[med-svn] [Git][med-team/resfinder][master] 15 commits: New upstream version 4.1.5

[Nilesh Patra (@nilesh)]

Nilesh Patra pushed to branch master at Debian Med / resfinder


Commits:
327f6198 by Nilesh Patra at 2021-07-04T17:16:42+05:30
New upstream version 4.1.5
- - - - -
76003da8 by Nilesh Patra at 2021-07-04T17:16:43+05:30
Update upstream source from tag 'upstream/4.1.5'

Update to upstream version '4.1.5'
with Debian dir 313fda68c383d0d41188be06381c4344b76ae8ea
- - - - -
485b567c by Nilesh Patra at 2021-07-04T17:20:10+05:30
Remove d/p/fix_syntax.patch: fixed upstream

- - - - -
9c66efcd by Nilesh Patra at 2021-07-04T17:20:26+05:30
Refresh patch

- - - - -
ab035ad3 by Nilesh Patra at 2021-07-04T17:21:02+05:30
d/ch: Set version to 4.1.5

- - - - -
124042f4 by Nilesh Patra at 2021-07-04T12:26:42+00:00
Add Depends on kma, python3-git and python3-dateutil

- - - - -
0ce180ed by Nilesh Patra at 2021-07-04T18:09:33+05:30
d/tests/run-unit-test: Make autopkgtest functional

- - - - -
70ddd3c3 by Nilesh Patra at 2021-07-04T18:10:15+05:30
d/tests/control: Add Depends on ca-certificates, add restrictions on needs-internet

- - - - -
e4973205 by Nilesh Patra at 2021-07-04T18:13:55+05:30
d/p/fix_syntax.patch: Fix syntax in cge/pointfinder.py

- - - - -
1b9f45ad by Nilesh Patra at 2021-07-04T18:16:29+05:30
Declare compliance with policy 4.5.1

- - - - -
c77c2cd6 by Nilesh Patra at 2021-07-04T12:47:48+00:00
Update and fix manpage

- - - - -
488f218e by Nilesh Patra at 2021-07-04T12:54:15+00:00
d/p/fix-shebang.patch: Fix shebang in shell scripts

- - - - -
adab7472 by Nilesh Patra at 2021-07-04T12:56:53+00:00
d/rules: Fix shell script permissions, do not install .nf files

- - - - -
c8efefa7 by Nilesh Patra at 2021-07-04T13:04:01+00:00
Update d/u/metadata, Make yamllint happy

- - - - -
0950f3ff by Nilesh Patra at 2021-07-04T18:36:24+05:30
Interim changelog entry

- - - - -


30 changed files:

- README.md
- cge/out/result.py
- cge/out/util/generator.py
- cge/out/valueparsers.py
- cge/phenotype2genotype/isolate.py
- cge/pointfinder.py
- cge/resfinder.py
- cge/standardize_results.py
- + database_tests.md
- debian/changelog
- debian/control
- debian/createmanpages
- + debian/patches/fix-shebang.patch
- debian/patches/fix_path_in_testscript.patch
- debian/patches/fix_syntax.patch
- debian/patches/series
- − debian/resfinder.py.1
- debian/rules
- + debian/run_resfinder.py.1
- debian/tests/control
- debian/tests/run-unit-test
- debian/upstream/metadata
- dockerfile
- run_resfinder.py
- + scripts/env_variables.txt
- scripts/resfinder.nf
- scripts/resfinder_asm.nf
- + scripts/wdl/README.md
- + scripts/wdl/computerome.conf
- + scripts/wdl/input.json


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/resfinder/-/compare/5dfddc299f3f20dbf1650934eb4baa79e5303652...0950f3ff8b80b4e391fdafab20b7cd6471ded215

-- 
View it on GitLab: https://salsa.debian.org/med-team/resfinder/-/compare/5dfddc299f3f20dbf1650934eb4baa79e5303652...0950f3ff8b80b4e391fdafab20b7cd6471ded215
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20210704/86fa0334/attachment.htm>