Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
8bb36ed6 by Andreas Tille at 2021-01-18T13:51:42+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,159 +1,183 @@
-Last-Update: Mon, 18 Jan 2021 01:42:03 +0000
+Last-Update: Mon, 18 Jan 2021 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 187 | {imaging,covid-19} |
+ dcmtk | 186 | {imaging,covid-19} |
orthanc | 101 | {covid-19,imaging,practice} |
orthanc-wsi | 54 | {imaging,his,laboratory,oncology,covid-19,practice} |
- gdcm | 36 | {imaging-dev} |
+ gdcm | 37 | {imaging-dev} |
amide | 31 | {imaging} |
dicomscope | 30 | {imaging} |
- dicom3tools | 28 | {imaging} |
- htsjdk | 23 | {bio-dev} |
+ dicom3tools | 27 | {imaging} |
+ htsjdk | 25 | {bio-dev} |
dcm2niix | 20 | {imaging} |
- nifticlib | 20 | {imaging} |
- invesalius | 17 | {imaging} |
- gdcm | 16 | {covid-19,imaging} |
+ nifticlib | 19 | {imaging} |
gdcm | 16 | {imaging-dev} |
+ gdcm | 16 | {covid-19,imaging} |
gnumed-server | 16 | {covid-19,practice} |
- odin | 16 | {imaging,imaging-dev} |
- dicomnifti | 15 | {imaging} |
- minc-tools | 14 | {imaging} |
- king | 13 | {imaging,typesetting} |
- plastimatch | 13 | {imaging} |
- ngs-sdk | 12 | {bio-dev} |
- pixelmed | 12 | {imaging} |
- insighttoolkit4 | 11 | {imaging-dev} |
- mia | 10 | {imaging} |
- openslide | 10 | {imaging} |
- vtk-dicom | 10 | {imaging} |
- ngs-sdk | 9 | {bio-dev} |
- adun.app | 8 | {bio} |
+ invesalius | 15 | {imaging} |
+ odin | 15 | {imaging,imaging-dev} |
+ dicomnifti | 14 | {imaging} |
+ ngs-sdk | 14 | {bio-dev} |
+ minc-tools | 13 | {imaging} |
+ plastimatch | 12 | {imaging} |
+ king | 11 | {imaging,typesetting} |
+ pixelmed | 11 | {imaging} |
+ insighttoolkit4 | 10 | {imaging-dev} |
+ adun.app | 9 | {bio} |
+ mia | 9 | {imaging} |
+ openslide | 9 | {imaging} |
+ vtk-dicom | 9 | {imaging} |
+ melting | 8 | {cloud,bio} |
+ ngs-sdk | 8 | {bio-dev} |
orthanc-webviewer | 8 | {imaging} |
+ fastlink | 7 | {cloud,bio} |
libminc | 7 | {imaging-dev} |
- melting | 7 | {cloud,bio} |
nifti2dicom | 7 | {imaging} |
- fastlink | 6 | {cloud,bio} |
+ biojava-live | 6 | {bio-dev} |
ngs-sdk | 6 | {bio-dev} |
bamkit | 5 | {covid-19,bio} |
bart-view | 5 | {imaging} |
- biojava-live | 5 | {bio-dev} |
+ bio-tradis | 5 | {bio-dev,bio} |
+ jebl2 | 5 | {bio-dev} |
+ librg-utils-perl | 5 | {bio} |
+ libsbml | 5 | {bio-dev} |
nifti2dicom | 5 | {imaging} |
obitools | 5 | {bio} |
orthanc-dicomweb | 5 | {imaging,covid-19} |
orthanc-mysql | 5 | {imaging} |
orthanc-postgresql | 5 | {imaging} |
- bio-tradis | 4 | {bio-dev,bio} |
+ prime-phylo | 5 | {bio,cloud} |
+ rdp-alignment | 5 | {bio} |
+ spread-phy | 5 | {bio-phylogeny,bio} |
+ treeview | 5 | {bio,bio-phylogeny} |
+ anfo | 4 | {cloud,bio} |
+ arden | 4 | {cloud,bio} |
+ biomaj3-cli | 4 | {cloud} |
dicompyler | 4 | {oncology} |
ea-utils | 4 | {bio} |
+ embassy-domainatrix | 4 | {bio,cloud} |
