Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
a003e321 by Andreas Tille at 2021-01-09T13:46:29+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,174 +1,172 @@
-Last-Update: Sat, 09 Jan 2021 01:42:03 +0000
+Last-Update: Sat, 09 Jan 2021 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 186 | {imaging,covid-19} |
+ dcmtk | 188 | {imaging,covid-19} |
orthanc | 99 | {covid-19,imaging,practice} |
orthanc-wsi | 53 | {imaging,his,laboratory,oncology,covid-19,practice} |
- gdcm | 37 | {imaging-dev} |
- amide | 32 | {imaging} |
- dicomscope | 29 | {imaging} |
- dicom3tools | 27 | {imaging} |
- htsjdk | 24 | {bio-dev} |
- dcm2niix | 20 | {imaging} |
+ gdcm | 38 | {imaging-dev} |
+ amide | 31 | {imaging} |
+ dicom3tools | 28 | {imaging} |
+ dicomscope | 28 | {imaging} |
+ htsjdk | 23 | {bio-dev} |
+ dcm2niix | 19 | {imaging} |
invesalius | 19 | {imaging} |
nifticlib | 19 | {imaging} |
- odin | 18 | {imaging,imaging-dev} |
- dicomnifti | 16 | {imaging} |
- gdcm | 16 | {covid-19,imaging} |
- gnumed-server | 16 | {covid-19,practice} |
- minc-tools | 15 | {imaging} |
+ dicomnifti | 17 | {imaging} |
+ gdcm | 17 | {covid-19,imaging} |
+ gnumed-server | 17 | {covid-19,practice} |
+ odin | 17 | {imaging,imaging-dev} |
+ minc-tools | 16 | {imaging} |
gdcm | 14 | {imaging-dev} |
- king | 14 | {imaging,typesetting} |
- plastimatch | 14 | {imaging} |
- mia | 13 | {imaging} |
+ king | 13 | {imaging,typesetting} |
openslide | 13 | {imaging} |
- ngs-sdk | 12 | {bio-dev} |
+ mia | 12 | {imaging} |
pixelmed | 12 | {imaging} |
+ plastimatch | 12 | {imaging} |
ngs-sdk | 11 | {bio-dev} |
- adun.app | 10 | {bio} |
- obitools | 10 | {bio} |
+ ngs-sdk | 10 | {bio-dev} |
vtk-dicom | 10 | {imaging} |
+ adun.app | 9 | {bio} |
biosig | 9 | {physics,imaging} |
- melting | 9 | {cloud,bio} |
+ obitools | 9 | {bio} |
orthanc-webviewer | 9 | {imaging} |
- dicompyler | 8 | {oncology} |
- fastlink | 8 | {cloud,bio} |
- librg-utils-perl | 8 | {bio} |
- bamkit | 7 | {covid-19,bio} |
- biojava-live | 7 | {bio-dev} |
- bio-tradis | 7 | {bio-dev,bio} |
- ea-utils | 7 | {bio} |
+ melting | 8 | {cloud,bio} |
+ fastlink | 7 | {cloud,bio} |
insighttoolkit4 | 7 | {imaging-dev} |
- lagan | 7 | {bio} |
- ngs-sdk | 7 | {bio-dev} |
nifti2dicom | 7 | {imaging} |
- treeview | 7 | {bio,bio-phylogeny} |
+ bamkit | 6 | {covid-19,bio} |
+ biojava-live | 6 | {bio-dev} |
+ bio-tradis | 6 | {bio-dev,bio} |
busco | 6 | {bio,covid-19} |
- embassy-domsearch | 6 | {cloud,bio} |
- jebl2 | 6 | {bio-dev} |
+ dicompyler | 6 | {oncology} |
+ ea-utils | 6 | {bio} |
+ lagan | 6 | {bio} |
+ librg-utils-perl | 6 | {bio} |
multiqc | 6 | {covid-19,bio} |
+ ngs-sdk | 6 | {bio-dev} |
orthanc-dicomweb | 6 | {imaging,covid-19} |
orthanc-postgresql | 6 | {imaging} |
- prime-phylo | 6 | {bio,cloud} |
- proalign | 6 | {bio-phylogeny,bio} |
- rambo-k | 6 | {bio} |
rdp-alignment | 6 | {bio} |
+ treeview | 6 | {bio,bio-phylogeny} |
bart-view | 5 | {imaging} |
- beast-mcmc | 5 | {bio,bio-phylogeny} |
- biomaj3-daemon | 5 | {bio} |
- bitseq | 5 | {bio} |
- canu | 5 | {bio} |
