Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
23635426 by Andreas Tille at 2021-01-21T13:45:53+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,12 +1,12 @@
-Last-Update: Thu, 21 Jan 2021 01:42:04 +0000
+Last-Update: Thu, 21 Jan 2021 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
dcmtk | 187 | {imaging,covid-19} |
- orthanc | 100 | {covid-19,imaging,practice} |
- orthanc-wsi | 53 | {imaging,his,laboratory,oncology,covid-19,practice} |
- gdcm | 38 | {imaging-dev} |
- amide | 30 | {imaging} |
+ orthanc | 101 | {covid-19,imaging,practice} |
+ orthanc-wsi | 54 | {imaging,his,laboratory,oncology,covid-19,practice} |
+ gdcm | 35 | {imaging-dev} |
+ amide | 31 | {imaging} |
dicom3tools | 27 | {imaging} |
dicomscope | 26 | {imaging} |
htsjdk | 26 | {bio-dev} |
@@ -14,8 +14,8 @@ Last-Update: Thu, 21 Jan 2021 01:42:04 +0000
nifticlib | 19 | {imaging} |
gdcm | 17 | {covid-19,imaging} |
gnumed-server | 16 | {covid-19,practice} |
- gdcm | 15 | {imaging-dev} |
- odin | 15 | {imaging,imaging-dev} |
+ odin | 16 | {imaging,imaging-dev} |
+ gdcm | 14 | {imaging-dev} |
invesalius | 14 | {imaging} |
dicomnifti | 13 | {imaging} |
minc-tools | 13 | {imaging} |
@@ -26,121 +26,122 @@ Last-Update: Thu, 21 Jan 2021 01:42:04 +0000
king | 10 | {imaging,typesetting} |
mia | 10 | {imaging} |
vtk-dicom | 10 | {imaging} |
- adun.app | 9 | {bio} |
ngs-sdk | 9 | {bio-dev} |
openslide | 9 | {imaging} |
+ adun.app | 8 | {bio} |
biojava-live | 8 | {bio-dev} |
- melting | 8 | {cloud,bio} |
nifti2dicom | 8 | {imaging} |
orthanc-webviewer | 8 | {imaging} |
bio-tradis | 7 | {bio-dev,bio} |
fastlink | 7 | {cloud,bio} |
+ jebl2 | 7 | {bio-dev} |
+ librg-utils-perl | 7 | {bio} |
+ melting | 7 | {cloud,bio} |
+ rdp-alignment | 7 | {bio} |
bamkit | 6 | {covid-19,bio} |
- jebl2 | 6 | {bio-dev} |
libminc | 6 | {imaging-dev} |
- librg-utils-perl | 6 | {bio} |
+ mauve-aligner | 6 | {bio} |
+ mipe | 6 | {cloud,bio} |
nifti2dicom | 6 | {imaging} |
obitools | 6 | {bio} |
- rdp-alignment | 6 | {bio} |
- bart-view | 5 | {imaging} |
+ prime-phylo | 6 | {bio,cloud} |
ea-utils | 5 | {bio} |
embassy-domainatrix | 5 | {bio,cloud} |
+ embassy-domsearch | 5 | {cloud,bio} |
+ ghmm | 5 | {bio} |
libncl | 5 | {bio} |
libsbml | 5 | {bio-dev} |
- mauve-aligner | 5 | {bio} |
- mipe | 5 | {cloud,bio} |
ngs-sdk | 5 | {bio-dev} |
orthanc-dicomweb | 5 | {imaging,covid-19} |
orthanc-mysql | 5 | {imaging} |
orthanc-postgresql | 5 | {imaging} |
+ perm | 5 | {cloud,bio} |
phast | 5 | {bio} |
- prime-phylo | 5 | {bio,cloud} |
pymia | 5 | {imaging-dev} |
+ rambo-k | 5 | {bio} |
+ runcircos-gui | 5 | {bio} |
+ saint | 5 | {bio} |
+ seqsero | 5 | {bio} |
spread-phy | 5 | {bio-phylogeny,bio} |
treeview | 5 | {bio,bio-phylogeny} |
anfo | 4 | {cloud,bio} |
- arden | 4 | {cloud,bio} |
+ bart-view | 4 | {imaging} |
+ beast-mcmc | 4 | {bio,bio-phylogeny} |
biomaj3-cli | 4 | {cloud} |
bitseq | 4 | {bio} |
clonalorigin | 4 | {bio} |
ecopcr | 4 | {bio} |
embassy-domalign | 4 | {cloud,bio} |
- embassy-domsearch | 4 | {cloud,bio} |
- ghmm | 4 | {bio} |
- ipig | 4 | {bio} |
jellyfish1 | 4 | {bio} |
lagan | 4 | {bio} |
+ lamarc | 4 | {bio} |
libdivsufsort | 4 | {bio-dev} |
librdp-taxonomy-tree-java | 4 | {bio-dev} |
+ paraclu | 4 | {bio,cloud} |
pbdagcon | 4 | {bio} |
- perm | 4 | {cloud,bio} |
phyutility | 4 | {bio,cloud} |