+ embassy-domalign | 4 | {cloud,bio} |
+ embassy-domsearch | 4 | {cloud,bio} |
ipig | 4 | {bio} |
- jebl2 | 4 | {bio-dev} |
- librg-utils-perl | 4 | {bio} |
- libsbml | 4 | {bio-dev} |
+ libncl | 4 | {bio} |
+ librdp-taxonomy-tree-java | 4 | {bio-dev} |
+ mauve-aligner | 4 | {bio} |
+ mipe | 4 | {cloud,bio} |
multiqc | 4 | {covid-19,bio} |
- prime-phylo | 4 | {bio,cloud} |
- pymia | 4 | {imaging-dev} |
- rdp-alignment | 4 | {bio} |
- spread-phy | 4 | {bio-phylogeny,bio} |
- treeview | 4 | {bio,bio-phylogeny} |
- anfo | 3 | {cloud,bio} |
- arden | 3 | {cloud,bio} |
- biomaj3-cli | 3 | {cloud} |
- busco | 3 | {bio,covid-19} |
+ pbdagcon | 4 | {bio} |
+ phast | 4 | {bio} |
+ phyutility | 4 | {bio,cloud} |
+ proalign | 4 | {bio-phylogeny,bio} |
+ rambo-k | 4 | {bio} |
+ rdp-classifier | 4 | {bio} |
+ runcircos-gui | 4 | {bio} |
+ saint | 4 | {bio} |
+ seqsero | 4 | {bio} |
+ sibsim4 | 4 | {bio,cloud} |
+ zalign | 4 | {bio,cloud} |
+ assemblytics | 3 | {bio} |
+ beast-mcmc | 3 | {bio,bio-phylogeny} |
+ bitseq | 3 | {bio} |
+ blimps | 3 | {bio} |
canu | 3 | {bio} |
+ clonalorigin | 3 | {bio} |
+ cufflinks | 3 | {cloud,bio} |
+ ecopcr | 3 | {bio} |
elastix | 3 | {imaging} |
- embassy-domainatrix | 3 | {bio,cloud} |
- embassy-domalign | 3 | {cloud,bio} |
- embassy-domsearch | 3 | {cloud,bio} |
getdata | 3 | {bio} |
jellyfish1 | 3 | {bio} |
lagan | 3 | {bio} |
- libncl | 3 | {bio} |
- librdp-taxonomy-tree-java | 3 | {bio-dev} |
- mauve-aligner | 3 | {bio} |
- mipe | 3 | {cloud,bio} |
- pbdagcon | 3 | {bio} |
- phast | 3 | {bio} |
- phyutility | 3 | {bio,cloud} |
- proalign | 3 | {bio-phylogeny,bio} |
- rambo-k | 3 | {bio} |
- rdp-classifier | 3 | {bio} |
- runcircos-gui | 3 | {bio} |
- saint | 3 | {bio} |
+ lamarc | 3 | {bio} |
+ libdivsufsort | 3 | {bio-dev} |
+ nifticlib | 3 | {imaging-dev} |
+ paraclu | 3 | {bio,cloud} |
+ perm | 3 | {cloud,bio} |
+ phybin | 3 | {bio} |
+ piler | 3 | {bio} |
+ pscan-chip | 3 | {bio} |
+ pymia | 3 | {imaging-dev} |
+ quorum | 3 | {bio} |
salmid | 3 | {bio} |
- seqsero | 3 | {bio} |
- sibsim4 | 3 | {bio,cloud} |
- zalign | 3 | {bio,cloud} |
- assemblytics | 2 | {bio} |
- beast-mcmc | 2 | {bio,bio-phylogeny} |
- biomaj3-daemon | 2 | {bio} |
- bitseq | 2 | {bio} |
- blimps | 2 | {bio} |
- clonalorigin | 2 | {bio} |
- cufflinks | 2 | {cloud,bio} |
- ecopcr | 2 | {bio} |
- lamarc | 2 | {bio} |
- libdivsufsort | 2 | {bio-dev} |
+ salmon | 3 | {covid-19,bio} |
+ samblaster | 3 | {bio,covid-19} |
+ sift | 3 | {bio} |
+ soapsnp | 3 | {bio} |
+ srf | 3 | {bio-dev} |
+ staden | 3 | {bio} |
+ tracetuner | 3 | {bio} |
+ brig | 2 | {bio} |
+ busco | 2 | {bio,covid-19} |
+ clonalframeml | 2 | {covid-19,bio} |
+ delly | 2 | {covid-19,bio} |
+ dindel | 2 | {bio} |
+ estscan | 2 | {bio} |
+ fastml | 2 | {bio} |
+ fsm-lite | 2 | {bio} |
+ gatb-core | 2 | {bio} |
+ ghmm | 2 | {bio} |
+ hinge | 2 | {bio} |
