Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
590c7f66 by Andreas Tille at 2021-01-28T13:42:26+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,13 +1,13 @@
-Last-Update: Thu, 28 Jan 2021 01:42:04 +0000
+Last-Update: Thu, 28 Jan 2021 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 176 | {covid-19,imaging} |
- orthanc | 98 | {practice,covid-19,imaging} |
- orthanc-wsi | 53 | {laboratory,imaging,his,covid-19,practice,oncology} |
- gdcm | 33 | {imaging-dev} |
- amide | 31 | {imaging} |
- dicom3tools | 29 | {imaging} |
+ dcmtk | 177 | {imaging,covid-19} |
+ orthanc | 97 | {practice,imaging,covid-19} |
+ orthanc-wsi | 52 | {laboratory,practice,his,oncology,covid-19,imaging} |
+ gdcm | 34 | {imaging-dev} |
+ amide | 32 | {imaging} |
+ dicom3tools | 30 | {imaging} |
htsjdk | 27 | {bio-dev} |
dicomscope | 24 | {imaging} |
dcm2niix | 23 | {imaging} |
@@ -16,48 +16,50 @@ Last-Update: Thu, 28 Jan 2021 01:42:04 +0000
odin | 17 | {imaging,imaging-dev} |
plastimatch | 16 | {imaging} |
dicomnifti | 15 | {imaging} |
- gnumed-server | 14 | {practice,covid-19} |
+ gnumed-server | 15 | {covid-19,practice} |
minc-tools | 14 | {imaging} |
- ngs-sdk | 14 | {bio-dev} |
gdcm | 13 | {imaging-dev} |
+ ngs-sdk | 13 | {bio-dev} |
pixelmed | 13 | {imaging} |
insighttoolkit4 | 12 | {imaging-dev} |
- king | 12 | {typesetting,imaging} |
+ king | 12 | {imaging,typesetting} |
invesalius | 11 | {imaging} |
openslide | 11 | {imaging} |
mia | 9 | {imaging} |
biojava-live | 8 | {bio-dev} |
jebl2 | 8 | {bio-dev} |
+ multiqc | 8 | {covid-19,bio} |
nifti2dicom | 8 | {imaging} |
orthanc-webviewer | 8 | {imaging} |
vtk-dicom | 8 | {imaging} |
adun.app | 7 | {bio} |
+ bamkit | 7 | {covid-19,bio} |
librg-utils-perl | 7 | {bio} |
mauve-aligner | 7 | {bio} |
nifti2dicom | 7 | {imaging} |
- bamkit | 6 | {bio,covid-19} |
+ obitools | 7 | {bio} |
bio-tradis | 6 | {bio,bio-dev} |
ea-utils | 6 | {bio} |
- fastlink | 6 | {cloud,bio} |
+ fastlink | 6 | {bio,cloud} |
+ ghmm | 6 | {bio} |
+ jellyfish1 | 6 | {bio} |
+ lagan | 6 | {bio} |
libminc | 6 | {imaging-dev} |
libncl | 6 | {bio} |
melting | 6 | {bio,cloud} |
mipe | 6 | {bio,cloud} |
- multiqc | 6 | {covid-19,bio} |
ngs-sdk | 6 | {bio-dev} |
- obitools | 6 | {bio} |
perm | 6 | {cloud,bio} |
- prime-phylo | 6 | {cloud,bio} |
+ prime-phylo | 6 | {bio,cloud} |
rambo-k | 6 | {bio} |
runcircos-gui | 6 | {bio} |
saint | 6 | {bio} |
seqsero | 6 | {bio} |
+ tracetuner | 6 | {bio} |
+ biomaj3-cli | 5 | {cloud} |
ecopcr | 5 | {bio} |
embassy-domainatrix | 5 | {bio,cloud} |
- embassy-domsearch | 5 | {bio,cloud} |
- ghmm | 5 | {bio} |
- jellyfish1 | 5 | {bio} |
- lagan | 5 | {bio} |
+ embassy-domsearch | 5 | {cloud,bio} |
lamarc | 5 | {bio} |
librdp-taxonomy-tree-java | 5 | {bio-dev} |
ngs-sdk | 5 | {bio-dev} |
@@ -65,62 +67,61 @@ Last-Update: Thu, 28 Jan 2021 01:42:04 +0000
phast | 5 | {bio} |
rdp-alignment | 5 | {bio} |
rdp-classifier | 5 | {bio} |
- spread-phy | 5 | {bio-phylogeny,bio} |
+ spread-phy | 5 | {bio,bio-phylogeny} |
staden | 5 | {bio} |
- tracetuner | 5 | {bio} |
