Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
4f500b4b by Andreas Tille at 2021-07-14T13:42:21+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,147 +1,146 @@
-Last-Update: Wed, 14 Jul 2021 01:42:04 +0000
+Last-Update: Wed, 14 Jul 2021 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 169 | {covid-19,imaging} |
- orthanc | 88 | {imaging,covid-19,practice} |
+ dcmtk | 168 | {covid-19,imaging} |
+ orthanc | 89 | {imaging,covid-19,practice} |
orthanc-wsi | 49 | {imaging,practice,his,covid-19,oncology,laboratory} |
- gdcm | 39 | {imaging-dev} |
+ gdcm | 38 | {imaging-dev} |
+ amide | 29 | {imaging} |
dicomscope | 29 | {imaging} |
- amide | 28 | {imaging} |
dicom3tools | 26 | {imaging} |
- htsjdk | 25 | {bio-dev} |
- dcm2niix | 23 | {imaging} |
+ htsjdk | 26 | {bio-dev} |
+ dcm2niix | 24 | {imaging} |
gdcm | 20 | {covid-19,imaging} |
odin | 17 | {imaging-dev,imaging} |
- ngs-sdk | 14 | {bio-dev} |
+ ngs-sdk | 15 | {bio-dev} |
minc-tools | 13 | {imaging} |
+ orthanc-webviewer | 13 | {imaging} |
+ gnumed-server | 12 | {covid-19,practice} |
insighttoolkit4 | 12 | {imaging-dev} |
- orthanc-webviewer | 12 | {imaging} |
pixelmed | 12 | {imaging} |
dicomnifti | 11 | {imaging} |
- gnumed-server | 11 | {covid-19,practice} |
invesalius | 11 | {imaging} |
+ adun.app | 10 | {bio} |
gdcm | 10 | {imaging-dev} |
- adun.app | 9 | {bio} |
- nifticlib | 9 | {imaging} |
+ nifticlib | 10 | {imaging} |
+ ngs-sdk | 9 | {bio-dev} |
openslide | 9 | {imaging} |
- ngs-sdk | 8 | {bio-dev} |
plastimatch | 8 | {imaging} |
libminc | 7 | {imaging-dev} |
mia | 7 | {imaging} |
dicompyler | 6 | {oncology} |
+ jebl2 | 6 | {bio-dev} |
libdivsufsort | 6 | {bio-dev} |
+ librg-utils-perl | 6 | {bio} |
nifti2dicom | 6 | {imaging} |
nifticlib | 6 | {imaging-dev} |
busco | 5 | {bio,covid-19} |
- jebl2 | 5 | {bio-dev} |
+ ea-utils | 5 | {bio} |
king | 5 | {imaging,typesetting} |
- librg-utils-perl | 5 | {bio} |
+ ngs-sdk | 5 | {bio-dev} |
nifti2dicom | 5 | {imaging} |
openslide | 5 | {imaging-dev} |
orthanc-dicomweb | 5 | {covid-19,imaging} |
+ orthanc-postgresql | 5 | {imaging} |
oscar | 5 | {tools,data,practice} |
+ runcircos-gui | 5 | {bio} |
salmid | 5 | {bio} |
sight | 5 | {imaging} |
treeview | 5 | {bio-phylogeny,bio} |
- ea-utils | 4 | {bio} |
- ngs-sdk | 4 | {bio-dev} |
- orthanc-postgresql | 4 | {imaging} |
- runcircos-gui | 4 | {bio} |
+ biojava-live | 4 | {bio-dev} |
+ blasr | 4 | {bio,bio-ngs} |
+ lagan | 4 | {bio} |
+ melting | 4 | {cloud,bio} |
+ obitools | 4 | {bio} |
+ pbdagcon | 4 | {bio} |
+ tracetuner | 4 | {bio} |
bart-view | 3 | {imaging} |
- biojava-live | 3 | {bio-dev} |
