[med-svn] [Git][med-team/bbmap][master] 5 commits: routine-update: New upstream version

[Nilesh Patra]

Nilesh Patra pushed to branch master at Debian Med / bbmap


Commits:
615fed81 by Nilesh Patra at 2021-01-28T17:09:03+05:30
routine-update: New upstream version

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6847642f by Nilesh Patra at 2021-01-28T17:09:05+05:30
New upstream version 38.88+dfsg
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2dbaba20 by Nilesh Patra at 2021-01-28T17:09:15+05:30
Update upstream source from tag 'upstream/38.88+dfsg'

Update to upstream version '38.88+dfsg'
with Debian dir 02562836624470b7cd77d4c602c3fdc0afa78da6
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c025462f by Nilesh Patra at 2021-01-28T17:09:15+05:30
routine-update: Standards-Version: 4.5.1

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5b655177 by Nilesh Patra at 2021-01-28T17:09:34+05:30
routine-update: Ready to upload to unstable

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30 changed files:

- README.md
- applyvariants.sh
- bbduk.sh
- current/align2/AbstractMapper.java
- current/align2/BBIndex.java
- current/align2/BBIndex5.java
- current/align2/BBIndexAcc.java
- current/align2/BBIndexPacBio.java
- current/align2/BBIndexPacBioSkimmer.java
- current/align2/BBSplitter.java
- current/align2/BBWrap.java
- current/align2/BandedAlignerJNI.java
- current/align2/CompareSamFiles.java
- current/align2/GradeSamFile.java
- current/align2/IndexMaker4.java
- current/align2/IndexMaker5.java
- current/align2/MakeRocCurve.java
- current/align2/MultiStateAligner11tsJNI.java
- current/align2/PrintTime.java
- current/align2/RandomReads3.java
- current/aligner/AllToAll.java
- current/aligner/SingleStateAlignerPacBioAdapter.java
- current/assemble/AbstractBuildThread.java
- current/assemble/AbstractExploreThread.java
- current/assemble/AbstractProcessContigThread.java
- current/assemble/BubblePopper.java
- current/assemble/KmerCompressor.java
- current/assemble/Postfilter.java
- current/assemble/TadPipe.java
- current/assemble/Tadpole.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/bbmap/-/compare/b8ffc900fcdc004876c80c1cacf9acfd2dd022a2...5b6551770e9fbed0bb8f4199e0ff9a160fac3a23

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View it on GitLab: https://salsa.debian.org/med-team/bbmap/-/compare/b8ffc900fcdc004876c80c1cacf9acfd2dd022a2...5b6551770e9fbed0bb8f4199e0ff9a160fac3a23
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