Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
60d731ab by Andreas Tille at 2021-01-20T13:46:22+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,102 +1,106 @@
-Last-Update: Wed, 20 Jan 2021 01:42:04 +0000
+Last-Update: Wed, 20 Jan 2021 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 184 | {imaging,covid-19} |
+ dcmtk | 187 | {imaging,covid-19} |
orthanc | 100 | {covid-19,imaging,practice} |
orthanc-wsi | 53 | {imaging,his,laboratory,oncology,covid-19,practice} |
- gdcm | 39 | {imaging-dev} |
- amide | 29 | {imaging} |
- dicomscope | 29 | {imaging} |
+ gdcm | 38 | {imaging-dev} |
+ amide | 30 | {imaging} |
dicom3tools | 27 | {imaging} |
- htsjdk | 25 | {bio-dev} |
+ dicomscope | 26 | {imaging} |
+ htsjdk | 26 | {bio-dev} |
dcm2niix | 19 | {imaging} |
- nifticlib | 18 | {imaging} |
- gdcm | 16 | {covid-19,imaging} |
+ nifticlib | 19 | {imaging} |
+ gdcm | 17 | {covid-19,imaging} |
gnumed-server | 16 | {covid-19,practice} |
gdcm | 15 | {imaging-dev} |
odin | 15 | {imaging,imaging-dev} |
invesalius | 14 | {imaging} |
- ngs-sdk | 14 | {bio-dev} |
dicomnifti | 13 | {imaging} |
- minc-tools | 12 | {imaging} |
- plastimatch | 12 | {imaging} |
- king | 11 | {imaging,typesetting} |
+ minc-tools | 13 | {imaging} |
+ ngs-sdk | 13 | {bio-dev} |
+ plastimatch | 13 | {imaging} |
pixelmed | 11 | {imaging} |
insighttoolkit4 | 10 | {imaging-dev} |
+ king | 10 | {imaging,typesetting} |
+ mia | 10 | {imaging} |
+ vtk-dicom | 10 | {imaging} |
adun.app | 9 | {bio} |
- mia | 9 | {imaging} |
+ ngs-sdk | 9 | {bio-dev} |
openslide | 9 | {imaging} |
- vtk-dicom | 9 | {imaging} |
+ biojava-live | 8 | {bio-dev} |
melting | 8 | {cloud,bio} |
- ngs-sdk | 8 | {bio-dev} |
+ nifti2dicom | 8 | {imaging} |
orthanc-webviewer | 8 | {imaging} |
+ bio-tradis | 7 | {bio-dev,bio} |
fastlink | 7 | {cloud,bio} |
- libminc | 7 | {imaging-dev} |
- nifti2dicom | 7 | {imaging} |
- biojava-live | 6 | {bio-dev} |
+ bamkit | 6 | {covid-19,bio} |
+ jebl2 | 6 | {bio-dev} |
+ libminc | 6 | {imaging-dev} |
librg-utils-perl | 6 | {bio} |
- ngs-sdk | 6 | {bio-dev} |
- bamkit | 5 | {covid-19,bio} |
+ nifti2dicom | 6 | {imaging} |
+ obitools | 6 | {bio} |
+ rdp-alignment | 6 | {bio} |
bart-view | 5 | {imaging} |
- bio-tradis | 5 | {bio-dev,bio} |
- jebl2 | 5 | {bio-dev} |
+ ea-utils | 5 | {bio} |
+ embassy-domainatrix | 5 | {bio,cloud} |
+ libncl | 5 | {bio} |
libsbml | 5 | {bio-dev} |
- nifti2dicom | 5 | {imaging} |
- obitools | 5 | {bio} |
+ mauve-aligner | 5 | {bio} |
+ mipe | 5 | {cloud,bio} |
+ ngs-sdk | 5 | {bio-dev} |
orthanc-dicomweb | 5 | {imaging,covid-19} |
orthanc-mysql | 5 | {imaging} |
orthanc-postgresql | 5 | {imaging} |
+ phast | 5 | {bio} |
prime-phylo | 5 | {bio,cloud} |
- rdp-alignment | 5 | {bio} |
+ pymia | 5 | {imaging-dev} |
spread-phy | 5 | {bio-phylogeny,bio} |
treeview | 5 | {bio,bio-phylogeny} |
anfo | 4 | {cloud,bio} |
arden | 4 | {cloud,bio} |
biomaj3-cli | 4 | {cloud} |
- dicompyler | 4 | {oncology} |
- ea-utils | 4 | {bio} |
- embassy-domainatrix | 4 | {bio,cloud} |
+ bitseq | 4 | {bio} |
+ clonalorigin | 4 | {bio} |
+ ecopcr | 4 | {bio} |
embassy-domalign | 4 | {cloud,bio} |
embassy-domsearch | 4 | {cloud,bio} |
+ ghmm | 4 | {bio} |
ipig | 4 | {bio} |
- libncl | 4 | {bio} |
+ jellyfish1 | 4 | {bio} |
