Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
2c1ff87f by Andreas Tille at 2021-01-10T13:45:25+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,129 +1,126 @@
-Last-Update: Sun, 10 Jan 2021 01:42:04 +0000
+Last-Update: Sun, 10 Jan 2021 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 188 | {imaging,covid-19} |
- orthanc | 99 | {covid-19,imaging,practice} |
+ dcmtk | 190 | {imaging,covid-19} |
+ orthanc | 100 | {covid-19,imaging,practice} |
orthanc-wsi | 53 | {imaging,his,laboratory,oncology,covid-19,practice} |
gdcm | 38 | {imaging-dev} |
amide | 31 | {imaging} |
- dicom3tools | 28 | {imaging} |
- dicomscope | 28 | {imaging} |
- htsjdk | 23 | {bio-dev} |
- dcm2niix | 19 | {imaging} |
+ dicom3tools | 29 | {imaging} |
+ dicomscope | 29 | {imaging} |
+ htsjdk | 24 | {bio-dev} |
invesalius | 19 | {imaging} |
nifticlib | 19 | {imaging} |
- dicomnifti | 17 | {imaging} |
- gdcm | 17 | {covid-19,imaging} |
- gnumed-server | 17 | {covid-19,practice} |
- odin | 17 | {imaging,imaging-dev} |
- minc-tools | 16 | {imaging} |
- gdcm | 14 | {imaging-dev} |
- king | 13 | {imaging,typesetting} |
- openslide | 13 | {imaging} |
- mia | 12 | {imaging} |
- pixelmed | 12 | {imaging} |
+ dcm2niix | 18 | {imaging} |
+ gnumed-server | 18 | {covid-19,practice} |
+ odin | 18 | {imaging,imaging-dev} |
+ gdcm | 16 | {covid-19,imaging} |
+ dicomnifti | 15 | {imaging} |
+ gdcm | 15 | {imaging-dev} |
+ minc-tools | 14 | {imaging} |
+ pixelmed | 13 | {imaging} |
+ king | 12 | {imaging,typesetting} |
+ openslide | 12 | {imaging} |
plastimatch | 12 | {imaging} |
+ mia | 11 | {imaging} |
ngs-sdk | 11 | {bio-dev} |
+ insighttoolkit4 | 10 | {imaging-dev} |
ngs-sdk | 10 | {bio-dev} |
vtk-dicom | 10 | {imaging} |
- adun.app | 9 | {bio} |
biosig | 9 | {physics,imaging} |
- obitools | 9 | {bio} |
orthanc-webviewer | 9 | {imaging} |
- melting | 8 | {cloud,bio} |
+ adun.app | 8 | {bio} |
+ obitools | 8 | {bio} |
+ bamkit | 7 | {covid-19,bio} |
fastlink | 7 | {cloud,bio} |
- insighttoolkit4 | 7 | {imaging-dev} |
+ melting | 7 | {cloud,bio} |
nifti2dicom | 7 | {imaging} |
- bamkit | 6 | {covid-19,bio} |
biojava-live | 6 | {bio-dev} |
bio-tradis | 6 | {bio-dev,bio} |
busco | 6 | {bio,covid-19} |
dicompyler | 6 | {oncology} |
ea-utils | 6 | {bio} |
- lagan | 6 | {bio} |
- librg-utils-perl | 6 | {bio} |
- multiqc | 6 | {covid-19,bio} |
- ngs-sdk | 6 | {bio-dev} |
+ libminc | 6 | {imaging-dev} |
orthanc-dicomweb | 6 | {imaging,covid-19} |
orthanc-postgresql | 6 | {imaging} |
- rdp-alignment | 6 | {bio} |
