[med-svn] [Git][med-team/ncbi-entrez-direct][master] ncbi-entrez-direct 14.6.20210224+dfsg-4: Refresh d/{efetch, einfo}.

[Aaron M. Ucko (@ucko)]

Aaron M. Ucko pushed to branch master at Debian Med / ncbi-entrez-direct


Commits:
1520ff49 by Aaron M. Ucko at 2021-07-08T17:36:26-04:00
ncbi-entrez-direct 14.6.20210224+dfsg-4: Refresh d/{efetch,einfo}.

debian/{efetch,einfo}: Refresh %ncbi_supported, taking care to include
undocumented options.  (In particular, ncbi-blast+'s get_species_taxids
uses efetch's undocumented -docsum shorthand.)  (Closes: #990741.)

- - - - -


3 changed files:

- debian/changelog
- debian/efetch
- debian/einfo


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,12 @@
+ncbi-entrez-direct (14.6.20210224+dfsg-4) unstable; urgency=medium
+
+  * debian/{efetch,einfo}: Refresh %ncbi_supported, taking care to include
+    undocumented options.  (In particular, ncbi-blast+'s
+    get_species_taxids uses efetch's undocumented -docsum shorthand.)
+    (Closes: #990741.)
+
+ -- Aaron M. Ucko <ucko at debian.org>  Thu, 08 Jul 2021 17:36:20 -0400
+
 ncbi-entrez-direct (14.6.20210224+dfsg-3) unstable; urgency=medium
 
   * debian/man/eblast.1: Extend deprecation notice to eblast.


=====================================
debian/efetch
=====================================
@@ -28,6 +28,7 @@ my %ncbi_supported = (
     'id'          => 's',
     'input'       => 's',
     'format'      => 's',
+    'docsum'      => undef,
     'style'       => 's',
     'mode'        => 's',
     'seq_start'   => 'i',
@@ -38,10 +39,14 @@ my %ncbi_supported = (
     'complexity'  => 'i',
     'chr_start'   => 'i',
     'chr_stop'    => 'i',
+    'showgi'      => undef,
     'extend'      => 'i',
     'extrafeat'   => 'i',
+    'showgaps'    => undef,
+    'show-gaps'   => undef,
     'start'       => 'i',
     'stop'        => 'i',
+    'api_key'     => 's',
     'raw'         => undef,
     'json'        => undef,
     'nogi'        => undef,
@@ -49,14 +54,26 @@ my %ncbi_supported = (
     'tool'        => 's',
     'pipe'        => undef,
     'help'        => undef,
+    'example'     => undef,
+    'examples'    => undef,
+    'error'       => undef,
+    'errors'      => undef,
     'silent'      => undef,
     'verbose'     => undef,
     'debug'       => undef,
+    'oldmode'     => undef,
+    'newmode'     => undef,
     'log'         => undef,
+    'compact'     => undef,
     'http'        => 's',
     'https'       => 's',
     'alias'       => 's',
-    'base'        => 's');
+    'base'        => 's',
+    'web'         => 's',
+    'step'        => 'i',
+    'label'       => 's',
+    'timer'       => undef,
+    'version'     => undef);
 
 my %ncbi_abbrev = ();
 {


=====================================
debian/einfo
=====================================
@@ -26,19 +26,36 @@ my $epub_keys  = 't';
 my %ncbi_supported = (
     'db'          => 's',
     'dbs'         => undef,
+    'field'       => undef,
     'fields'      => undef,
+    'link'        => undef,
     'links'       => undef,
+    'test'        => undef,
+    'tests'       => undef,
+    'api_key'     => undef,
     'email'       => 's',
     'tool'        => 's',
+    'repeat'      => undef,
+    'repeats'     => undef,
+    'error'       => undef,
+    'errors'      => undef,
     'help'        => undef,
     'silent'      => undef,
     'verbose'     => undef,
     'debug'       => undef,
+    'oldmode'     => undef,
+    'newmode'     => undef,
     'log'         => undef,
+    'compact'     => undef,
     'http'        => 's',
     'https'       => 's',
     'alias'       => 's',
-    'base'        => 's');
+    'base'        => 's',
+    'web'         => 's',
+    'step'        => 'i',
+    'label'       => 's',
+    'timer'       => undef,
+    'version'     => undef);
 
 my %ncbi_abbrev = ();
 {



View it on GitLab: https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/1520ff4905c64ad7badad55eb36596acef4b53a7

-- 
View it on GitLab: https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/1520ff4905c64ad7badad55eb36596acef4b53a7
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20210708/10fbc00b/attachment-0001.htm>