[med-svn] [Git][med-team/pbcopper][upstream] New upstream version 1.9.0+dfsg

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch upstream at Debian Med / pbcopper


Commits:
3f036d0c by Michael R. Crusoe at 2020-12-23T18:17:58+01:00
New upstream version 1.9.0+dfsg
- - - - -


30 changed files:

- CHANGELOG.md
- include/meson.build
- include/pbcopper/PbcopperConfig.h
- + include/pbcopper/align/EdlibAlign.h
- include/pbcopper/data/Cigar.h
- include/pbcopper/data/FrameEncoders.h
- + include/pbcopper/data/IntervalTree.h
- include/pbcopper/data/Strand.h
- + include/pbcopper/parallel/ThreadCount.h
- include/pbcopper/pbmer/KFGraph.h
- + include/pbcopper/poa/PoaConsensus.h
- + include/pbcopper/poa/PoaGraph.h
- + include/pbcopper/poa/RangeFinder.h
- + include/pbcopper/poa/SparsePoa.h
- + include/pbcopper/third-party/ksw2/LICENSE.txt
- + include/pbcopper/third-party/ksw2/kalloc.h
- + include/pbcopper/third-party/ksw2/ksw2.h
- include/pbcopper/utility/Alarm.h
- include/pbcopper/utility/SequenceUtils.h
- − include/pbcopper/utility/StringView.h
- meson.build
- + src/align/EdlibAlign.cpp
- src/align/cssw/ssw.c
- src/align/cssw/ssw.h
- src/cli2/CLI.cpp
- src/cli2/Results.cpp
- src/dagcon/AlignmentGraph.cpp
- src/data/Cigar.cpp
- src/data/FrameEncoders.cpp
- + src/data/IntervalTree.cpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/pbcopper/-/commit/3f036d0c82c1a8c418b8b7725630eccf6cad5865

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