Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
7b5f33df by Andreas Tille at 2021-07-09T13:42:21+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,119 +1,114 @@
-Last-Update: Fri, 09 Jul 2021 01:42:04 +0000
+Last-Update: Fri, 09 Jul 2021 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 166 | {covid-19,imaging} |
- orthanc | 90 | {imaging,covid-19,practice} |
+ dcmtk | 169 | {covid-19,imaging} |
+ orthanc | 89 | {imaging,covid-19,practice} |
orthanc-wsi | 47 | {oncology,laboratory,imaging,covid-19,his,practice} |
- gdcm | 33 | {imaging-dev} |
- amide | 27 | {imaging} |
+ gdcm | 34 | {imaging-dev} |
+ amide | 28 | {imaging} |
+ htsjdk | 27 | {bio-dev} |
dicom3tools | 26 | {imaging} |
- htsjdk | 26 | {bio-dev} |
- dicomscope | 24 | {imaging} |
- openslide | 22 | {imaging} |
- odin | 20 | {imaging,imaging-dev} |
+ dicomscope | 26 | {imaging} |
dcm2niix | 19 | {imaging} |
+ odin | 19 | {imaging,imaging-dev} |
gdcm | 18 | {covid-19,imaging} |
- minc-tools | 14 | {imaging} |
- ngs-sdk | 13 | {bio-dev} |
- orthanc-webviewer | 13 | {imaging} |
- dicomnifti | 12 | {imaging} |
+ ngs-sdk | 15 | {bio-dev} |
+ minc-tools | 13 | {imaging} |
+ openslide | 13 | {imaging} |
gnumed-server | 12 | {practice,covid-19} |
insighttoolkit4 | 12 | {imaging-dev} |
+ orthanc-webviewer | 12 | {imaging} |
pixelmed | 12 | {imaging} |
- nifticlib | 11 | {imaging} |
- adun.app | 10 | {bio} |
- invesalius | 10 | {imaging} |
- mia | 8 | {imaging} |
+ dicomnifti | 11 | {imaging} |
+ invesalius | 11 | {imaging} |
+ adun.app | 9 | {bio} |
+ nifticlib | 9 | {imaging} |
+ gdcm | 8 | {imaging-dev} |
plastimatch | 8 | {imaging} |
- gdcm | 7 | {imaging-dev} |
libminc | 7 | {imaging-dev} |
+ mia | 7 | {imaging} |
ngs-sdk | 7 | {bio-dev} |
+ dicompyler | 6 | {oncology} |
libdivsufsort | 6 | {bio-dev} |
nifti2dicom | 6 | {imaging} |
nifticlib | 6 | {imaging-dev} |
openslide | 6 | {imaging-dev} |
sight | 6 | {imaging} |
busco | 5 | {bio,covid-19} |
- dicompyler | 5 | {oncology} |
ea-utils | 5 | {bio} |
- jebl2 | 5 | {bio-dev} |
king | 5 | {typesetting,imaging} |
librg-utils-perl | 5 | {bio} |
nifti2dicom | 5 | {imaging} |
orthanc-dicomweb | 5 | {covid-19,imaging} |
- biojava-live | 4 | {bio-dev} |
- lagan | 4 | {bio} |
- ngs-sdk | 4 | {bio-dev} |
- nipype | 4 | {imaging-dev,imaging} |
+ jebl2 | 4 | {bio-dev} |
oscar | 4 | {tools,data,practice} |
- phast | 4 | {bio} |
runcircos-gui | 4 | {bio} |
salmid | 4 | {bio} |
- salmon | 4 | {covid-19,bio} |
treeview | 4 | {bio,bio-phylogeny} |
bart-view | 3 | {imaging} |
- beast-mcmc | 3 | {bio-phylogeny,bio} |
- bitseq | 3 | {bio} |
+ biojava-live | 3 | {bio-dev} |
blasr | 3 | {bio,bio-ngs} |
elastix | 3 | {imaging} |
- embassy-domainatrix | 3 | {cloud,bio} |
- embassy-domalign | 3 | {cloud,bio} |
emboss-explorer | 3 | {bio} |
getdata | 3 | {bio} |
+ lagan | 3 | {bio} |
libsbml | 3 | {bio-dev} |
melting | 3 | {cloud,bio} |
- obitools | 3 | {bio} |
+ ngs-sdk | 3 | {bio-dev} |
+ nipype | 3 | {imaging-dev,imaging} |
orthanc-postgresql | 3 | {imaging} |
- saint | 3 | {bio} |
