Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
8f84467f by Andreas Tille at 2021-01-12T13:45:38+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,146 +1,136 @@
-Last-Update: Tue, 12 Jan 2021 01:42:04 +0000
+Last-Update: Tue, 12 Jan 2021 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 186 | {imaging,covid-19} |
- orthanc | 102 | {covid-19,imaging,practice} |
+ dcmtk | 187 | {imaging,covid-19} |
+ orthanc | 101 | {covid-19,imaging,practice} |
orthanc-wsi | 54 | {imaging,his,laboratory,oncology,covid-19,practice} |
- gdcm | 37 | {imaging-dev} |
+ gdcm | 34 | {imaging-dev} |
amide | 30 | {imaging} |
+ dicom3tools | 30 | {imaging} |
dicomscope | 30 | {imaging} |
- dicom3tools | 29 | {imaging} |
- htsjdk | 24 | {bio-dev} |
+ htsjdk | 22 | {bio-dev} |
nifticlib | 19 | {imaging} |
dcm2niix | 18 | {imaging} |
- gnumed-server | 18 | {covid-19,practice} |
invesalius | 18 | {imaging} |
+ gdcm | 17 | {imaging-dev} |
+ gdcm | 17 | {covid-19,imaging} |
+ gnumed-server | 17 | {covid-19,practice} |
odin | 17 | {imaging,imaging-dev} |
dicomnifti | 15 | {imaging} |
- gdcm | 15 | {imaging-dev} |
- gdcm | 15 | {covid-19,imaging} |
- minc-tools | 14 | {imaging} |
- king | 13 | {imaging,typesetting} |
- pixelmed | 13 | {imaging} |
+ minc-tools | 15 | {imaging} |
+ pixelmed | 14 | {imaging} |
+ plastimatch | 13 | {imaging} |
+ king | 12 | {imaging,typesetting} |
openslide | 12 | {imaging} |
- plastimatch | 12 | {imaging} |
+ insighttoolkit4 | 11 | {imaging-dev} |
mia | 11 | {imaging} |
ngs-sdk | 11 | {bio-dev} |
- insighttoolkit4 | 10 | {imaging-dev} |
- ngs-sdk | 10 | {bio-dev} |
vtk-dicom | 10 | {imaging} |
biosig | 9 | {physics,imaging} |
orthanc-webviewer | 9 | {imaging} |
adun.app | 8 | {bio} |
+ nifti2dicom | 8 | {imaging} |
obitools | 8 | {bio} |
- bamkit | 7 | {covid-19,bio} |
fastlink | 7 | {cloud,bio} |
+ libminc | 7 | {imaging-dev} |
melting | 7 | {cloud,bio} |
- nifti2dicom | 7 | {imaging} |
+ bamkit | 6 | {covid-19,bio} |
biojava-live | 6 | {bio-dev} |
- bio-tradis | 6 | {bio-dev,bio} |
- busco | 6 | {bio,covid-19} |
- ea-utils | 6 | {bio} |
- libminc | 6 | {imaging-dev} |
+ nifti2dicom | 6 | {imaging} |
orthanc-dicomweb | 6 | {imaging,covid-19} |
orthanc-postgresql | 6 | {imaging} |
pymia | 6 | {imaging-dev} |
- treeview | 6 | {bio,bio-phylogeny} |
bart-view | 5 | {imaging} |
+ bio-tradis | 5 | {bio-dev,bio} |
+ busco | 5 | {bio,covid-19} |
dicompyler | 5 | {oncology} |
- embassy-domsearch | 5 | {cloud,bio} |
+ ea-utils | 5 | {bio} |
jebl2 | 5 | {bio-dev} |
- lagan | 5 | {bio} |
librg-utils-perl | 5 | {bio} |
- ngs-sdk | 5 | {bio-dev} |
- nifti2dicom | 5 | {imaging} |
orthanc-mysql | 5 | {imaging} |
- rambo-k | 5 | {bio} |
- beast-mcmc | 4 | {bio,bio-phylogeny} |
- biomaj3-cli | 4 | {cloud} |
- biomaj3-daemon | 4 | {bio} |
- canu | 4 | {bio} |
- embassy-domalign | 4 | {cloud,bio} |
+ prime-phylo | 5 | {bio,cloud} |
