[med-svn] [Git][med-team/lumpy-sv][master] 3 commits: Fix configure patch according to a hint of Ken Yamaguchi

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / lumpy-sv


Commits:
fd4cb566 by Andreas Tille at 2021-01-13T10:34:09+01:00
Fix configure patch according to a hint of Ken Yamaguchi

- - - - -
280273f2 by Andreas Tille at 2021-01-13T10:34:23+01:00
routine-update: Standards-Version: 4.5.1

- - - - -
e25ffad9 by Andreas Tille at 2021-01-13T10:43:22+01:00
routine-update: Ready to upload to unstable

- - - - -


3 changed files:

- debian/changelog
- debian/control
- debian/patches/lumpyexpress.config.patch


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,11 @@
+lumpy-sv (0.3.1+dfsg-5) unstable; urgency=medium
+
+  * Fix configure patch according to a hint of Ken Yamaguchi
+    Closes: #980005
+  * Standards-Version: 4.5.1 (routine-update)
+
+ -- Andreas Tille <tille at debian.org>  Wed, 13 Jan 2021 10:34:36 +0100
+
 lumpy-sv (0.3.1+dfsg-4) unstable; urgency=medium
 
   * Link only in lumpy-sv binary (Closes: #973622)


=====================================
debian/control
=====================================
@@ -15,7 +15,7 @@ Build-Depends: debhelper-compat (= 13),
                libcurl4-gnutls-dev,
                samtools,
                python3-pysam
-Standards-Version: 4.5.0
+Standards-Version: 4.5.1
 Vcs-Browser: https://salsa.debian.org/med-team/lumpy-sv
 Vcs-Git: https://salsa.debian.org/med-team/lumpy-sv.git
 Homepage: https://github.com/arq5x/lumpy-sv


=====================================
debian/patches/lumpyexpress.config.patch
=====================================
@@ -27,8 +27,8 @@ Description: Adapt paths to Debian locations
  
 -    $PYTHON_TEST -c "import imp; imp.find_module('pysam')"
 -    $PYTHON_TEST -c "import imp; imp.find_module('numpy')"
-+    $PYTHON_TEST -c "import importlib; importlib.util.find_spec('pysam')"
-+    $PYTHON_TEST -c "import importlib; importlib.util.find_spec('numpy')"
++    $PYTHON_TEST -c "from importlib import util; print('pysam not found') if util.find_spec('pysam') is None else None"
++    $PYTHON_TEST -c "from importlib import util; print('numpy not found') if util.find_spec('numpy') is None else None"
  }
  
  ## usage



View it on GitLab: https://salsa.debian.org/med-team/lumpy-sv/-/compare/28c43251e003139c7eda70735389d40fcb594c91...e25ffad963d1fa7c29d7f01cb92dec3dcfac9562

-- 
View it on GitLab: https://salsa.debian.org/med-team/lumpy-sv/-/compare/28c43251e003139c7eda70735389d40fcb594c91...e25ffad963d1fa7c29d7f01cb92dec3dcfac9562
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