+ jmodeltest | 2 | {bio-phylogeny,bio} |
+ libbio-mage-utils-perl | 2 | {bio-dev} |
+ libchado-perl | 2 | {bio-dev} |
+ libmuscle | 2 | {bio-dev} |
+ libpal-java | 2 | {bio-dev} |
+ logol | 2 | {bio} |
+ metaphlan2 | 2 | {bio} |
mhap | 2 | {bio-ngs,bio} |
- nifticlib | 2 | {imaging-dev} |
- paraclu | 2 | {bio,cloud} |
- perm | 2 | {cloud,bio} |
- phybin | 2 | {bio} |
- piler | 2 | {bio} |
- pscan-chip | 2 | {bio} |
- quorum | 2 | {bio} |
- samblaster | 2 | {bio,covid-19} |
- sift | 2 | {bio} |
- soapsnp | 2 | {bio} |
+ microbegps | 2 | {bio} |
+ placnet | 2 | {bio} |
+ prottest | 2 | {bio,bio-phylogeny} |
+ qcumber | 2 | {bio} |
+ rtax | 2 | {cloud,bio} |
+ seqan | 2 | {bio-dev} |
+ sga | 2 | {bio} |
+ soapaligner | 2 | {bio} |
spaced | 2 | {bio} |
- srf | 2 | {bio-dev} |
+ sprai | 2 | {bio} |
stacks | 2 | {bio} |
- staden | 2 | {bio} |
- tracetuner | 2 | {bio} |
+ suitename | 2 | {bio} |
+ surankco | 2 | {bio} |
+ yaha | 2 | {bio} |
+ bambamc | 1 | {bio-dev} |
blasr | 1 | {bio-ngs,bio} |
- brig | 1 | {bio} |
cat-bat | 1 | {bio,covid-19} |
- clonalframeml | 1 | {covid-19,bio} |
- delly | 1 | {covid-19,bio} |
- dindel | 1 | {bio} |
- estscan | 1 | {bio} |
- fastml | 1 | {bio} |
- fsm-lite | 1 | {bio} |
- gatb-core | 1 | {bio} |
- ghmm | 1 | {bio} |
+ gatb-core | 1 | {bio-dev} |
gifticlib | 1 | {imaging-dev} |
- hinge | 1 | {bio} |
- jmodeltest | 1 | {bio-phylogeny,bio} |
- libbio-mage-utils-perl | 1 | {bio-dev} |
- libchado-perl | 1 | {bio-dev} |
+ libbpp-core | 1 | {bio-dev} |
+ libbpp-phyl | 1 | {bio-dev} |
+ libbpp-phyl-omics | 1 | {bio-dev} |
+ libbpp-popgen | 1 | {bio-dev} |
+ libbpp-raa | 1 | {bio-dev} |
+ libbpp-seq | 1 | {bio-dev} |
+ libbpp-seq-omics | 1 | {bio-dev} |
libctapimkt | 1 | {practice} |
- libmuscle | 1 | {bio-dev} |
- libpal-java | 1 | {bio-dev} |
- logol | 1 | {bio} |
- metaphlan2 | 1 | {bio} |
- microbegps | 1 | {bio} |
+ libdisorder | 1 | {bio-dev} |
+ libgenome | 1 | {bio-dev} |
+ libgkarrays | 1 | {bio-dev} |
+ libhmsbeagle | 1 | {bio-dev} |
+ libmems | 1 | {bio-dev} |
+ libncl | 1 | {bio-dev} |
+ libqes | 1 | {bio-dev} |
+ libseqlib | 1 | {bio-dev} |
+ libstatgen | 1 | {bio-dev} |
+ ncbi-vdb | 1 | {bio-dev} |
opencfu | 1 | {laboratory} |
opensurgsim | 1 | {imaging-dev} |
oscar | 1 | {tools,practice,data} |
papyrus | 1 | {imaging-dev} |
- placnet | 1 | {bio} |
+ pbseqlib | 1 | {bio-dev} |
plasmidid | 1 | {covid-19,bio} |
- prottest | 1 | {bio,bio-phylogeny} |
- qcumber | 1 | {bio} |
- rtax | 1 | {cloud,bio} |
- salmon | 1 | {covid-19,bio} |
- seqan | 1 | {bio-dev} |
- sga | 1 | {bio} |
+ plasmidseeker | 1 | {bio} |
+ segemehl | 1 | {bio} |
+ seq-gen | 1 | {bio} |
sight | 1 | {imaging} |
- soapaligner | 1 | {bio} |
- sprai | 1 | {bio} |
- suitename | 1 | {bio} |
- surankco | 1 | {bio} |
+ trace2dbest | 1 | {bio} |
+ tvc | 1 | {bio} |
+ varscan | 1 | {bio,covid-19} |
vienna-rna | 1 | {bio,covid-19} |
