Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
703fb344 by Andreas Tille at 2021-01-24T13:45:31+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,140 +1,139 @@
-Last-Update: Sun, 24 Jan 2021 01:42:04 +0000
+Last-Update: Sun, 24 Jan 2021 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 184 | {imaging,covid-19} |
- orthanc | 98 | {covid-19,imaging,practice} |
- orthanc-wsi | 53 | {imaging,his,laboratory,oncology,covid-19,practice} |
+ dcmtk | 184 | {covid-19,imaging} |
+ orthanc | 97 | {practice,covid-19,imaging} |
+ orthanc-wsi | 53 | {laboratory,imaging,his,covid-19,practice,oncology} |
gdcm | 35 | {imaging-dev} |
+ dicom3tools | 29 | {imaging} |
amide | 28 | {imaging} |
- dicom3tools | 28 | {imaging} |
- htsjdk | 25 | {bio-dev} |
- dicomscope | 23 | {imaging} |
- dcm2niix | 20 | {imaging} |
- nifticlib | 18 | {imaging} |
- gdcm | 17 | {covid-19,imaging} |
- odin | 16 | {imaging,imaging-dev} |
+ htsjdk | 26 | {bio-dev} |
+ dicomscope | 25 | {imaging} |
+ dcm2niix | 21 | {imaging} |
+ gdcm | 19 | {imaging,covid-19} |
+ nifticlib | 19 | {imaging} |
+ odin | 17 | {imaging,imaging-dev} |
+ ngs-sdk | 15 | {bio-dev} |
+ plastimatch | 15 | {imaging} |
+ dicomnifti | 14 | {imaging} |
gdcm | 14 | {imaging-dev} |
- gnumed-server | 14 | {covid-19,practice} |
- invesalius | 14 | {imaging} |
- ngs-sdk | 14 | {bio-dev} |
- plastimatch | 14 | {imaging} |
- dicomnifti | 13 | {imaging} |
+ gnumed-server | 14 | {practice,covid-19} |
+ invesalius | 13 | {imaging} |
minc-tools | 13 | {imaging} |
- insighttoolkit4 | 11 | {imaging-dev} |
- king | 11 | {imaging,typesetting} |
- pixelmed | 11 | {imaging} |
+ insighttoolkit4 | 12 | {imaging-dev} |
+ pixelmed | 12 | {imaging} |
+ king | 11 | {typesetting,imaging} |
mia | 10 | {imaging} |
+ openslide | 10 | {imaging} |
vtk-dicom | 10 | {imaging} |
- openslide | 9 | {imaging} |
+ nifti2dicom | 9 | {imaging} |
adun.app | 8 | {bio} |
- ngs-sdk | 8 | {bio-dev} |
- nifti2dicom | 8 | {imaging} |
+ biojava-live | 8 | {bio-dev} |
orthanc-webviewer | 8 | {imaging} |
- biojava-live | 7 | {bio-dev} |
jebl2 | 7 | {bio-dev} |
- melting | 7 | {cloud,bio} |
- rdp-alignment | 7 | {bio} |
- bamkit | 6 | {covid-19,bio} |
- bio-tradis | 6 | {bio-dev,bio} |
+ mauve-aligner | 7 | {bio} |
+ melting | 7 | {bio,cloud} |
+ ngs-sdk | 7 | {bio-dev} |
+ nifti2dicom | 7 | {imaging} |
+ bamkit | 6 | {bio,covid-19} |
+ bio-tradis | 6 | {bio,bio-dev} |
fastlink | 6 | {cloud,bio} |
libminc | 6 | {imaging-dev} |
libncl | 6 | {bio} |
librg-utils-perl | 6 | {bio} |
- mauve-aligner | 6 | {bio} |
- mipe | 6 | {cloud,bio} |
- nifti2dicom | 6 | {imaging} |
+ mipe | 6 | {bio,cloud} |
+ ngs-sdk | 6 | {bio-dev} |
obitools | 6 | {bio} |
perm | 6 | {cloud,bio} |
- prime-phylo | 6 | {bio,cloud} |
+ prime-phylo | 6 | {cloud,bio} |
+ rdp-alignment | 6 | {bio} |
runcircos-gui | 6 | {bio} |
saint | 6 | {bio} |
- biomaj3-cli | 5 | {cloud} |
ea-utils | 5 | {bio} |
ecopcr | 5 | {bio} |
embassy-domainatrix | 5 | {bio,cloud} |
- embassy-domsearch | 5 | {cloud,bio} |
+ embassy-domsearch | 5 | {bio,cloud} |
ghmm | 5 | {bio} |
jellyfish1 | 5 | {bio} |
lagan | 5 | {bio} |
lamarc | 5 | {bio} |
