[med-svn] [Git][med-team/pufferfish][master] 16 commits: routine-update: New upstream version

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch master at Debian Med / pufferfish


Commits:
a765ae2c by Michael R. Crusoe at 2020-07-08T17:44:41+02:00
routine-update: New upstream version

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18d91ee0 by Michael R. Crusoe at 2020-07-08T17:44:44+02:00
New upstream version 1.3.0
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0ea2d163 by Michael R. Crusoe at 2020-07-08T17:44:53+02:00
Update upstream source from tag 'upstream/1.3.0'

Update to upstream version '1.3.0'
with Debian dir df71c7791f5aec2246102681f919c610f9b7e39b
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dd27b36f by Michael R. Crusoe at 2020-07-08T17:44:54+02:00
routine-update: debhelper-compat 13

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a694b56f by Michael R. Crusoe at 2020-07-08T17:51:45+02:00
refresh patch

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146e660b by Michael R. Crusoe at 2020-07-08T17:52:13+02:00
routine-update: Remove trailing whitespace in debian/copyright

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ffdcb756 by Michael R. Crusoe at 2020-07-08T17:52:15+02:00
routine-update: Add salsa-ci file

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c4027f5f by Michael R. Crusoe at 2020-07-08T17:52:18+02:00
routine-update: Rules-Requires-Root: no

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9c37c867 by Michael R. Crusoe at 2020-07-08T18:10:07+02:00
cleanup changelog

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753ce11c by Michael R. Crusoe at 2021-01-19T08:03:12+01:00
routine-update: New upstream version

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574e179d by Michael R. Crusoe at 2021-01-19T08:03:16+01:00
New upstream version 1.4.0
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e86892b8 by Michael R. Crusoe at 2021-01-19T08:03:29+01:00
Update upstream source from tag 'upstream/1.4.0'

Update to upstream version '1.4.0'
with Debian dir da654e1aba2daf1eaa93e658b2fd904a25379388
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6bb5fbe6 by Michael R. Crusoe at 2021-01-19T08:03:30+01:00
routine-update: Standards-Version: 4.5.1

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1d810646 by Michael R. Crusoe at 2021-01-19T08:07:45+01:00
set package name in autopkgtest script

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a9d2d3ff by Michael R. Crusoe at 2021-01-19T08:14:45+01:00
refresh patches

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dd7b8d21 by Michael R. Crusoe at 2021-01-19T08:23:16+01:00
clean up changelog

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30 changed files:

- CMakeLists.txt
- cmake/Modules/FindJemalloc.cmake
- debian/changelog
- debian/control
- debian/copyright
- debian/patches/use-debian-libs
- + debian/salsa-ci.yml
- debian/tests/run-unit-test
- external/twopaco/graphdump/compact_vector/compact_vector.hpp
- external/twopaco/graphdump/graphdumpBinaryWriter.hpp
- include/BooPHF.hpp
- + include/BulkChunk.hpp
- include/CanonicalKmer.hpp
- include/CanonicalKmerIterator.hpp
- include/FastxParserThreadUtils.hpp
- include/Kmer.hpp
- include/MemChainer.hpp
- include/MemCollector.hpp
- include/ProgOpts.hpp
- include/PuffAligner.hpp
- include/PufferfishBaseIndex.hpp
- include/PufferfishIndex.hpp
- include/PufferfishLossyIndex.hpp
- include/PufferfishSparseIndex.hpp
- include/SAMWriter.hpp
- include/Util.hpp
- include/chobo/memory_view.hpp
- include/chobo/static_vector.hpp
- include/clipp.h
- include/compact_vector/compact_vector.hpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/pufferfish/-/compare/0f15a119bde0832a443d3bef83505b50f80a99b2...dd7b8d211152f06dc87002f9b61517e89b9bd683

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View it on GitLab: https://salsa.debian.org/med-team/pufferfish/-/compare/0f15a119bde0832a443d3bef83505b50f80a99b2...dd7b8d211152f06dc87002f9b61517e89b9bd683
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