+ pymia | 6 | {imaging-dev} |
treeview | 6 | {bio,bio-phylogeny} |
bart-view | 5 | {imaging} |
embassy-domsearch | 5 | {cloud,bio} |
jebl2 | 5 | {bio-dev} |
- libminc | 5 | {imaging-dev} |
- librdp-taxonomy-tree-java | 5 | {bio-dev} |
+ lagan | 5 | {bio} |
+ librg-utils-perl | 5 | {bio} |
+ ngs-sdk | 5 | {bio-dev} |
nifti2dicom | 5 | {imaging} |
orthanc-mysql | 5 | {imaging} |
- prime-phylo | 5 | {bio,cloud} |
- proalign | 5 | {bio-phylogeny,bio} |
- pymia | 5 | {imaging-dev} |
rambo-k | 5 | {bio} |
- rdp-classifier | 5 | {bio} |
beast-mcmc | 4 | {bio,bio-phylogeny} |
biomaj3-daemon | 4 | {bio} |
- bitseq | 4 | {bio} |
canu | 4 | {bio} |
+ embassy-domalign | 4 | {cloud,bio} |
ipig | 4 | {bio} |
jellyfish1 | 4 | {bio} |
mipe | 4 | {cloud,bio} |
- phast | 4 | {bio} |
- phybin | 4 | {bio} |
- phyutility | 4 | {bio,cloud} |
- placnet | 4 | {bio} |
- pscan-chip | 4 | {bio} |
+ multiqc | 4 | {covid-19,bio} |
+ prime-phylo | 4 | {bio,cloud} |
+ proalign | 4 | {bio-phylogeny,bio} |
+ rdp-alignment | 4 | {bio} |
saint | 4 | {bio} |
seqsero | 4 | {bio} |
sibsim4 | 4 | {bio,cloud} |
spread-phy | 4 | {bio-phylogeny,bio} |
- staden | 4 | {bio} |
- zalign | 4 | {bio,cloud} |
anfo | 3 | {cloud,bio} |
arden | 3 | {cloud,bio} |
assemblytics | 3 | {bio} |
biomaj3-cli | 3 | {cloud} |
+ bitseq | 3 | {bio} |
+ clonalorigin | 3 | {bio} |
elastix | 3 | {imaging} |
- embassy-domalign | 3 | {cloud,bio} |
getdata | 3 | {bio} |
- ghmm | 3 | {bio} |
lamarc | 3 | {bio} |
libdivsufsort | 3 | {bio-dev} |
libncl | 3 | {bio} |
+ librdp-taxonomy-tree-java | 3 | {bio-dev} |
libsbml | 3 | {bio-dev} |
mauve-aligner | 3 | {bio} |
- paraclu | 3 | {bio,cloud} |
- piler | 3 | {bio} |
- quorum | 3 | {bio} |
+ phast | 3 | {bio} |
+ phybin | 3 | {bio} |
+ phyutility | 3 | {bio,cloud} |
+ placnet | 3 | {bio} |
+ pscan-chip | 3 | {bio} |
+ rdp-classifier | 3 | {bio} |
runcircos-gui | 3 | {bio} |
salmid | 3 | {bio} |
samblaster | 3 | {bio,covid-19} |
- soapsnp | 3 | {bio} |
+ stacks | 3 | {bio} |
+ staden | 3 | {bio} |
+ zalign | 3 | {bio,cloud} |
blasr | 2 | {bio-ngs,bio} |
blimps | 2 | {bio} |
clonalframeml | 2 | {covid-19,bio} |
- clonalorigin | 2 | {bio} |
delly | 2 | {covid-19,bio} |
ecopcr | 2 | {bio} |
embassy-domainatrix | 2 | {bio,cloud} |
- estscan | 2 | {bio} |
fastml | 2 | {bio} |
+ ghmm | 2 | {bio} |
jmodeltest | 2 | {bio-phylogeny,bio} |
libbio-mage-utils-perl | 2 | {bio-dev} |
libmuscle | 2 | {bio-dev} |
- libpal-java | 2 | {bio-dev} |
mhap | 2 | {bio-ngs,bio} |
+ nifticlib | 2 | {imaging-dev} |