+ treeview | 5 | {bio,bio-phylogeny} |
+ embassy-domsearch | 4 | {cloud,bio} |
ipig | 4 | {bio} |
jellyfish1 | 4 | {bio} |
+ lagan | 4 | {bio} |
mipe | 4 | {cloud,bio} |
multiqc | 4 | {covid-19,bio} |
- prime-phylo | 4 | {bio,cloud} |
- proalign | 4 | {bio-phylogeny,bio} |
- pscan-chip | 4 | {bio} |
+ ngs-sdk | 4 | {bio-dev} |
+ rambo-k | 4 | {bio} |
rdp-alignment | 4 | {bio} |
- saint | 4 | {bio} |
seqsero | 4 | {bio} |
- sibsim4 | 4 | {bio,cloud} |
spread-phy | 4 | {bio-phylogeny,bio} |
anfo | 3 | {cloud,bio} |
arden | 3 | {cloud,bio} |
- assemblytics | 3 | {bio} |
- bitseq | 3 | {bio} |
- ecopcr | 3 | {bio} |
+ beast-mcmc | 3 | {bio,bio-phylogeny} |
+ biomaj3-daemon | 3 | {bio} |
+ canu | 3 | {bio} |
elastix | 3 | {imaging} |
+ embassy-domalign | 3 | {cloud,bio} |
getdata | 3 | {bio} |
- lamarc | 3 | {bio} |
- libdivsufsort | 3 | {bio-dev} |
- libncl | 3 | {bio} |
librdp-taxonomy-tree-java | 3 | {bio-dev} |
libsbml | 3 | {bio-dev} |
mauve-aligner | 3 | {bio} |
+ nifticlib | 3 | {imaging-dev} |
phast | 3 | {bio} |
- phybin | 3 | {bio} |
phyutility | 3 | {bio,cloud} |
- placnet | 3 | {bio} |
+ proalign | 3 | {bio-phylogeny,bio} |
+ pscan-chip | 3 | {bio} |
rdp-classifier | 3 | {bio} |
runcircos-gui | 3 | {bio} |
+ saint | 3 | {bio} |
salmid | 3 | {bio} |
- samblaster | 3 | {bio,covid-19} |
- staden | 3 | {bio} |
+ sibsim4 | 3 | {bio,cloud} |
zalign | 3 | {bio,cloud} |
+ assemblytics | 2 | {bio} |
+ biomaj3-cli | 2 | {cloud} |
+ bitseq | 2 | {bio} |
blasr | 2 | {bio-ngs,bio} |
blimps | 2 | {bio} |
- clonalframeml | 2 | {covid-19,bio} |
clonalorigin | 2 | {bio} |
delly | 2 | {covid-19,bio} |
+ ecopcr | 2 | {bio} |
embassy-domainatrix | 2 | {bio,cloud} |
- fastml | 2 | {bio} |
ghmm | 2 | {bio} |
- jmodeltest | 2 | {bio-phylogeny,bio} |
+ lamarc | 2 | {bio} |
libbio-mage-utils-perl | 2 | {bio-dev} |
+ libdivsufsort | 2 | {bio-dev} |
libmuscle | 2 | {bio-dev} |
+ libncl | 2 | {bio} |
mhap | 2 | {bio-ngs,bio} |
- nifticlib | 2 | {imaging-dev} |
paraclu | 2 | {bio,cloud} |
pbdagcon | 2 | {bio} |
perm | 2 | {cloud,bio} |
+ phybin | 2 | {bio} |
piler | 2 | {bio} |
+ placnet | 2 | {bio} |
quorum | 2 | {bio} |
- rtax | 2 | {cloud,bio} |
- sga | 2 | {bio} |
+ samblaster | 2 | {bio,covid-19} |
sift | 2 | {bio} |
- soapaligner | 2 | {bio} |
soapsnp | 2 | {bio} |
spaced | 2 | {bio} |
- sprai | 2 | {bio} |
stacks | 2 | {bio} |
+ staden | 2 | {bio} |
brig | 1 | {bio} |
- bustools | 1 | {bio,covid-19} |
cat-bat | 1 | {bio,covid-19} |
+ clonalframeml | 1 | {covid-19,bio} |
cufflinks | 1 | {cloud,bio} |
- dextractor | 1 | {bio,covid-19} |
dindel | 1 | {bio} |
- emmax | 1 | {bio} |
estscan | 1 | {bio} |
+ fastml | 1 | {bio} |
fsm-lite | 1 | {bio} |
gatb-core | 1 | {bio} |
gifticlib | 1 | {imaging-dev} |
hinge | 1 | {bio} |
- kmerresistance | 1 | {bio} |
+ jmodeltest | 1 | {bio-phylogeny,bio} |
libchado-perl | 1 | {bio-dev} |
libctapimkt | 1 | {practice} |
