[med-svn] [Git][med-team/trinityrnaseq][master] Add patch to remove m64 flag. Hopefully helps arm64 to compile.

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch master at Debian Med / trinityrnaseq


Commits:
f1fe3840 by Michael R. Crusoe at 2021-01-19T07:34:05+01:00
Add patch to remove m64 flag. Hopefully helps arm64 to compile.

- - - - -


3 changed files:

- debian/changelog
- debian/patches/series
- + debian/patches/strip_m64


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,9 @@
+trinityrnaseq (2.11.0+dfsg-4) unstable; urgency=medium
+
+  * Add patch to remove m64 flag. Hopefully helps arm64 to compile.
+
+ -- Michael R. Crusoe <crusoe at debian.org>  Tue, 19 Jan 2021 07:33:58 +0100
+
 trinityrnaseq (2.11.0+dfsg-3) unstable; urgency=medium
 
   * debian/tests/control: adjust so that the tests don't have to pass on archs


=====================================
debian/patches/series
=====================================
@@ -20,3 +20,4 @@ skip_blat
 fix-gcc-10.patch
 bamsifter_build
 skip_DTU_STAR_test
+strip_m64


=====================================
debian/patches/strip_m64
=====================================
@@ -0,0 +1,24 @@
+From: Michael R. Crusoe <crusoe at debian.org>
+Subject: remove -m64 flag, hopefully helps arm64 compile
+--- trinityrnaseq.orig/Chrysalis/CMakeLists.txt
++++ trinityrnaseq/Chrysalis/CMakeLists.txt
+@@ -13,7 +13,7 @@
+     set(CMAKE_BUILD_TYPE "${default_build_type}")
+ endif()
+ 
+-set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -pipe -W -Wall -Wpedantic -fopenmp -pthread -m64")
++set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -pipe -W -Wall -Wpedantic -fopenmp -pthread")
+ 
+ set(CMAKE_CXX_FLAGS_RELEASE "${CMAKE_CXX_FLAGS_RELEASE} -O2  -DNDEBUG ")
+ set(CMAKE_CXX_FLAGS_DEBUG "${CMAKE_CXX_FLAGS_DEBUG} -g -O0")
+--- trinityrnaseq.orig/Inchworm/CMakeLists.txt
++++ trinityrnaseq/Inchworm/CMakeLists.txt
+@@ -13,7 +13,7 @@
+     set(CMAKE_BUILD_TYPE "${default_build_type}")
+ endif()
+ 
+-set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -pipe -W -Wall -Wpedantic -fopenmp -m64")
++set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -pipe -W -Wall -Wpedantic -fopenmp")
+ 
+ set(CMAKE_CXX_FLAGS_RELEASE "${CMAKE_CXX_FLAGS_RELEASE} -O2 -DNDEBUG ")
+ set(CMAKE_CXX_FLAGS_DEBUG "${CMAKE_CXX_FLAGS_DEBUG} -g -O0")



View it on GitLab: https://salsa.debian.org/med-team/trinityrnaseq/-/commit/f1fe384018753aa43e02f91a259303ea4e994f4e

-- 
View it on GitLab: https://salsa.debian.org/med-team/trinityrnaseq/-/commit/f1fe384018753aa43e02f91a259303ea4e994f4e
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20210119/4dff1d64/attachment-0001.html>