- ipig | 5 | {bio} |
- jellyfish1 | 5 | {bio} |
+ embassy-domsearch | 5 | {cloud,bio} |
+ jebl2 | 5 | {bio-dev} |
libminc | 5 | {imaging-dev} |
librdp-taxonomy-tree-java | 5 | {bio-dev} |
- mipe | 5 | {cloud,bio} |
nifti2dicom | 5 | {imaging} |
orthanc-mysql | 5 | {imaging} |
- phast | 5 | {bio} |
- phybin | 5 | {bio} |
- phyutility | 5 | {bio,cloud} |
- placnet | 5 | {bio} |
- pscan-chip | 5 | {bio} |
+ prime-phylo | 5 | {bio,cloud} |
+ proalign | 5 | {bio-phylogeny,bio} |
pymia | 5 | {imaging-dev} |
+ rambo-k | 5 | {bio} |
rdp-classifier | 5 | {bio} |
- saint | 5 | {bio} |
- seqsero | 5 | {bio} |
- sibsim4 | 5 | {bio,cloud} |
- spread-phy | 5 | {bio-phylogeny,bio} |
- staden | 5 | {bio} |
- zalign | 5 | {bio,cloud} |
- anfo | 4 | {cloud,bio} |
- arden | 4 | {cloud,bio} |
- assemblytics | 4 | {bio} |
- biomaj3-cli | 4 | {cloud} |
- embassy-domalign | 4 | {cloud,bio} |
- ghmm | 4 | {bio} |
- lamarc | 4 | {bio} |
- libncl | 4 | {bio} |
- mauve-aligner | 4 | {bio} |
- paraclu | 4 | {bio,cloud} |
- piler | 4 | {bio} |
- quorum | 4 | {bio} |
- runcircos-gui | 4 | {bio} |
- samblaster | 4 | {bio,covid-19} |
- blasr | 3 | {bio-ngs,bio} |
- clonalframeml | 3 | {covid-19,bio} |
- clonalorigin | 3 | {bio} |
- delly | 3 | {covid-19,bio} |
- ecopcr | 3 | {bio} |
+ beast-mcmc | 4 | {bio,bio-phylogeny} |
+ biomaj3-daemon | 4 | {bio} |
+ bitseq | 4 | {bio} |
+ canu | 4 | {bio} |
+ ipig | 4 | {bio} |
+ jellyfish1 | 4 | {bio} |
+ mipe | 4 | {cloud,bio} |
+ phast | 4 | {bio} |
+ phybin | 4 | {bio} |
+ phyutility | 4 | {bio,cloud} |
+ placnet | 4 | {bio} |
+ pscan-chip | 4 | {bio} |
+ saint | 4 | {bio} |
+ seqsero | 4 | {bio} |
+ sibsim4 | 4 | {bio,cloud} |
+ spread-phy | 4 | {bio-phylogeny,bio} |
+ staden | 4 | {bio} |
+ zalign | 4 | {bio,cloud} |
+ anfo | 3 | {cloud,bio} |
+ arden | 3 | {cloud,bio} |
+ assemblytics | 3 | {bio} |
+ biomaj3-cli | 3 | {cloud} |
elastix | 3 | {imaging} |
- embassy-domainatrix | 3 | {bio,cloud} |
- estscan | 3 | {bio} |
- fastml | 3 | {bio} |
+ embassy-domalign | 3 | {cloud,bio} |
getdata | 3 | {bio} |
- jmodeltest | 3 | {bio-phylogeny,bio} |
+ ghmm | 3 | {bio} |
+ lamarc | 3 | {bio} |
libdivsufsort | 3 | {bio-dev} |
- libpal-java | 3 | {bio-dev} |
+ libncl | 3 | {bio} |
libsbml | 3 | {bio-dev} |
- mhap | 3 | {bio-ngs,bio} |
- pbdagcon | 3 | {bio} |
- perm | 3 | {cloud,bio} |
- prottest | 3 | {bio,bio-phylogeny} |
- qcumber | 3 | {bio} |
- rtax | 3 | {cloud,bio} |
+ mauve-aligner | 3 | {bio} |
+ paraclu | 3 | {bio,cloud} |
+ piler | 3 | {bio} |
+ quorum | 3 | {bio} |
+ runcircos-gui | 3 | {bio} |
salmid | 3 | {bio} |
- sga | 3 | {bio} |
- soapaligner | 3 | {bio} |
+ samblaster | 3 | {bio,covid-19} |
soapsnp | 3 | {bio} |
- spaced | 3 | {bio} |
- sprai | 3 | {bio} |
- stacks | 3 | {bio} |
+ blasr | 2 | {bio-ngs,bio} |
blimps | 2 | {bio} |
- brig | 2 | {bio} |
- dindel | 2 | {bio} |
- fsm-lite | 2 | {bio} |
- gatb-core | 2 | {bio} |
- hinge | 2 | {bio} |
+ clonalframeml | 2 | {covid-19,bio} |
+ clonalorigin | 2 | {bio} |
+ delly | 2 | {covid-19,bio} |
+ ecopcr | 2 | {bio} |
+ embassy-domainatrix | 2 | {bio,cloud} |
