |
+ htscodecs | 0 | {covid-19,bio-dev} |
+ intake | 0 | {bio,bio-dev} |
kmerresistance | 0 | {bio} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
@@ -197,7 +196,7 @@ Last-Update: Wed, 06 Jan 2021 01:42:03 +0000
libgenome | 0 | {bio-dev} |
libgkarrays | 0 | {bio-dev} |
libhmsbeagle | 0 | {bio-dev} |
- libics | 0 | {imaging-dev,covid-19} |
+ libics | 0 | {covid-19,imaging-dev} |
libjloda-java | 0 | {bio-dev} |
libmaus2 | 0 | {covid-19,bio-dev} |
libmems | 0 | {bio-dev} |
@@ -213,7 +212,7 @@ Last-Update: Wed, 06 Jan 2021 01:42:03 +0000
metastudent-data-2 | 0 | {bio} |
mia | 0 | {imaging-dev} |
miaviewit | 0 | {imaging-dev} |
- milib | 0 | {bio-dev,covid-19} |
+ milib | 0 | {covid-19,bio-dev} |
ncbi-vdb | 0 | {bio-dev} |
nifticlib | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
@@ -223,31 +222,31 @@ Last-Update: Wed, 06 Jan 2021 01:42:03 +0000
pbseqlib | 0 | {bio-dev} |
pilercr | 0 | {bio} |
pique | 0 | {bio} |
- pplacer | 0 | {covid-19,bio,bio-phylogeny} |
+ pplacer | 0 | {bio-phylogeny,bio,covid-19} |
python-bcbio-gff | 0 | {bio-dev} |
+ python-seqcluster | 0 | {bio-dev,covid-19} |
python-seqcluster | 0 | {bio} |
- python-seqcluster | 0 | {covid-19,bio-dev} |
- q2-sample-classifier | 0 | {bio,bio-dev} |
+ q2-sample-classifier | 0 | {bio-dev,bio} |
resfinder-db | 0 | {bio} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seqan | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
- shovill | 0 | {covid-19,bio} |
+ shovill | 0 | {bio,covid-19} |
simpleitk | 0 | {imaging-dev} |
simrisc | 0 | {oncology} |
smrtanalysis | 0 | {covid-19,bio} |
- spaln | 0 | {covid-19,bio} |
+ spaln | 0 | {bio,covid-19} |
svim | 0 | {bio} |
thesias | 0 | {covid-19,bio} |
tophat-recondition | 0 | {bio,covid-19} |
varna | 0 | {bio} |
- varscan | 0 | {covid-19,bio} |
+ varscan | 0 | {bio,covid-19} |
vtk-dicom | 0 | {imaging-dev} |
xdffileio | 0 | {imaging-dev} |
mssstest | -1 | {tools} |
orthanc-gdcm | -1 | {imaging} |
orthanc-python | -1 | {covid-19} |
sight | -1 | {imaging-dev} |
-(279 rows)
+(278 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/9a60cf4cc2afb4e4719de633db0c6f8a0d6c5dfe
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/9a60cf4cc2afb4e4719de633db0c6f8a0d6c5dfe
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