librdp-taxonomy-tree-java | 5 | {bio-dev} |
- ngs-sdk | 5 | {bio-dev} |
- orthanc-dicomweb | 5 | {imaging,covid-19} |
- orthanc-mysql | 5 | {imaging} |
- orthanc-postgresql | 5 | {imaging} |
+ multiqc | 5 | {covid-19,bio} |
+ orthanc-dicomweb | 5 | {covid-19,imaging} |
phast | 5 | {bio} |
- pymia | 5 | {imaging-dev} |
rambo-k | 5 | {bio} |
rdp-classifier | 5 | {bio} |
seqsero | 5 | {bio} |
spread-phy | 5 | {bio-phylogeny,bio} |
staden | 5 | {bio} |
tracetuner | 5 | {bio} |
- treeview | 5 | {bio,bio-phylogeny} |
+ treeview | 5 | {bio-phylogeny,bio} |
anfo | 4 | {cloud,bio} |
bart-view | 4 | {imaging} |
- beast-mcmc | 4 | {bio,bio-phylogeny} |
+ beast-mcmc | 4 | {bio-phylogeny,bio} |
+ biomaj3-cli | 4 | {cloud} |
bitseq | 4 | {bio} |
brig | 4 | {bio} |
clonalorigin | 4 | {bio} |
+ cufflinks | 4 | {bio,cloud} |
embassy-domalign | 4 | {cloud,bio} |
libdivsufsort | 4 | {bio-dev} |
libpal-java | 4 | {bio-dev} |
libsbml | 4 | {bio-dev} |
- multiqc | 4 | {covid-19,bio} |
- paraclu | 4 | {bio,cloud} |
+ nifticlib | 4 | {imaging-dev} |
+ orthanc-mysql | 4 | {imaging} |
+ orthanc-postgresql | 4 | {imaging} |
+ paraclu | 4 | {cloud,bio} |
pbdagcon | 4 | {bio} |
- phyutility | 4 | {bio,cloud} |
+ phyutility | 4 | {cloud,bio} |
piler | 4 | {bio} |
- proalign | 4 | {bio-phylogeny,bio} |
- prottest | 4 | {bio,bio-phylogeny} |
+ proalign | 4 | {bio,bio-phylogeny} |
+ prottest | 4 | {bio-phylogeny,bio} |
pscan-chip | 4 | {bio} |
+ pymia | 4 | {imaging-dev} |
qcumber | 4 | {bio} |
quorum | 4 | {bio} |
- samblaster | 4 | {bio,covid-19} |
sibsim4 | 4 | {bio,cloud} |
- arden | 3 | {cloud,bio} |
+ stacks | 4 | {bio} |
+ arden | 3 | {bio,cloud} |
assemblytics | 3 | {bio} |
blimps | 3 | {bio} |
canu | 3 | {bio} |
- cufflinks | 3 | {cloud,bio} |
dicompyler | 3 | {oncology} |
elastix | 3 | {imaging} |
estscan | 3 | {bio} |
+ fastml | 3 | {bio} |
getdata | 3 | {bio} |
ipig | 3 | {bio} |
jmodeltest | 3 | {bio-phylogeny,bio} |
- mhap | 3 | {bio-ngs,bio} |
+ mhap | 3 | {bio,bio-ngs} |
microbegps | 3 | {bio} |
- nifticlib | 3 | {imaging-dev} |
phybin | 3 | {bio} |
rtax | 3 | {cloud,bio} |
- salmon | 3 | {covid-19,bio} |
+ salmon | 3 | {bio,covid-19} |
+ samblaster | 3 | {covid-19,bio} |
sift | 3 | {bio} |
soapsnp | 3 | {bio} |
- stacks | 3 | {bio} |
surankco | 3 | {bio} |
tvc | 3 | {bio} |
zalign | 3 | {bio,cloud} |
- blasr | 2 | {bio-ngs,bio} |
+ blasr | 2 | {bio,bio-ngs} |
busco | 2 | {bio,covid-19} |
- clonalframeml | 2 | {covid-19,bio} |
+ clonalframeml | 2 | {bio,covid-19} |
delly | 2 | {covid-19,bio} |
- dindel | 2 | {bio} |
- fastml | 2 | {bio} |
fsm-lite | 2 | {bio} |
gatb-core | 2 | {bio} |
hinge | 2 | {bio} |
libmuscle | 2 | {bio-dev} |
logol | 2 | {bio} |
metaphlan2 | 2 | {bio} |
- oscar | 2 | {tools,practice,data} |
+ oscar | 2 | {practice,data,tools} |
placnet | 2 | {bio} |
plasmidseeker | 2 | {bio} |
salmid | 2 | {bio} |
- seqan | 2 | {bio-dev} |
sga | 2 | {bio} |
+ sight | 2 | {imaging} |
soapaligner | 2 | {bio} |
spaced | 2 | {bio} |
sprai | 2 | {bio} |
@@ -169,36 +168,34 @@ Last-Update: Sun, 24 Jan 2021 01:42:04 +0000
opensurgsim | 1 | {imaging-dev} |
papyrus | 1 | {imaging-dev} |
