[med-svn] [Git][med-team/cyvcf2][master] 4 commits: routine-update: New upstream version

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / cyvcf2


Commits:
f032d1c8 by Andreas Tille at 2021-01-17T09:49:11+01:00
routine-update: New upstream version

- - - - -
48be2431 by Andreas Tille at 2021-01-17T09:49:12+01:00
New upstream version 0.30.4
- - - - -
3f98c459 by Andreas Tille at 2021-01-17T09:49:14+01:00
Update upstream source from tag 'upstream/0.30.4'

Update to upstream version '0.30.4'
with Debian dir cb6c7a575abc7148f6925a6a2765d5c7573f10f2
- - - - -
2dc9352a by Andreas Tille at 2021-01-17T09:51:08+01:00
routine-update: Ready to upload to unstable

- - - - -


4 changed files:

- .github/workflows/wheels.yml
- README.md
- cyvcf2/__init__.py
- debian/changelog


Changes:

=====================================
.github/workflows/wheels.yml
=====================================
@@ -54,3 +54,37 @@ jobs:
     - uses: actions/upload-artifact at v2
       with:
         path: ./wheelhouse/*.whl
+
+  build_sdist:
+    name: Build source distribution
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout at v2
+
+      - uses: actions/setup-python at v2
+        name: Install Python
+        with:
+          python-version: "3.7"
+
+      - name: Build sdist
+        run: python setup.py sdist
+
+      - uses: actions/upload-artifact at v2
+        with:
+          path: dist/*.tar.gz
+
+  upload_pypi:
+    needs: [build_wheels, build_sdist]
+    runs-on: ubuntu-latest
+    # upload to PyPI on every tag starting with 'v'
+    if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags/v')
+    steps:
+      - uses: actions/download-artifact at v2
+        with:
+          name: artifact
+          path: dist
+
+      - uses: pypa/gh-action-pypi-publish at master
+        with:
+          user: __token__
+          password: ${{ secrets.PYPI_API_TOKEN }}


=====================================
README.md
=====================================
@@ -13,7 +13,8 @@ If you use cyvcf2, please cite the [paper](https://academic.oup.com/bioinformati
 
 Fast python **(2 and 3)** parsing of VCF and BCF including region-queries.
 
-[![Build Status](https://travis-ci.com/brentp/cyvcf2.svg?branch=master)](https://travis-ci.com/brentp/cyvcf2)
+
+[![Build Status](https://github.com/brentp/cyvcf2/workflows/Build/badge.svg)](https://github.com/brentp/cyvcf2/actions?query=workflow%3ABuild)
 
 cyvcf2 is a cython wrapper around [htslib](https://github.com/samtools/htslib) built for fast parsing of [Variant Call Format](https://en.m.wikipedia.org/wiki/Variant_Call_Format) (VCF) files.
 


=====================================
cyvcf2/__init__.py
=====================================
@@ -2,4 +2,4 @@ from .cyvcf2 import (VCF, Variant, Writer, r_ as r_unphased, par_relatedness,
                      par_het)
 Reader = VCFReader = VCF
 
-__version__ = "0.30.2"
+__version__ = "0.30.4"


=====================================
debian/changelog
=====================================
@@ -1,3 +1,10 @@
+cyvcf2 (0.30.4-1) unstable; urgency=medium
+
+  * Team upload.
+  * New upstream version
+
+ -- Andreas Tille <tille at debian.org>  Sun, 17 Jan 2021 09:49:20 +0100
+
 cyvcf2 (0.30.2-1) unstable; urgency=medium
 
   * New upstream version



View it on GitLab: https://salsa.debian.org/med-team/cyvcf2/-/compare/7f6b2fae618fba5e9a9844076d2c338c6c9dc2db...2dc9352a689ffcca8d46d989ed072b117cea266b

-- 
View it on GitLab: https://salsa.debian.org/med-team/cyvcf2/-/compare/7f6b2fae618fba5e9a9844076d2c338c6c9dc2db...2dc9352a689ffcca8d46d989ed072b117cea266b
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