- rambo-k | 4 | {bio} |
+ piler | 4 | {bio} |
+ proalign | 4 | {bio-phylogeny,bio} |
+ pscan-chip | 4 | {bio} |
+ qcumber | 4 | {bio} |
+ quorum | 4 | {bio} |
rdp-classifier | 4 | {bio} |
- runcircos-gui | 4 | {bio} |
- saint | 4 | {bio} |
- seqsero | 4 | {bio} |
+ samblaster | 4 | {bio,covid-19} |
sibsim4 | 4 | {bio,cloud} |
+ staden | 4 | {bio} |
tracetuner | 4 | {bio} |
- zalign | 4 | {bio,cloud} |
+ arden | 3 | {cloud,bio} |
assemblytics | 3 | {bio} |
- beast-mcmc | 3 | {bio,bio-phylogeny} |
blimps | 3 | {bio} |
+ brig | 3 | {bio} |
busco | 3 | {bio,covid-19} |
canu | 3 | {bio} |
cufflinks | 3 | {cloud,bio} |
dicompyler | 3 | {oncology} |
elastix | 3 | {imaging} |
+ estscan | 3 | {bio} |
getdata | 3 | {bio} |
- lamarc | 3 | {bio} |
- multiqc | 3 | {covid-19,bio} |
+ ipig | 3 | {bio} |
+ jmodeltest | 3 | {bio-phylogeny,bio} |
+ libpal-java | 3 | {bio-dev} |
+ microbegps | 3 | {bio} |
nifticlib | 3 | {imaging-dev} |
- paraclu | 3 | {bio,cloud} |
phybin | 3 | {bio} |
- piler | 3 | {bio} |
- proalign | 3 | {bio-phylogeny,bio} |
- pscan-chip | 3 | {bio} |
- qcumber | 3 | {bio} |
- quorum | 3 | {bio} |
+ prottest | 3 | {bio,bio-phylogeny} |
+ rtax | 3 | {cloud,bio} |
salmid | 3 | {bio} |
salmon | 3 | {covid-19,bio} |
- samblaster | 3 | {bio,covid-19} |
sift | 3 | {bio} |
soapsnp | 3 | {bio} |
srf | 3 | {bio-dev} |
stacks | 3 | {bio} |
- staden | 3 | {bio} |
surankco | 3 | {bio} |
- brig | 2 | {bio} |
+ tvc | 3 | {bio} |
+ zalign | 3 | {bio,cloud} |
+ blasr | 2 | {bio-ngs,bio} |
clonalframeml | 2 | {covid-19,bio} |
delly | 2 | {covid-19,bio} |
dindel | 2 | {bio} |
- estscan | 2 | {bio} |
fastml | 2 | {bio} |
fsm-lite | 2 | {bio} |
gatb-core | 2 | {bio} |
hinge | 2 | {bio} |
- jmodeltest | 2 | {bio-phylogeny,bio} |
libbio-mage-utils-perl | 2 | {bio-dev} |
libmuscle | 2 | {bio-dev} |
- libpal-java | 2 | {bio-dev} |
logol | 2 | {bio} |
metaphlan2 | 2 | {bio} |
mhap | 2 | {bio-ngs,bio} |
- microbegps | 2 | {bio} |
+ multiqc | 2 | {covid-19,bio} |
placnet | 2 | {bio} |
- prottest | 2 | {bio,bio-phylogeny} |
- rtax | 2 | {cloud,bio} |
+ plasmidseeker | 2 | {bio} |
seqan | 2 | {bio-dev} |
sga | 2 | {bio} |
soapaligner | 2 | {bio} |
spaced | 2 | {bio} |
sprai | 2 | {bio} |
suitename | 2 | {bio} |
- tvc | 2 | {bio} |
yaha | 2 | {bio} |
bambamc | 1 | {bio-dev} |
- blasr | 1 | {bio-ngs,bio} |
cat-bat | 1 | {bio,covid-19} |
gatb-core | 1 | {bio-dev} |
gifticlib | 1 | {imaging-dev} |
@@ -169,7 +170,6 @@ Last-Update: Thu, 21 Jan 2021 01:42:04 +0000
papyrus | 1 | {imaging-dev} |
pbseqlib | 1 | {bio-dev} |
plasmidid | 1 | {covid-19,bio} |
- plasmidseeker | 1 | {bio} |
segemehl | 1 | {bio} |
seq-gen | 1 | {bio} |
sight | 1 | {imaging} |
@@ -219,8 +219,8 @@ Last-Update: Thu, 21 Jan 2021 01:42:04 +0000
pique | 0 | {bio} |
pplacer | 0 | {bio-phylogeny,bio,covid-19} |
python-bcbio-gff | 0 | {bio-dev} |
- python-seqcluster | 0 | {bio-dev,covid-19} |
python-seqcluster | 0 | {bio} |
+ python-seqcluster | 0 | {bio-dev,covid-19} |
q2-sample-classifier | 0 | {bio-dev,bio} |
resfinder-db | 0 | {bio} |
sambamba | 0 | {bio} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/23635426a1b7174bc182e3c82917b789c5a7c790
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/23635426a1b7174bc182e3c82917b789c5a7c790
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