Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
3a5b438e by Andreas Tille at 2021-01-14T13:46:02+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,73 +1,81 @@
-Last-Update: Thu, 14 Jan 2021 01:42:04 +0000
+Last-Update: Thu, 14 Jan 2021 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 190 | {imaging,covid-19} |
- orthanc | 102 | {covid-19,imaging,practice} |
- orthanc-wsi | 55 | {imaging,his,laboratory,oncology,covid-19,practice} |
- gdcm | 34 | {imaging-dev} |
- amide | 30 | {imaging} |
+ dcmtk | 188 | {imaging,covid-19} |
+ orthanc | 101 | {covid-19,imaging,practice} |
+ orthanc-wsi | 54 | {imaging,his,laboratory,oncology,covid-19,practice} |
+ gdcm | 37 | {imaging-dev} |
+ amide | 32 | {imaging} |
+ dicom3tools | 31 | {imaging} |
dicomscope | 30 | {imaging} |
- dicom3tools | 29 | {imaging} |
htsjdk | 23 | {bio-dev} |
dcm2niix | 18 | {imaging} |
- gnumed-server | 18 | {covid-19,practice} |
nifticlib | 18 | {imaging} |
gdcm | 17 | {imaging-dev} |
+ gnumed-server | 17 | {covid-19,practice} |
invesalius | 17 | {imaging} |
gdcm | 16 | {covid-19,imaging} |
odin | 16 | {imaging,imaging-dev} |
dicomnifti | 15 | {imaging} |
- minc-tools | 13 | {imaging} |
+ minc-tools | 14 | {imaging} |
king | 12 | {imaging,typesetting} |
pixelmed | 12 | {imaging} |
plastimatch | 12 | {imaging} |
insighttoolkit4 | 11 | {imaging-dev} |
ngs-sdk | 11 | {bio-dev} |
- ngs-sdk | 10 | {bio-dev} |
+ biosig | 10 | {physics,imaging} |
+ mia | 10 | {imaging} |
openslide | 10 | {imaging} |
vtk-dicom | 10 | {imaging} |
- biosig | 9 | {physics,imaging} |
- mia | 9 | {imaging} |
- orthanc-webviewer | 9 | {imaging} |
+ ngs-sdk | 9 | {bio-dev} |
+ adun.app | 8 | {bio} |
nifti2dicom | 8 | {imaging} |
- adun.app | 7 | {bio} |
+ orthanc-webviewer | 8 | {imaging} |
libminc | 7 | {imaging-dev} |
melting | 7 | {cloud,bio} |
fastlink | 6 | {cloud,bio} |
nifti2dicom | 6 | {imaging} |
obitools | 6 | {bio} |
- orthanc-dicomweb | 6 | {imaging,covid-19} |
- orthanc-postgresql | 6 | {imaging} |
bamkit | 5 | {covid-19,bio} |
bart-view | 5 | {imaging} |
+ biojava-live | 5 | {bio-dev} |
+ ea-utils | 5 | {bio} |
ngs-sdk | 5 | {bio-dev} |
+ orthanc-dicomweb | 5 | {imaging,covid-19} |
orthanc-mysql | 5 | {imaging} |
- pymia | 5 | {imaging-dev} |
- biojava-live | 4 | {bio-dev} |
+ orthanc-postgresql | 5 | {imaging} |
+ bio-tradis | 4 | {bio-dev,bio} |
dicompyler | 4 | {oncology} |
- ea-utils | 4 | {bio} |
ipig | 4 | {bio} |
jebl2 | 4 | {bio-dev} |
+ lagan | 4 | {bio} |
librg-utils-perl | 4 | {bio} |
multiqc | 4 | {covid-19,bio} |
prime-phylo | 4 | {bio,cloud} |
+ pymia | 4 | {imaging-dev} |
rdp-alignment | 4 | {bio} |
spread-phy | 4 | {bio-phylogeny,bio} |
treeview | 4 | {bio,bio-phylogeny} |
- bio-tradis | 3 | {bio-dev,bio} |
+ anfo | 3 | {cloud,bio} |
+ arden | 3 | {cloud,bio} |
+ biomaj3-cli | 3 | {cloud} |
busco | 3 | {bio,covid-19} |
canu | 3 | {bio} |
elastix | 3 | {imaging} |
+ embassy-domainatrix | 3 | {bio,cloud} |
+ embassy-domalign | 3 | {cloud,bio} |
embassy-domsearch | 3 | {cloud,bio} |
getdata | 3 | {bio} |
jellyfish1 | 3 | {bio} |
- lagan | 3 | {bio} |
