Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
d71f72b5 by Andreas Tille at 2021-01-13T13:45:40+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,101 +1,93 @@
-Last-Update: Wed, 13 Jan 2021 01:42:03 +0000
+Last-Update: Wed, 13 Jan 2021 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 187 | {imaging,covid-19} |
- orthanc | 101 | {covid-19,imaging,practice} |
- orthanc-wsi | 54 | {imaging,his,laboratory,oncology,covid-19,practice} |
+ dcmtk | 190 | {imaging,covid-19} |
+ orthanc | 102 | {covid-19,imaging,practice} |
+ orthanc-wsi | 55 | {imaging,his,laboratory,oncology,covid-19,practice} |
gdcm | 34 | {imaging-dev} |
amide | 30 | {imaging} |
- dicom3tools | 30 | {imaging} |
dicomscope | 30 | {imaging} |
- htsjdk | 22 | {bio-dev} |
- nifticlib | 19 | {imaging} |
+ dicom3tools | 29 | {imaging} |
+ htsjdk | 23 | {bio-dev} |
dcm2niix | 18 | {imaging} |
- invesalius | 18 | {imaging} |
+ gnumed-server | 18 | {covid-19,practice} |
+ nifticlib | 18 | {imaging} |
gdcm | 17 | {imaging-dev} |
- gdcm | 17 | {covid-19,imaging} |
- gnumed-server | 17 | {covid-19,practice} |
- odin | 17 | {imaging,imaging-dev} |
+ invesalius | 17 | {imaging} |
+ gdcm | 16 | {covid-19,imaging} |
+ odin | 16 | {imaging,imaging-dev} |
dicomnifti | 15 | {imaging} |
- minc-tools | 15 | {imaging} |
- pixelmed | 14 | {imaging} |
- plastimatch | 13 | {imaging} |
+ minc-tools | 13 | {imaging} |
king | 12 | {imaging,typesetting} |
- openslide | 12 | {imaging} |
+ pixelmed | 12 | {imaging} |
+ plastimatch | 12 | {imaging} |
insighttoolkit4 | 11 | {imaging-dev} |
- mia | 11 | {imaging} |
ngs-sdk | 11 | {bio-dev} |
+ ngs-sdk | 10 | {bio-dev} |
+ openslide | 10 | {imaging} |
vtk-dicom | 10 | {imaging} |
biosig | 9 | {physics,imaging} |
+ mia | 9 | {imaging} |
orthanc-webviewer | 9 | {imaging} |
- adun.app | 8 | {bio} |
nifti2dicom | 8 | {imaging} |
- obitools | 8 | {bio} |
- fastlink | 7 | {cloud,bio} |
+ adun.app | 7 | {bio} |
libminc | 7 | {imaging-dev} |
melting | 7 | {cloud,bio} |
- bamkit | 6 | {covid-19,bio} |
- biojava-live | 6 | {bio-dev} |
+ fastlink | 6 | {cloud,bio} |
nifti2dicom | 6 | {imaging} |
+ obitools | 6 | {bio} |
orthanc-dicomweb | 6 | {imaging,covid-19} |
orthanc-postgresql | 6 | {imaging} |
- pymia | 6 | {imaging-dev} |
+ bamkit | 5 | {covid-19,bio} |
bart-view | 5 | {imaging} |
- bio-tradis | 5 | {bio-dev,bio} |
- busco | 5 | {bio,covid-19} |
- dicompyler | 5 | {oncology} |
- ea-utils | 5 | {bio} |
- jebl2 | 5 | {bio-dev} |
- librg-utils-perl | 5 | {bio} |
+ ngs-sdk | 5 | {bio-dev} |
orthanc-mysql | 5 | {imaging} |
- prime-phylo | 5 | {bio,cloud} |
- treeview | 5 | {bio,bio-phylogeny} |
- embassy-domsearch | 4 | {cloud,bio} |
+ pymia | 5 | {imaging-dev} |
+ biojava-live | 4 | {bio-dev} |
+ dicompyler | 4 | {oncology} |
+ ea-utils | 4 | {bio} |
ipig | 4 | {bio} |
- jellyfish1 | 4 | {bio} |
- lagan | 4 | {bio} |
- mipe | 4 | {cloud,bio} |
+ jebl2 | 4 | {bio-dev} |
+ librg-utils-perl | 4 | {bio} |
multiqc | 4 | {covid-19,bio} |
- ngs-sdk | 4 | {bio-dev} |
- rambo-k | 4 | {bio} |
+ prime-phylo | 4 | {bio,cloud} |
rdp-alignment | 4 | {bio} |
- seqsero | 4 | {bio} |
spread-phy | 4 | {bio-phylogeny,bio} |
- anfo | 3 | {cloud,bio} |
- arden | 3 | {cloud,bio} |
- beast-mcmc | 3 | {bio,bio-phylogeny} |
- biomaj3-daemon | 3 | {bio} |
+ treeview | 4 | {bio,bio-phylogeny} |
+ bio-tradis | 3 | {bio-dev,bio} |
+ busco | 3 | {bio,covid-19} |
canu | 3 | {bio} |
elastix | 3 | {imaging} |
- embassy-domalign | 3 | {cloud,bio} |
+ embassy-domsearch | 3 | {cloud,bio} |
getdata | 3 | {bio} |
+ jellyfish1 | 3 | {bio} |
+ lagan | 3 | {bio} |
librdp-taxonomy-tree-java | 3 | {bio-dev} |
libsbml | 3 | {bio-dev} |
mauve-aligner | 3 | {bio} |
+ mipe | 3 | {cloud,bio} |