+ estscan | 2 | {bio} |
+ fastml | 2 | {bio} |
+ jmodeltest | 2 | {bio-phylogeny,bio} |
libbio-mage-utils-perl | 2 | {bio-dev} |
libmuscle | 2 | {bio-dev} |
- logol | 2 | {bio} |
- metaphlan2 | 2 | {bio} |
- microbegps | 2 | {bio} |
- opencfu | 2 | {laboratory} |
- plasmidseeker | 2 | {bio} |
- salmon | 2 | {covid-19,bio} |
- segemehl | 2 | {bio} |
+ libpal-java | 2 | {bio-dev} |
+ mhap | 2 | {bio-ngs,bio} |
+ pbdagcon | 2 | {bio} |
+ perm | 2 | {cloud,bio} |
+ prottest | 2 | {bio,bio-phylogeny} |
+ qcumber | 2 | {bio} |
+ rtax | 2 | {cloud,bio} |
+ sga | 2 | {bio} |
sift | 2 | {bio} |
- suitename | 2 | {bio} |
- surankco | 2 | {bio} |
- tracetuner | 2 | {bio} |
- yaha | 2 | {bio} |
+ soapaligner | 2 | {bio} |
+ spaced | 2 | {bio} |
+ sprai | 2 | {bio} |
+ stacks | 2 | {bio} |
+ brig | 1 | {bio} |
bustools | 1 | {bio,covid-19} |
cat-bat | 1 | {bio,covid-19} |
cufflinks | 1 | {cloud,bio} |
dextractor | 1 | {bio,covid-19} |
+ dindel | 1 | {bio} |
emmax | 1 | {bio} |
+ fsm-lite | 1 | {bio} |
+ gatb-core | 1 | {bio} |
+ hinge | 1 | {bio} |
libchado-perl | 1 | {bio-dev} |
libctapimkt | 1 | {practice} |
+ logol | 1 | {bio} |
+ metaphlan2 | 1 | {bio} |
+ microbegps | 1 | {bio} |
nanosv | 1 | {covid-19,bio} |
nifticlib | 1 | {imaging-dev} |
+ opencfu | 1 | {laboratory} |
openslide | 1 | {imaging-dev} |
opensurgsim | 1 | {imaging-dev} |
pigx-rnaseq | 1 | {bio,covid-19} |
plasmidid | 1 | {covid-19,bio} |
+ plasmidseeker | 1 | {bio} |
+ salmon | 1 | {covid-19,bio} |
samtools-legacy | 1 | {bio-dev} |
+ segemehl | 1 | {bio} |
sight | 1 | {imaging} |
skesa | 1 | {bio} |
skewer | 1 | {bio} |
srf | 1 | {bio-dev} |
- trace2dbest | 1 | {bio} |
- tvc | 1 | {bio} |
+ suitename | 1 | {bio} |
+ surankco | 1 | {bio} |
+ tracetuner | 1 | {bio} |
vienna-rna | 1 | {bio,covid-19} |
+ yaha | 1 | {bio} |
yanagiba | 1 | {covid-19,bio} |
acedb | 0 | {bio,cloud} |
atropos | 0 | {bio} |
bambamc | 0 | {bio-dev} |
bbmap | 0 | {bio,covid-19} |
biojava4-live | 0 | {bio-dev} |
- biosig | 0 | {physics} |
biosig | 0 | {imaging-dev,physics} |
+ biosig | 0 | {physics} |
biosyntax | 0 | {bio} |
bmtk | 0 | {psychology} |
camp | 0 | {imaging-dev} |
@@ -224,8 +222,8 @@ Last-Update: Sat, 09 Jan 2021 01:42:03 +0000
pique | 0 | {bio} |
pplacer | 0 | {bio-phylogeny,bio,covid-19} |
python-bcbio-gff | 0 | {bio-dev} |
- python-seqcluster | 0 | {bio} |
python-seqcluster | 0 | {bio-dev,covid-19} |
+ python-seqcluster | 0 | {bio} |
q2-sample-classifier | 0 | {bio-dev,bio} |
resfinder-db | 0 | {bio} |
sambamba | 0 | {bio} |
@@ -240,6 +238,8 @@ Last-Update: Sat, 09 Jan 2021 01:42:03 +0000
svim | 0 | {bio} |
thesias | 0 | {covid-19,bio} |
tophat-recondition | 0 | {bio,covid-19} |
+ trace2dbest | 0 | {bio} |
+ tvc | 0 | {bio} |
varna | 0 | {bio} |
varscan | 0 | {bio,covid-19} |
vtk-dicom | 0 | {imaging-dev} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/a003e321c8a9f257d3af7e454308a7e564dea2d1
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/a003e321c8a9f257d3af7e454308a7e564dea2d1
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