libpal-java | 1 | {bio-dev} |
logol | 1 | {bio} |
metaphlan2 | 1 | {bio} |
microbegps | 1 | {bio} |
- nanosv | 1 | {covid-19,bio} |
opencfu | 1 | {laboratory} |
openslide | 1 | {imaging-dev} |
opensurgsim | 1 | {imaging-dev} |
@@ -148,36 +138,39 @@ Last-Update: Tue, 12 Jan 2021 01:42:04 +0000
plasmidid | 1 | {covid-19,bio} |
prottest | 1 | {bio,bio-phylogeny} |
qcumber | 1 | {bio} |
+ rtax | 1 | {cloud,bio} |
salmon | 1 | {covid-19,bio} |
- segemehl | 1 | {bio} |
+ sga | 1 | {bio} |
sight | 1 | {imaging} |
- simpleitk | 1 | {imaging-dev} |
- skesa | 1 | {bio} |
- skewer | 1 | {bio} |
+ soapaligner | 1 | {bio} |
+ sprai | 1 | {bio} |
srf | 1 | {bio-dev} |
suitename | 1 | {bio} |
surankco | 1 | {bio} |
tracetuner | 1 | {bio} |
vienna-rna | 1 | {bio,covid-19} |
yaha | 1 | {bio} |
- yanagiba | 1 | {covid-19,bio} |
acedb | 0 | {bio,cloud} |
atropos | 0 | {bio} |
bambamc | 0 | {bio-dev} |
bbmap | 0 | {bio,covid-19} |
biojava4-live | 0 | {bio-dev} |
- biosig | 0 | {imaging-dev,physics} |
biosig | 0 | {physics} |
+ biosig | 0 | {imaging-dev,physics} |
biosyntax | 0 | {bio} |
bmtk | 0 | {psychology} |
+ bustools | 0 | {bio,covid-19} |
camp | 0 | {imaging-dev} |
ctn | 0 | {imaging-dev} |
+ dextractor | 0 | {bio,covid-19} |
eegdev | 0 | {imaging-dev} |
emboss-explorer | 0 | {bio} |
+ emmax | 0 | {bio} |
fis-gtm | 0 | {his} |
gatb-core | 0 | {bio-dev} |
htscodecs | 0 | {covid-19,bio-dev} |
intake | 0 | {bio,bio-dev} |
+ kmerresistance | 0 | {bio} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
libbioparser-dev | 0 | {bio-dev} |
@@ -209,6 +202,7 @@ Last-Update: Tue, 12 Jan 2021 01:42:04 +0000
mia | 0 | {imaging-dev} |
miaviewit | 0 | {imaging-dev} |
milib | 0 | {covid-19,bio-dev} |
+ nanosv | 0 | {covid-19,bio} |
ncbi-vdb | 0 | {bio-dev} |
nifticlib | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
@@ -229,11 +223,14 @@ Last-Update: Tue, 12 Jan 2021 01:42:04 +0000
sambamba | 0 | {bio} |
samtools-legacy | 0 | {bio-dev} |
sbmltoolbox | 0 | {bio-dev} |
+ segemehl | 0 | {bio} |
seqan | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
shovill | 0 | {bio,covid-19} |
simpleitk | 0 | {imaging-dev} |
simrisc | 0 | {oncology} |
+ skesa | 0 | {bio} |
+ skewer | 0 | {bio} |
smrtanalysis | 0 | {covid-19,bio} |
spaln | 0 | {bio,covid-19} |
svim | 0 | {bio} |
@@ -245,9 +242,10 @@ Last-Update: Tue, 12 Jan 2021 01:42:04 +0000
varscan | 0 | {bio,covid-19} |
vtk-dicom | 0 | {imaging-dev} |
xdffileio | 0 | {imaging-dev} |
+ yanagiba | 0 | {covid-19,bio} |
mssstest | -1 | {tools} |
orthanc-gdcm | -1 | {imaging} |
orthanc-python | -1 | {covid-19} |
sight | -1 | {imaging-dev} |
-(279 rows)
+(277 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/8f84467f80e808c109c67ba9145ab0022db57e04
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/8f84467f80e808c109c67ba9145ab0022db57e04
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