nifticlib | 3 | {imaging-dev} |
- phast | 3 | {bio} |
phyutility | 3 | {bio,cloud} |
proalign | 3 | {bio-phylogeny,bio} |
- pscan-chip | 3 | {bio} |
+ rambo-k | 3 | {bio} |
rdp-classifier | 3 | {bio} |
runcircos-gui | 3 | {bio} |
saint | 3 | {bio} |
salmid | 3 | {bio} |
+ seqsero | 3 | {bio} |
sibsim4 | 3 | {bio,cloud} |
- zalign | 3 | {bio,cloud} |
- assemblytics | 2 | {bio} |
+ anfo | 2 | {cloud,bio} |
+ arden | 2 | {cloud,bio} |
+ beast-mcmc | 2 | {bio,bio-phylogeny} |
biomaj3-cli | 2 | {cloud} |
- bitseq | 2 | {bio} |
- blasr | 2 | {bio-ngs,bio} |
+ biomaj3-daemon | 2 | {bio} |
blimps | 2 | {bio} |
- clonalorigin | 2 | {bio} |
- delly | 2 | {covid-19,bio} |
ecopcr | 2 | {bio} |
embassy-domainatrix | 2 | {bio,cloud} |
+ embassy-domalign | 2 | {cloud,bio} |
ghmm | 2 | {bio} |
lamarc | 2 | {bio} |
- libbio-mage-utils-perl | 2 | {bio-dev} |
libdivsufsort | 2 | {bio-dev} |
libmuscle | 2 | {bio-dev} |
libncl | 2 | {bio} |
@@ -103,9 +95,11 @@ Last-Update: Wed, 13 Jan 2021 01:42:03 +0000
paraclu | 2 | {bio,cloud} |
pbdagcon | 2 | {bio} |
perm | 2 | {cloud,bio} |
+ phast | 2 | {bio} |
phybin | 2 | {bio} |
piler | 2 | {bio} |
placnet | 2 | {bio} |
+ pscan-chip | 2 | {bio} |
quorum | 2 | {bio} |
samblaster | 2 | {bio,covid-19} |
sift | 2 | {bio} |
@@ -113,10 +107,16 @@ Last-Update: Wed, 13 Jan 2021 01:42:03 +0000
spaced | 2 | {bio} |
stacks | 2 | {bio} |
staden | 2 | {bio} |
+ zalign | 2 | {bio,cloud} |
+ assemblytics | 1 | {bio} |
+ bitseq | 1 | {bio} |
+ blasr | 1 | {bio-ngs,bio} |
brig | 1 | {bio} |
cat-bat | 1 | {bio,covid-19} |
clonalframeml | 1 | {covid-19,bio} |
+ clonalorigin | 1 | {bio} |
cufflinks | 1 | {cloud,bio} |
+ delly | 1 | {covid-19,bio} |
dindel | 1 | {bio} |
estscan | 1 | {bio} |
fastml | 1 | {bio} |
@@ -125,6 +125,7 @@ Last-Update: Wed, 13 Jan 2021 01:42:03 +0000
gifticlib | 1 | {imaging-dev} |
hinge | 1 | {bio} |
jmodeltest | 1 | {bio-phylogeny,bio} |
+ libbio-mage-utils-perl | 1 | {bio-dev} |
libchado-perl | 1 | {bio-dev} |
libctapimkt | 1 | {practice} |
libpal-java | 1 | {bio-dev} |
@@ -140,6 +141,7 @@ Last-Update: Wed, 13 Jan 2021 01:42:03 +0000
qcumber | 1 | {bio} |
rtax | 1 | {cloud,bio} |
salmon | 1 | {covid-19,bio} |
+ seqan | 1 | {bio-dev} |
sga | 1 | {bio} |
sight | 1 | {imaging} |
soapaligner | 1 | {bio} |
@@ -149,7 +151,6 @@ Last-Update: Wed, 13 Jan 2021 01:42:03 +0000
surankco | 1 | {bio} |
tracetuner | 1 | {bio} |
vienna-rna | 1 | {bio,covid-19} |
- yaha | 1 | {bio} |
acedb | 0 | {bio,cloud} |
atropos | 0 | {bio} |
bambamc | 0 | {bio-dev} |
@@ -216,15 +217,14 @@ Last-Update: Wed, 13 Jan 2021 01:42:03 +0000
plasmidseeker | 0 | {bio} |
pplacer | 0 | {bio-phylogeny,bio,covid-19} |
python-bcbio-gff | 0 | {bio-dev} |
- python-seqcluster | 0 | {bio} |
python-seqcluster | 0 | {bio-dev,covid-19} |
+ python-seqcluster | 0 | {bio} |
q2-sample-classifier | 0 | {bio-dev,bio} |
resfinder-db | 0 | {bio} |
sambamba | 0 | {bio} |
samtools-legacy | 0 | {bio-dev} |
sbmltoolbox | 0 | {bio-dev} |
segemehl | 0 | {bio} |
- seqan | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
shovill | 0 | {bio,covid-19} |
simpleitk | 0 | {imaging-dev} |
@@ -242,10 +242,11 @@ Last-Update: Wed, 13 Jan 2021 01:42:03 +0000
varscan | 0 | {bio,covid-19} |
vtk-dicom | 0 | {imaging-dev} |
xdffileio | 0 | {imaging-dev} |
+ yaha | 0 | {bio} |
yanagiba | 0 | {covid-19,bio} |
mssstest | -1 | {tools} |
orthanc-gdcm | -1 | {imaging} |
orthanc-python | -1 | {covid-19} |
sight | -1 | {imaging-dev} |
-(277 rows)
+(278 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/d71f72b5a14d24f210fd05fe163926c964ec38e8
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/d71f72b5a14d24f210fd05fe163926c964ec38e8
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