[med-svn] [Git][med-team/picard-tools][master] 3 commits: routine-update: New upstream version

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / picard-tools


Commits:
154b67c7 by Andreas Tille at 2021-01-27T18:07:24+01:00
routine-update: New upstream version

- - - - -
83ec790b by Andreas Tille at 2021-01-27T18:07:26+01:00
New upstream version 2.24.1+dfsg
- - - - -
1911b232 by Andreas Tille at 2021-01-27T18:08:04+01:00
Update upstream source from tag 'upstream/2.24.1+dfsg'

Update to upstream version '2.24.1+dfsg'
with Debian dir dcb3c3ed688b4deeef1a0276df0c6dad854b002a
- - - - -


3 changed files:

- debian/changelog
- src/main/java/picard/sam/HitsForInsert.java
- + testdata/picard/indices/index_test_b.bam.bai


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,9 @@
+picard-tools (2.24.1+dfsg-1) UNRELEASED; urgency=medium
+
+  * New upstream version
+
+ -- Andreas Tille <tille at debian.org>  Wed, 27 Jan 2021 18:07:24 +0100
+
 picard-tools (2.24.0+dfsg-1) unstable; urgency=medium
 
   * Team upload.


=====================================
src/main/java/picard/sam/HitsForInsert.java
=====================================
@@ -130,7 +130,9 @@ class HitsForInsert {
      */
     public SAMRecord getFragment(final int i) {
         final SAMRecord samRecord = firstOfPairOrFragment.get(i);
-        if (samRecord.getReadPairedFlag()) throw new UnsupportedOperationException("getFragment called for paired read");
+        if (samRecord.getReadPairedFlag()) {
+            throw new UnsupportedOperationException("getFragment called for paired read: " + samRecord.toString());
+        }
         return samRecord;
     }
 


=====================================
testdata/picard/indices/index_test_b.bam.bai
=====================================
Binary files /dev/null and b/testdata/picard/indices/index_test_b.bam.bai differ



View it on GitLab: https://salsa.debian.org/med-team/picard-tools/-/compare/15cff3129061670ba13b4f46baea41df1a5cd13e...1911b2326152777415200cd3d64ce51644bb1c3f

-- 
View it on GitLab: https://salsa.debian.org/med-team/picard-tools/-/compare/15cff3129061670ba13b4f46baea41df1a5cd13e...1911b2326152777415200cd3d64ce51644bb1c3f
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