+ paraclu | 2 | {bio,cloud} |
pbdagcon | 2 | {bio} |
perm | 2 | {cloud,bio} |
- prottest | 2 | {bio,bio-phylogeny} |
- qcumber | 2 | {bio} |
+ piler | 2 | {bio} |
+ quorum | 2 | {bio} |
rtax | 2 | {cloud,bio} |
sga | 2 | {bio} |
sift | 2 | {bio} |
soapaligner | 2 | {bio} |
+ soapsnp | 2 | {bio} |
spaced | 2 | {bio} |
sprai | 2 | {bio} |
- stacks | 2 | {bio} |
brig | 1 | {bio} |
bustools | 1 | {bio,covid-19} |
cat-bat | 1 | {bio,covid-19} |
@@ -131,24 +128,24 @@ Last-Update: Sun, 10 Jan 2021 01:42:04 +0000
dextractor | 1 | {bio,covid-19} |
dindel | 1 | {bio} |
emmax | 1 | {bio} |
+ estscan | 1 | {bio} |
fsm-lite | 1 | {bio} |
gatb-core | 1 | {bio} |
hinge | 1 | {bio} |
libchado-perl | 1 | {bio-dev} |
libctapimkt | 1 | {practice} |
+ libpal-java | 1 | {bio-dev} |
logol | 1 | {bio} |
metaphlan2 | 1 | {bio} |
microbegps | 1 | {bio} |
nanosv | 1 | {covid-19,bio} |
- nifticlib | 1 | {imaging-dev} |
opencfu | 1 | {laboratory} |
openslide | 1 | {imaging-dev} |
opensurgsim | 1 | {imaging-dev} |
- pigx-rnaseq | 1 | {bio,covid-19} |
plasmidid | 1 | {covid-19,bio} |
- plasmidseeker | 1 | {bio} |
+ prottest | 1 | {bio,bio-phylogeny} |
+ qcumber | 1 | {bio} |
salmon | 1 | {covid-19,bio} |
- samtools-legacy | 1 | {bio-dev} |
segemehl | 1 | {bio} |
sight | 1 | {imaging} |
skesa | 1 | {bio} |
@@ -165,8 +162,8 @@ Last-Update: Sun, 10 Jan 2021 01:42:04 +0000
bambamc | 0 | {bio-dev} |
bbmap | 0 | {bio,covid-19} |
biojava4-live | 0 | {bio-dev} |
- biosig | 0 | {imaging-dev,physics} |
biosig | 0 | {physics} |
+ biosig | 0 | {imaging-dev,physics} |
biosyntax | 0 | {bio} |
bmtk | 0 | {psychology} |
camp | 0 | {imaging-dev} |
@@ -218,15 +215,18 @@ Last-Update: Sun, 10 Jan 2021 01:42:04 +0000
parallel-fastq-dump | 0 | {covid-19} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
+ pigx-rnaseq | 0 | {bio,covid-19} |
pilercr | 0 | {bio} |
pique | 0 | {bio} |
+ plasmidseeker | 0 | {bio} |
pplacer | 0 | {bio-phylogeny,bio,covid-19} |
python-bcbio-gff | 0 | {bio-dev} |
- python-seqcluster | 0 | {bio-dev,covid-19} |
python-seqcluster | 0 | {bio} |
+ python-seqcluster | 0 | {bio-dev,covid-19} |
q2-sample-classifier | 0 | {bio-dev,bio} |
resfinder-db | 0 | {bio} |
sambamba | 0 | {bio} |
+ samtools-legacy | 0 | {bio-dev} |
sbmltoolbox | 0 | {bio-dev} |
seqan | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/2c1ff87f75ad0eeb09922ee2295afc02ab38d414
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/2c1ff87f75ad0eeb09922ee2295afc02ab38d414
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