[med-svn] [Git][med-team/bcbio][upstream] New upstream version 1.2.5

[Steffen Möller]

Steffen Möller pushed to branch upstream at Debian Med / bcbio


Commits:
1c20dafa by Steffen Moeller at 2021-01-26T13:53:56+01:00
New upstream version 1.2.5
- - - - -


30 changed files:

- HISTORY.md
- MANIFEST.in
- README.md
- bcbio/bam/__init__.py
- bcbio/bam/cram.py
- bcbio/chipseq/antibodies.py
- bcbio/chipseq/atac.py
- bcbio/chipseq/macs2.py
- bcbio/chipseq/peaks.py
- + bcbio/dragen/__init__.py
- + bcbio/dragen/dragen.py
- bcbio/heterogeneity/loh.py
- bcbio/install.py
- bcbio/ngsalign/alignprep.py
- bcbio/ngsalign/postalign.py
- bcbio/pipeline/datadict.py
- bcbio/pipeline/genome.py
- bcbio/pipeline/main.py
- bcbio/pipeline/rnaseq.py
- bcbio/pipeline/run_info.py
- bcbio/pipeline/sample.py
- bcbio/rnaseq/count.py
- bcbio/rnaseq/featureCounts.py
- bcbio/rnaseq/salmon.py
- + bcbio/scripts/R/bcbio2se.R
- + bcbio/scripts/R/se2qc.Rmd
- bcbio/structural/__init__.py
- bcbio/structural/delly.py
- bcbio/structural/lumpy.py
- bcbio/structural/purecn.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/bcbio/-/commit/1c20dafa2114b4a1649475df5bbb3bd24a22a18c

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