Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
3cf3e8ea by Andreas Tille at 2021-01-29T13:42:19+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,54 +1,52 @@
-Last-Update: Fri, 29 Jan 2021 01:42:03 +0000
+Last-Update: Fri, 29 Jan 2021 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 177 | {imaging,covid-19} |
- orthanc | 97 | {practice,imaging,covid-19} |
- orthanc-wsi | 52 | {laboratory,practice,his,oncology,covid-19,imaging} |
- gdcm | 34 | {imaging-dev} |
- amide | 32 | {imaging} |
+ dcmtk | 175 | {imaging,covid-19} |
+ orthanc | 95 | {practice,imaging,covid-19} |
+ orthanc-wsi | 53 | {laboratory,practice,his,oncology,covid-19,imaging} |
+ gdcm | 33 | {imaging-dev} |
+ amide | 31 | {imaging} |
dicom3tools | 30 | {imaging} |
htsjdk | 27 | {bio-dev} |
dicomscope | 24 | {imaging} |
- dcm2niix | 23 | {imaging} |
- nifticlib | 20 | {imaging} |
- gdcm | 19 | {imaging,covid-19} |
- odin | 17 | {imaging,imaging-dev} |
- plastimatch | 16 | {imaging} |
- dicomnifti | 15 | {imaging} |
+ dcm2niix | 21 | {imaging} |
+ gdcm | 20 | {imaging,covid-19} |
+ nifticlib | 18 | {imaging} |
+ odin | 16 | {imaging,imaging-dev} |
gnumed-server | 15 | {covid-19,practice} |
- minc-tools | 14 | {imaging} |
+ plastimatch | 15 | {imaging} |
+ dicomnifti | 14 | {imaging} |
gdcm | 13 | {imaging-dev} |
- ngs-sdk | 13 | {bio-dev} |
+ minc-tools | 13 | {imaging} |
pixelmed | 13 | {imaging} |
insighttoolkit4 | 12 | {imaging-dev} |
- king | 12 | {imaging,typesetting} |
- invesalius | 11 | {imaging} |
- openslide | 11 | {imaging} |
- mia | 9 | {imaging} |
+ king | 11 | {imaging,typesetting} |
+ ngs-sdk | 11 | {bio-dev} |
+ invesalius | 10 | {imaging} |
+ openslide | 10 | {imaging} |
+ adun.app | 8 | {bio} |
biojava-live | 8 | {bio-dev} |
jebl2 | 8 | {bio-dev} |
+ mia | 8 | {imaging} |
multiqc | 8 | {covid-19,bio} |
- nifti2dicom | 8 | {imaging} |
- orthanc-webviewer | 8 | {imaging} |
vtk-dicom | 8 | {imaging} |
- adun.app | 7 | {bio} |
bamkit | 7 | {covid-19,bio} |
+ ea-utils | 7 | {bio} |
librg-utils-perl | 7 | {bio} |
mauve-aligner | 7 | {bio} |
+ ngs-sdk | 7 | {bio-dev} |
nifti2dicom | 7 | {imaging} |
obitools | 7 | {bio} |
+ orthanc-webviewer | 7 | {imaging} |
bio-tradis | 6 | {bio,bio-dev} |
- ea-utils | 6 | {bio} |
fastlink | 6 | {bio,cloud} |
ghmm | 6 | {bio} |
- jellyfish1 | 6 | {bio} |
lagan | 6 | {bio} |
libminc | 6 | {imaging-dev} |
libncl | 6 | {bio} |
melting | 6 | {bio,cloud} |
mipe | 6 | {bio,cloud} |
- ngs-sdk | 6 | {bio-dev} |
perm | 6 | {cloud,bio} |
prime-phylo | 6 | {bio,cloud} |
rambo-k | 6 | {bio} |
@@ -60,9 +58,9 @@ Last-Update: Fri, 29 Jan 2021 01:42:03 +0000
ecopcr | 5 | {bio} |
embassy-domainatrix | 5 | {bio,cloud} |
embassy-domsearch | 5 | {cloud,bio} |