- yaha | 1 | {bio} |
acedb | 0 | {bio,cloud} |
atropos | 0 | {bio} |
- bambamc | 0 | {bio-dev} |
bbmap | 0 | {bio,covid-19} |
biojava4-live | 0 | {bio-dev} |
biosyntax | 0 | {bio} |
@@ -166,34 +190,17 @@ Last-Update: Mon, 18 Jan 2021 01:42:03 +0000
emboss-explorer | 0 | {bio} |
emmax | 0 | {bio} |
fis-gtm | 0 | {his} |
- gatb-core | 0 | {bio-dev} |
htscodecs | 0 | {covid-19,bio-dev} |
intake | 0 | {bio,bio-dev} |
kmerresistance | 0 | {bio} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
libbioparser-dev | 0 | {bio-dev} |
- libbpp-core | 0 | {bio-dev} |
- libbpp-phyl | 0 | {bio-dev} |
- libbpp-phyl-omics | 0 | {bio-dev} |
- libbpp-popgen | 0 | {bio-dev} |
- libbpp-raa | 0 | {bio-dev} |
- libbpp-seq | 0 | {bio-dev} |
- libbpp-seq-omics | 0 | {bio-dev} |
- libdisorder | 0 | {bio-dev} |
- libgenome | 0 | {bio-dev} |
- libgkarrays | 0 | {bio-dev} |
- libhmsbeagle | 0 | {bio-dev} |
libics | 0 | {covid-19,imaging-dev} |
libjloda-java | 0 | {bio-dev} |
libmaus2 | 0 | {covid-19,bio-dev} |
- libmems | 0 | {bio-dev} |
libmialm | 0 | {imaging-dev} |
- libncl | 0 | {bio-dev} |
libpsortb | 0 | {bio-dev} |
- libqes | 0 | {bio-dev} |
- libseqlib | 0 | {bio-dev} |
- libstatgen | 0 | {bio-dev} |
libvistaio | 0 | {imaging-dev} |
libxdf | 0 | {imaging-dev} |
metastudent-data | 0 | {bio} |
@@ -202,7 +209,6 @@ Last-Update: Mon, 18 Jan 2021 01:42:03 +0000
miaviewit | 0 | {imaging-dev} |
milib | 0 | {covid-19,bio-dev} |
nanosv | 0 | {covid-19,bio} |
- ncbi-vdb | 0 | {bio-dev} |
nifticlib | 0 | {imaging-dev} |
openslide | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
@@ -212,18 +218,15 @@ Last-Update: Mon, 18 Jan 2021 01:42:03 +0000
pigx-rnaseq | 0 | {bio,covid-19} |
pilercr | 0 | {bio} |
pique | 0 | {bio} |
- plasmidseeker | 0 | {bio} |
pplacer | 0 | {bio-phylogeny,bio,covid-19} |
python-bcbio-gff | 0 | {bio-dev} |
- python-seqcluster | 0 | {bio-dev,covid-19} |
python-seqcluster | 0 | {bio} |
+ python-seqcluster | 0 | {bio-dev,covid-19} |
q2-sample-classifier | 0 | {bio-dev,bio} |
resfinder-db | 0 | {bio} |
sambamba | 0 | {bio} |
samtools-legacy | 0 | {bio-dev} |
sbmltoolbox | 0 | {bio-dev} |
- segemehl | 0 | {bio} |
- seq-gen | 0 | {bio} |
shovill | 0 | {bio,covid-19} |
simpleitk | 0 | {imaging-dev} |
simrisc | 0 | {oncology} |
@@ -234,10 +237,7 @@ Last-Update: Mon, 18 Jan 2021 01:42:03 +0000
svim | 0 | {bio} |
thesias | 0 | {covid-19,bio} |
tophat-recondition | 0 | {bio,covid-19} |
- trace2dbest | 0 | {bio} |
- tvc | 0 | {bio} |
varna | 0 | {bio} |
- varscan | 0 | {bio,covid-19} |
vtk-dicom | 0 | {imaging-dev} |
xdffileio | 0 | {imaging-dev} |
yanagiba | 0 | {covid-19,bio} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/8bb36ed6088b59e54ecc922a2cb8b1f6348973e4
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/8bb36ed6088b59e54ecc922a2cb8b1f6348973e4
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