pbseqlib | 1 | {bio-dev} |
- pilercr | 1 | {bio} |
plasmidid | 1 | {covid-19,bio} |
segemehl | 1 | {bio} |
seq-gen | 1 | {bio} |
- sight | 1 | {imaging} |
trace2dbest | 1 | {bio} |
varscan | 1 | {bio,covid-19} |
- acedb | 0 | {bio,cloud} |
+ acedb | 0 | {cloud,bio} |
atropos | 0 | {bio} |
bbmap | 0 | {bio,covid-19} |
biojava4-live | 0 | {bio-dev} |
biosyntax | 0 | {bio} |
bmtk | 0 | {psychology} |
- bustools | 0 | {bio,covid-19} |
+ bustools | 0 | {covid-19,bio} |
camp | 0 | {imaging-dev} |
ctn | 0 | {imaging-dev} |
- dextractor | 0 | {bio,covid-19} |
+ dextractor | 0 | {covid-19,bio} |
eegdev | 0 | {imaging-dev} |
emboss-explorer | 0 | {bio} |
emmax | 0 | {bio} |
fis-gtm | 0 | {his} |
htscodecs | 0 | {covid-19,bio-dev} |
- intake | 0 | {bio,bio-dev} |
+ intake | 0 | {bio-dev,bio} |
kmerresistance | 0 | {bio} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
libbioparser-dev | 0 | {bio-dev} |
libics | 0 | {covid-19,imaging-dev} |
libjloda-java | 0 | {bio-dev} |
- libmaus2 | 0 | {covid-19,bio-dev} |
+ libmaus2 | 0 | {bio-dev,covid-19} |
libmialm | 0 | {imaging-dev} |
libpsortb | 0 | {bio-dev} |
libvistaio | 0 | {imaging-dev} |
@@ -208,7 +205,7 @@ Last-Update: Sun, 24 Jan 2021 01:42:04 +0000
mia | 0 | {imaging-dev} |
miaviewit | 0 | {imaging-dev} |
milib | 0 | {covid-19,bio-dev} |
- nanosv | 0 | {covid-19,bio} |
+ nanosv | 0 | {bio,covid-19} |
nifticlib | 0 | {imaging-dev} |
openslide | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
@@ -216,28 +213,29 @@ Last-Update: Sun, 24 Jan 2021 01:42:04 +0000
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
pigx-rnaseq | 0 | {bio,covid-19} |
+ pilercr | 0 | {bio} |
pique | 0 | {bio} |
- pplacer | 0 | {bio-phylogeny,bio,covid-19} |
+ pplacer | 0 | {covid-19,bio-phylogeny,bio} |
python-bcbio-gff | 0 | {bio-dev} |
python-seqcluster | 0 | {bio} |
- python-seqcluster | 0 | {bio-dev,covid-19} |
+ python-seqcluster | 0 | {covid-19,bio-dev} |
q2-sample-classifier | 0 | {bio-dev,bio} |
resfinder-db | 0 | {bio} |
sambamba | 0 | {bio} |
samtools-legacy | 0 | {bio-dev} |
sbmltoolbox | 0 | {bio-dev} |
- shovill | 0 | {bio,covid-19} |
+ shovill | 0 | {covid-19,bio} |
simpleitk | 0 | {imaging-dev} |
simrisc | 0 | {oncology} |
skesa | 0 | {bio} |
skewer | 0 | {bio} |
- smrtanalysis | 0 | {covid-19,bio} |
+ smrtanalysis | 0 | {bio,covid-19} |
spaln | 0 | {bio,covid-19} |
svim | 0 | {bio} |
- thesias | 0 | {covid-19,bio} |
- tophat-recondition | 0 | {bio,covid-19} |
+ thesias | 0 | {bio,covid-19} |
+ tophat-recondition | 0 | {covid-19,bio} |
varna | 0 | {bio} |
- vienna-rna | 0 | {bio,covid-19} |
+ vienna-rna | 0 | {covid-19,bio} |
vtk-dicom | 0 | {imaging-dev} |
xdffileio | 0 | {imaging-dev} |
yanagiba | 0 | {covid-19,bio} |
@@ -245,5 +243,5 @@ Last-Update: Sun, 24 Jan 2021 01:42:04 +0000
orthanc-gdcm | -1 | {imaging} |
orthanc-python | -1 | {covid-19} |
sight | -1 | {imaging-dev} |
-(275 rows)
+(273 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/703fb34447b8653ae7098a407afa406f1c0b4b66
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/703fb34447b8653ae7098a407afa406f1c0b4b66
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