+ jellyfish1 | 5 | {bio} |
lamarc | 5 | {bio} |
librdp-taxonomy-tree-java | 5 | {bio-dev} |
- ngs-sdk | 5 | {bio-dev} |
orthanc-dicomweb | 5 | {covid-19,imaging} |
phast | 5 | {bio} |
rdp-alignment | 5 | {bio} |
@@ -75,13 +73,16 @@ Last-Update: Fri, 29 Jan 2021 01:42:03 +0000
beast-mcmc | 4 | {bio-phylogeny,bio} |
bitseq | 4 | {bio} |
brig | 4 | {bio} |
+ busco | 4 | {covid-19,bio} |
clonalorigin | 4 | {bio} |
cufflinks | 4 | {cloud,bio} |
+ elastix | 4 | {imaging} |
embassy-domalign | 4 | {cloud,bio} |
estscan | 4 | {bio} |
libdivsufsort | 4 | {bio-dev} |
libpal-java | 4 | {bio-dev} |
libsbml | 4 | {bio-dev} |
+ ngs-sdk | 4 | {bio-dev} |
nifticlib | 4 | {imaging-dev} |
orthanc-mysql | 4 | {imaging} |
orthanc-postgresql | 4 | {imaging} |
@@ -95,22 +96,20 @@ Last-Update: Fri, 29 Jan 2021 01:42:03 +0000
pymia | 4 | {imaging-dev} |
qcumber | 4 | {bio} |
quorum | 4 | {bio} |
+ salmid | 4 | {bio} |
sibsim4 | 4 | {cloud,bio} |
stacks | 4 | {bio} |
arden | 3 | {bio,cloud} |
assemblytics | 3 | {bio} |
blimps | 3 | {bio} |
- busco | 3 | {covid-19,bio} |
canu | 3 | {bio} |
dicompyler | 3 | {oncology} |
- elastix | 3 | {imaging} |
getdata | 3 | {bio} |
ipig | 3 | {bio} |
jmodeltest | 3 | {bio,bio-phylogeny} |
mhap | 3 | {bio,bio-ngs} |
microbegps | 3 | {bio} |
rtax | 3 | {bio,cloud} |
- salmid | 3 | {bio} |
salmon | 3 | {covid-19,bio} |
sift | 3 | {bio} |
soapsnp | 3 | {bio} |
@@ -140,7 +139,6 @@ Last-Update: Fri, 29 Jan 2021 01:42:03 +0000
sprai | 2 | {bio} |
srf | 2 | {bio-dev} |
suitename | 2 | {bio} |
- svim | 2 | {bio} |
atropos | 1 | {bio} |
bambamc | 1 | {bio-dev} |
dextractor | 1 | {bio,covid-19} |
@@ -176,6 +174,7 @@ Last-Update: Fri, 29 Jan 2021 01:42:03 +0000
segemehl | 1 | {bio} |
seq-gen | 1 | {bio} |
spaln | 1 | {bio,covid-19} |
+ svim | 1 | {bio} |
tophat-recondition | 1 | {covid-19,bio} |
trace2dbest | 1 | {bio} |
varscan | 1 | {covid-19,bio} |
@@ -221,8 +220,8 @@ Last-Update: Fri, 29 Jan 2021 01:42:03 +0000
pique | 0 | {bio} |
plasmidid | 0 | {bio,covid-19} |
pplacer | 0 | {covid-19,bio,bio-phylogeny} |
- python-seqcluster | 0 | {bio-dev,covid-19} |
python-seqcluster | 0 | {bio} |
+ python-seqcluster | 0 | {bio-dev,covid-19} |
q2-sample-classifier | 0 | {bio,bio-dev} |
resfinder-db | 0 | {bio} |
sambamba | 0 | {bio} |
@@ -242,5 +241,5 @@ Last-Update: Fri, 29 Jan 2021 01:42:03 +0000
orthanc-gdcm | -1 | {imaging} |
orthanc-python | -1 | {covid-19} |
sight | -1 | {imaging-dev} |
-(272 rows)
+(271 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/3cf3e8ea41e8084d267287a08a363254268da087
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/3cf3e8ea41e8084d267287a08a363254268da087
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