+ lagan | 4 | {bio} |
+ libdivsufsort | 4 | {bio-dev} |
librdp-taxonomy-tree-java | 4 | {bio-dev} |
- mauve-aligner | 4 | {bio} |
- mipe | 4 | {cloud,bio} |
pbdagcon | 4 | {bio} |
- phast | 4 | {bio} |
+ perm | 4 | {cloud,bio} |
phyutility | 4 | {bio,cloud} |
- proalign | 4 | {bio-phylogeny,bio} |
rambo-k | 4 | {bio} |
rdp-classifier | 4 | {bio} |
runcircos-gui | 4 | {bio} |
saint | 4 | {bio} |
seqsero | 4 | {bio} |
sibsim4 | 4 | {bio,cloud} |
+ tracetuner | 4 | {bio} |
zalign | 4 | {bio,cloud} |
assemblytics | 3 | {bio} |
beast-mcmc | 3 | {bio,bio-phylogeny} |
- bitseq | 3 | {bio} |
blimps | 3 | {bio} |
+ busco | 3 | {bio,covid-19} |
canu | 3 | {bio} |
- clonalorigin | 3 | {bio} |
cufflinks | 3 | {cloud,bio} |
- ecopcr | 3 | {bio} |
+ dicompyler | 3 | {oncology} |
elastix | 3 | {imaging} |
getdata | 3 | {bio} |
- jellyfish1 | 3 | {bio} |
- lagan | 3 | {bio} |
lamarc | 3 | {bio} |
- libdivsufsort | 3 | {bio-dev} |
multiqc | 3 | {covid-19,bio} |
nifticlib | 3 | {imaging-dev} |
paraclu | 3 | {bio,cloud} |
- perm | 3 | {cloud,bio} |
phybin | 3 | {bio} |
piler | 3 | {bio} |
+ proalign | 3 | {bio-phylogeny,bio} |
pscan-chip | 3 | {bio} |
- pymia | 3 | {imaging-dev} |
+ qcumber | 3 | {bio} |
quorum | 3 | {bio} |
salmid | 3 | {bio} |
salmon | 3 | {covid-19,bio} |
@@ -104,10 +108,10 @@ Last-Update: Wed, 20 Jan 2021 01:42:04 +0000
sift | 3 | {bio} |
soapsnp | 3 | {bio} |
srf | 3 | {bio-dev} |
+ stacks | 3 | {bio} |
staden | 3 | {bio} |
- tracetuner | 3 | {bio} |
+ surankco | 3 | {bio} |
brig | 2 | {bio} |
- busco | 2 | {bio,covid-19} |
clonalframeml | 2 | {covid-19,bio} |
delly | 2 | {covid-19,bio} |
dindel | 2 | {bio} |
@@ -115,11 +119,9 @@ Last-Update: Wed, 20 Jan 2021 01:42:04 +0000
fastml | 2 | {bio} |
fsm-lite | 2 | {bio} |
gatb-core | 2 | {bio} |
- ghmm | 2 | {bio} |
hinge | 2 | {bio} |
jmodeltest | 2 | {bio-phylogeny,bio} |
libbio-mage-utils-perl | 2 | {bio-dev} |
- libchado-perl | 2 | {bio-dev} |
libmuscle | 2 | {bio-dev} |
libpal-java | 2 | {bio-dev} |
logol | 2 | {bio} |
@@ -128,16 +130,14 @@ Last-Update: Wed, 20 Jan 2021 01:42:04 +0000
microbegps | 2 | {bio} |
placnet | 2 | {bio} |
prottest | 2 | {bio,bio-phylogeny} |
- qcumber | 2 | {bio} |
rtax | 2 | {cloud,bio} |
seqan | 2 | {bio-dev} |
sga | 2 | {bio} |
soapaligner | 2 | {bio} |
spaced | 2 | {bio} |
sprai | 2 | {bio} |
- stacks | 2 | {bio} |
suitename | 2 | {bio} |
- surankco | 2 | {bio} |
+ tvc | 2 | {bio} |
yaha | 2 | {bio} |
bambamc | 1 | {bio-dev} |
blasr | 1 | {bio-ngs,bio} |
@@ -151,6 +151,7 @@ Last-Update: Wed, 20 Jan 2021 01:42:04 +0000
libbpp-raa | 1 | {bio-dev} |
libbpp-seq | 1 | {bio-dev} |
libbpp-seq-omics | 1 | {bio-dev} |
+ libchado-perl | 1 | {bio-dev} |
libctapimkt | 1 | {practice} |
libdisorder | 1 | {bio-dev} |
libgenome | 1 | {bio-dev} |
@@ -173,7 +174,6 @@ Last-Update: Wed, 20 Jan 2021 01:42:04 +0000
seq-gen | 1 | {bio} |
sight | 1 | {imaging} |
trace2dbest | 1 | {bio} |
- tvc | 1 | {bio} |
varscan | 1 | {bio,covid-19} |
acedb | 0 | {bio,cloud} |
atropos | 0 | {bio} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/60d731abe152957cf62374d29c6e07b4e87bd818
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/60d731abe152957cf62374d29c6e07b4e87bd818
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