+ libncl | 3 | {bio} |
librdp-taxonomy-tree-java | 3 | {bio-dev} |
libsbml | 3 | {bio-dev} |
mauve-aligner | 3 | {bio} |
mipe | 3 | {cloud,bio} |
nifticlib | 3 | {imaging-dev} |
+ pbdagcon | 3 | {bio} |
+ phast | 3 | {bio} |
phyutility | 3 | {bio,cloud} |
proalign | 3 | {bio-phylogeny,bio} |
rambo-k | 3 | {bio} |
@@ -77,25 +85,22 @@ Last-Update: Thu, 14 Jan 2021 01:42:04 +0000
salmid | 3 | {bio} |
seqsero | 3 | {bio} |
sibsim4 | 3 | {bio,cloud} |
- anfo | 2 | {cloud,bio} |
- arden | 2 | {cloud,bio} |
+ zalign | 3 | {bio,cloud} |
+ assemblytics | 2 | {bio} |
beast-mcmc | 2 | {bio,bio-phylogeny} |
- biomaj3-cli | 2 | {cloud} |
biomaj3-daemon | 2 | {bio} |
+ bitseq | 2 | {bio} |
blimps | 2 | {bio} |
+ clonalorigin | 2 | {bio} |
+ cufflinks | 2 | {cloud,bio} |
ecopcr | 2 | {bio} |
- embassy-domainatrix | 2 | {bio,cloud} |
- embassy-domalign | 2 | {cloud,bio} |
ghmm | 2 | {bio} |
lamarc | 2 | {bio} |
libdivsufsort | 2 | {bio-dev} |
libmuscle | 2 | {bio-dev} |
- libncl | 2 | {bio} |
mhap | 2 | {bio-ngs,bio} |
paraclu | 2 | {bio,cloud} |
- pbdagcon | 2 | {bio} |
perm | 2 | {cloud,bio} |
- phast | 2 | {bio} |
phybin | 2 | {bio} |
piler | 2 | {bio} |
placnet | 2 | {bio} |
@@ -107,15 +112,11 @@ Last-Update: Thu, 14 Jan 2021 01:42:04 +0000
spaced | 2 | {bio} |
stacks | 2 | {bio} |
staden | 2 | {bio} |
- zalign | 2 | {bio,cloud} |
- assemblytics | 1 | {bio} |
- bitseq | 1 | {bio} |
+ tracetuner | 2 | {bio} |
blasr | 1 | {bio-ngs,bio} |
brig | 1 | {bio} |
cat-bat | 1 | {bio,covid-19} |
clonalframeml | 1 | {covid-19,bio} |
- clonalorigin | 1 | {bio} |
- cufflinks | 1 | {cloud,bio} |
delly | 1 | {covid-19,bio} |
dindel | 1 | {bio} |
estscan | 1 | {bio} |
@@ -149,15 +150,15 @@ Last-Update: Thu, 14 Jan 2021 01:42:04 +0000
srf | 1 | {bio-dev} |
suitename | 1 | {bio} |
surankco | 1 | {bio} |
- tracetuner | 1 | {bio} |
vienna-rna | 1 | {bio,covid-19} |
+ yaha | 1 | {bio} |
acedb | 0 | {bio,cloud} |
atropos | 0 | {bio} |
bambamc | 0 | {bio-dev} |
bbmap | 0 | {bio,covid-19} |
biojava4-live | 0 | {bio-dev} |
- biosig | 0 | {physics} |
biosig | 0 | {imaging-dev,physics} |
+ biosig | 0 | {physics} |
biosyntax | 0 | {bio} |
bmtk | 0 | {psychology} |
bustools | 0 | {bio,covid-19} |
@@ -217,8 +218,8 @@ Last-Update: Thu, 14 Jan 2021 01:42:04 +0000
plasmidseeker | 0 | {bio} |
pplacer | 0 | {bio-phylogeny,bio,covid-19} |
python-bcbio-gff | 0 | {bio-dev} |
- python-seqcluster | 0 | {bio-dev,covid-19} |
python-seqcluster | 0 | {bio} |
+ python-seqcluster | 0 | {bio-dev,covid-19} |
q2-sample-classifier | 0 | {bio-dev,bio} |
resfinder-db | 0 | {bio} |
sambamba | 0 | {bio} |
@@ -242,7 +243,6 @@ Last-Update: Thu, 14 Jan 2021 01:42:04 +0000
varscan | 0 | {bio,covid-19} |
vtk-dicom | 0 | {imaging-dev} |
xdffileio | 0 | {imaging-dev} |
- yaha | 0 | {bio} |
yanagiba | 0 | {covid-19,bio} |
mssstest | -1 | {tools} |
orthanc-gdcm | -1 | {imaging} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/3a5b438e00723da9a0ad75db8b953c09f5685b01
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/3a5b438e00723da9a0ad75db8b953c09f5685b01
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