treeview | 5 | {bio-phylogeny,bio} |
anfo | 4 | {cloud,bio} |
bart-view | 4 | {imaging} |
beast-mcmc | 4 | {bio-phylogeny,bio} |
- biomaj3-cli | 4 | {cloud} |
bitseq | 4 | {bio} |
brig | 4 | {bio} |
clonalorigin | 4 | {bio} |
- cufflinks | 4 | {bio,cloud} |
+ cufflinks | 4 | {cloud,bio} |
embassy-domalign | 4 | {cloud,bio} |
+ estscan | 4 | {bio} |
libdivsufsort | 4 | {bio-dev} |
libpal-java | 4 | {bio-dev} |
libsbml | 4 | {bio-dev} |
nifticlib | 4 | {imaging-dev} |
orthanc-mysql | 4 | {imaging} |
orthanc-postgresql | 4 | {imaging} |
- paraclu | 4 | {cloud,bio} |
+ paraclu | 4 | {bio,cloud} |
pbdagcon | 4 | {bio} |
- phyutility | 4 | {cloud,bio} |
+ phyutility | 4 | {bio,cloud} |
piler | 4 | {bio} |
proalign | 4 | {bio,bio-phylogeny} |
- prottest | 4 | {bio-phylogeny,bio} |
+ prottest | 4 | {bio,bio-phylogeny} |
pscan-chip | 4 | {bio} |
pymia | 4 | {imaging-dev} |
qcumber | 4 | {bio} |
quorum | 4 | {bio} |
- sibsim4 | 4 | {bio,cloud} |
+ sibsim4 | 4 | {cloud,bio} |
stacks | 4 | {bio} |
arden | 3 | {bio,cloud} |
assemblytics | 3 | {bio} |
blimps | 3 | {bio} |
+ busco | 3 | {covid-19,bio} |
canu | 3 | {bio} |
dicompyler | 3 | {oncology} |
elastix | 3 | {imaging} |
- estscan | 3 | {bio} |
getdata | 3 | {bio} |
ipig | 3 | {bio} |
- jmodeltest | 3 | {bio-phylogeny,bio} |
+ jmodeltest | 3 | {bio,bio-phylogeny} |
mhap | 3 | {bio,bio-ngs} |
microbegps | 3 | {bio} |
- rtax | 3 | {cloud,bio} |
+ rtax | 3 | {bio,cloud} |
salmid | 3 | {bio} |
- salmon | 3 | {bio,covid-19} |
- samblaster | 3 | {covid-19,bio} |
+ salmon | 3 | {covid-19,bio} |
sift | 3 | {bio} |
soapsnp | 3 | {bio} |
surankco | 3 | {bio} |
tvc | 3 | {bio} |
- zalign | 3 | {bio,cloud} |
+ yaha | 3 | {bio} |
+ zalign | 3 | {cloud,bio} |
blasr | 2 | {bio,bio-ngs} |
- busco | 2 | {bio,covid-19} |
+ cat-bat | 2 | {covid-19,bio} |
clonalframeml | 2 | {bio,covid-19} |
- delly | 2 | {covid-19,bio} |
+ delly | 2 | {bio,covid-19} |
fastml | 2 | {bio} |
fsm-lite | 2 | {bio} |
gatb-core | 2 | {bio} |
@@ -128,9 +129,10 @@ Last-Update: Thu, 28 Jan 2021 01:42:04 +0000
libmuscle | 2 | {bio-dev} |
logol | 2 | {bio} |
metaphlan2 | 2 | {bio} |
- oscar | 2 | {practice,data,tools} |
+ oscar | 2 | {data,tools,practice} |
placnet | 2 | {bio} |
plasmidseeker | 2 | {bio} |
+ samblaster | 2 | {covid-19,bio} |
sga | 2 | {bio} |
sight | 2 | {imaging} |
soapaligner | 2 | {bio} |
@@ -138,9 +140,11 @@ Last-Update: Thu, 28 Jan 2021 01:42:04 +0000
sprai | 2 | {bio} |
srf | 2 | {bio-dev} |
suitename | 2 | {bio} |
- yaha | 2 | {bio} |
+ svim | 2 | {bio} |
+ atropos | 1 | {bio} |
bambamc | 1 | {bio-dev} |
- cat-bat | 1 | {bio,covid-19} |
+ dextractor | 1 | {bio,covid-19} |
+ emmax | 1 | {bio} |
gatb-core | 1 | {bio-dev} |
gifticlib | 1 | {imaging-dev} |
libbio-mage-utils-perl | 1 | {bio-dev} |
@@ -164,27 +168,28 @@ Last-Update: Thu, 28 Jan 2021 01:42:04 +0000
libstatgen | 1 | {bio-dev} |
nanosv | 1 | {bio,covid-19} |
ncbi-vdb | 1 | {bio-dev} |
+ openslide | 1 | {imaging-dev} |
opensurgsim | 1 | {imaging-dev} |
papyrus | 1 | {imaging-dev} |
pbseqlib | 1 | {bio-dev} |