- spread-phy | 3 | {bio,bio-phylogeny} |
+ pbdagcon | 3 | {bio} |
+ phast | 3 | {bio} |
+ salmon | 3 | {covid-19,bio} |
stacks | 3 | {bio} |
tracetuner | 3 | {bio} |
- anfo | 2 | {bio,cloud} |
- arden | 2 | {bio,cloud} |
- assemblytics | 2 | {bio} |
- biomaj3-cli | 2 | {cloud} |
- bio-tradis | 2 | {bio,bio-dev} |
+ beast-mcmc | 2 | {bio-phylogeny,bio} |
+ bitseq | 2 | {bio} |
brig | 2 | {bio} |
canu | 2 | {bio} |
- clonalorigin | 2 | {bio} |
+ embassy-domainatrix | 2 | {cloud,bio} |
+ embassy-domalign | 2 | {cloud,bio} |
embassy-domsearch | 2 | {cloud,bio} |
- estscan | 2 | {bio} |
fsm-lite | 2 | {bio} |
gatb-core | 2 | {bio} |
ghmm | 2 | {bio} |
jellyfish1 | 2 | {bio} |
lamarc | 2 | {bio} |
- libncl | 2 | {bio} |
librdp-taxonomy-tree-java | 2 | {bio-dev} |
mhap | 2 | {bio,bio-ngs} |
+ obitools | 2 | {bio} |
orthanc-gdcm | 2 | {imaging} |
orthanc-mysql | 2 | {imaging} |
- pbdagcon | 2 | {bio} |
phyutility | 2 | {cloud,bio} |
piler | 2 | {bio} |
- prime-phylo | 2 | {cloud,bio} |
pymia | 2 | {imaging-dev} |
- quorum | 2 | {bio} |
rdp-classifier | 2 | {bio} |
+ saint | 2 | {bio} |
+ samblaster | 2 | {bio,covid-19} |
sibsim4 | 2 | {bio,cloud} |
- spaced | 2 | {bio} |
+ spread-phy | 2 | {bio,bio-phylogeny} |
staden | 2 | {bio} |
- tvc | 2 | {bio} |
- yaha | 2 | {bio} |
- zalign | 2 | {cloud,bio} |
+ anfo | 1 | {bio,cloud} |
+ arden | 1 | {bio,cloud} |
+ assemblytics | 1 | {bio} |
+ biomaj3-cli | 1 | {cloud} |
+ bio-tradis | 1 | {bio,bio-dev} |
blimps | 1 | {bio} |
cat-bat | 1 | {bio,covid-19} |
clonalframeml | 1 | {covid-19,bio} |
+ clonalorigin | 1 | {bio} |
cufflinks | 1 | {bio,cloud} |
delly | 1 | {bio,covid-19} |
ecopcr | 1 | {bio} |
+ estscan | 1 | {bio} |
fastml | 1 | {bio} |
gifticlib | 1 | {imaging-dev} |
hinge | 1 | {bio} |
ipig | 1 | {bio} |
jmodeltest | 1 | {bio-phylogeny,bio} |
libctapimkt | 1 | {practice} |
+ libncl | 1 | {bio} |
libpal-java | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
logol | 1 | {bio} |
@@ -126,14 +121,15 @@ Last-Update: Fri, 09 Jul 2021 01:42:04 +0000
perm | 1 | {bio,cloud} |
placnet | 1 | {bio} |
plasmidseeker | 1 | {bio} |
+ prime-phylo | 1 | {cloud,bio} |
proalign | 1 | {bio,bio-phylogeny} |
pscan-chip | 1 | {bio} |
qcumber | 1 | {bio} |
+ quorum | 1 | {bio} |
rambo-k | 1 | {bio} |
rdp-alignment | 1 | {bio} |
rtax | 1 | {bio,cloud} |
sambamba | 1 | {bio} |
- samblaster | 1 | {bio,covid-19} |
samtools-legacy | 1 | {bio-dev} |
segemehl | 1 | {bio} |
sga | 1 | {bio} |
@@ -141,9 +137,13 @@ Last-Update: Fri, 09 Jul 2021 01:42:04 +0000
simpleitk | 1 | {imaging-dev} |
soapaligner | 1 | {bio} |
soapsnp | 1 | {bio} |
+ spaced | 1 | {bio} |
sprai | 1 | {bio} |
suitename | 1 | {bio} |
surankco | 1 | {bio} |
+ tvc | 1 | {bio} |
+ yaha | 1 | {bio} |
+ zalign | 1 | {cloud,bio} |
acedb | 0 | {cloud,bio} |
atropos | 0 | {bio} |
bambamc | 0 | {bio-dev} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/7b5f33df0d94946199d3a3de1d1c2c7b82f055d2
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/7b5f33df0d94946199d3a3de1d1c2c7b82f055d2
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