+ python-bcbio-gff | 1 | {bio-dev} |
segemehl | 1 | {bio} |
seq-gen | 1 | {bio} |
- svim | 1 | {bio} |
+ spaln | 1 | {bio,covid-19} |
+ tophat-recondition | 1 | {covid-19,bio} |
trace2dbest | 1 | {bio} |
- varscan | 1 | {bio,covid-19} |
+ varscan | 1 | {covid-19,bio} |
+ yanagiba | 1 | {covid-19,bio} |
acedb | 0 | {cloud,bio} |
- atropos | 0 | {bio} |
- bbmap | 0 | {bio,covid-19} |
+ bbmap | 0 | {covid-19,bio} |
biojava4-live | 0 | {bio-dev} |
biosyntax | 0 | {bio} |
bmtk | 0 | {psychology} |
- bustools | 0 | {covid-19,bio} |
+ bustools | 0 | {bio,covid-19} |
camp | 0 | {imaging-dev} |
ctn | 0 | {imaging-dev} |
- dextractor | 0 | {covid-19,bio} |
eegdev | 0 | {imaging-dev} |
emboss-explorer | 0 | {bio} |
- emmax | 0 | {bio} |
fis-gtm | 0 | {his} |
htscodecs | 0 | {covid-19,bio-dev} |
intake | 0 | {bio-dev,bio} |
@@ -192,7 +197,7 @@ Last-Update: Thu, 28 Jan 2021 01:42:04 +0000
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
libbioparser-dev | 0 | {bio-dev} |
- libics | 0 | {covid-19,imaging-dev} |
+ libics | 0 | {imaging-dev,covid-19} |
libjloda-java | 0 | {bio-dev} |
libmaus2 | 0 | {bio-dev,covid-19} |
libmialm | 0 | {imaging-dev} |
@@ -203,11 +208,10 @@ Last-Update: Thu, 28 Jan 2021 01:42:04 +0000
metastudent-data-2 | 0 | {bio} |
mia | 0 | {imaging-dev} |
miaviewit | 0 | {imaging-dev} |
- milib | 0 | {covid-19,bio-dev} |
+ milib | 0 | {bio-dev,covid-19} |
mssstest | 0 | {tools} |
nifticlib | 0 | {imaging-dev} |
opencfu | 0 | {laboratory} |
- openslide | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
parallel-fastq-dump | 0 | {covid-19} |
pbcopper | 0 | {bio-dev} |
@@ -215,12 +219,11 @@ Last-Update: Thu, 28 Jan 2021 01:42:04 +0000
pigx-rnaseq | 0 | {bio,covid-19} |
pilercr | 0 | {bio} |
pique | 0 | {bio} |
- plasmidid | 0 | {covid-19,bio} |
- pplacer | 0 | {covid-19,bio-phylogeny,bio} |
- python-bcbio-gff | 0 | {bio-dev} |
+ plasmidid | 0 | {bio,covid-19} |
+ pplacer | 0 | {covid-19,bio,bio-phylogeny} |
+ python-seqcluster | 0 | {bio-dev,covid-19} |
python-seqcluster | 0 | {bio} |
- python-seqcluster | 0 | {covid-19,bio-dev} |
- q2-sample-classifier | 0 | {bio-dev,bio} |
+ q2-sample-classifier | 0 | {bio,bio-dev} |
resfinder-db | 0 | {bio} |
sambamba | 0 | {bio} |
samtools-legacy | 0 | {bio-dev} |
@@ -230,15 +233,12 @@ Last-Update: Thu, 28 Jan 2021 01:42:04 +0000
simrisc | 0 | {oncology} |
skesa | 0 | {bio} |
skewer | 0 | {bio} |
- smrtanalysis | 0 | {bio,covid-19} |
- spaln | 0 | {bio,covid-19} |
+ smrtanalysis | 0 | {covid-19,bio} |
thesias | 0 | {bio,covid-19} |
- tophat-recondition | 0 | {covid-19,bio} |
varna | 0 | {bio} |
vienna-rna | 0 | {covid-19,bio} |
vtk-dicom | 0 | {imaging-dev} |
xdffileio | 0 | {imaging-dev} |
- yanagiba | 0 | {covid-19,bio} |
orthanc-gdcm | -1 | {imaging} |
orthanc-python | -1 | {covid-19} |
sight | -1 | {imaging-dev} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/590c7f66179a37d21dcfde52b046c54e2f80d3e2
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/590c7f66179a37d21dcfde52b046c54e2f80d3e2
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