- blasr | 3 | {bio,bio-ngs} |
+ beast-mcmc | 3 | {bio-phylogeny,bio} |
+ biomaj3-cli | 3 | {cloud} |
+ bitseq | 3 | {bio} |
+ brig | 3 | {bio} |
+ canu | 3 | {bio} |
elastix | 3 | {imaging} |
+ embassy-domainatrix | 3 | {cloud,bio} |
+ embassy-domalign | 3 | {cloud,bio} |
+ embassy-domsearch | 3 | {bio,cloud} |
emboss-explorer | 3 | {bio} |
+ fsm-lite | 3 | {bio} |
+ gatb-core | 3 | {bio} |
getdata | 3 | {bio} |
- lagan | 3 | {bio} |
+ ghmm | 3 | {bio} |
+ jellyfish1 | 3 | {bio} |
+ librdp-taxonomy-tree-java | 3 | {bio-dev} |
libsbml | 3 | {bio-dev} |
- melting | 3 | {cloud,bio} |
- obitools | 3 | {bio} |
+ mhap | 3 | {bio,bio-ngs} |
orthanc-mysql | 3 | {imaging} |
- pbdagcon | 3 | {bio} |
+ phast | 3 | {bio} |
+ phyutility | 3 | {bio,cloud} |
+ piler | 3 | {bio} |
+ rdp-classifier | 3 | {bio} |
+ saint | 3 | {bio} |
stacks | 3 | {bio} |
- tracetuner | 3 | {bio} |
- beast-mcmc | 2 | {bio-phylogeny,bio} |
- biomaj3-cli | 2 | {cloud} |
- bitseq | 2 | {bio} |
- brig | 2 | {bio} |
- canu | 2 | {bio} |
- embassy-domainatrix | 2 | {cloud,bio} |
- embassy-domalign | 2 | {cloud,bio} |
- embassy-domsearch | 2 | {bio,cloud} |
- fsm-lite | 2 | {bio} |
- gatb-core | 2 | {bio} |
- ghmm | 2 | {bio} |
- jellyfish1 | 2 | {bio} |
+ staden | 3 | {bio} |
+ anfo | 2 | {bio,cloud} |
+ arden | 2 | {cloud,bio} |
+ assemblytics | 2 | {bio} |
+ bio-tradis | 2 | {bio-dev,bio} |
+ clonalframeml | 2 | {covid-19,bio} |
+ clonalorigin | 2 | {bio} |
+ delly | 2 | {bio,covid-19} |
+ ecopcr | 2 | {bio} |
+ estscan | 2 | {bio} |
+ fastml | 2 | {bio} |
+ hinge | 2 | {bio} |
+ ipig | 2 | {bio} |
+ jmodeltest | 2 | {bio-phylogeny,bio} |
lamarc | 2 | {bio} |
- librdp-taxonomy-tree-java | 2 | {bio-dev} |
- mhap | 2 | {bio,bio-ngs} |
+ libncl | 2 | {bio} |
+ libpal-java | 2 | {bio-dev} |
+ logol | 2 | {bio} |
+ mauve-aligner | 2 | {bio} |
+ metaphlan2 | 2 | {bio} |
nipype | 2 | {imaging-dev,imaging} |
orthanc-gdcm | 2 | {imaging} |
- phast | 2 | {bio} |
- phyutility | 2 | {bio,cloud} |
- piler | 2 | {bio} |
+ perm | 2 | {cloud,bio} |
+ prime-phylo | 2 | {cloud,bio} |
+ pscan-chip | 2 | {bio} |
pymia | 2 | {imaging-dev} |
- rdp-classifier | 2 | {bio} |
- saint | 2 | {bio} |
+ qcumber | 2 | {bio} |
+ quorum | 2 | {bio} |
+ rdp-alignment | 2 | {bio} |
+ rtax | 2 | {cloud,bio} |
samblaster | 2 | {covid-19,bio} |
+ sga | 2 | {bio} |
sibsim4 | 2 | {cloud,bio} |
+ soapaligner | 2 | {bio} |
+ soapsnp | 2 | {bio} |
+ sprai | 2 | {bio} |
spread-phy | 2 | {bio,bio-phylogeny} |
- staden | 2 | {bio} |
- anfo | 1 | {bio,cloud} |
- arden | 1 | {cloud,bio} |
- assemblytics | 1 | {bio} |
- bio-tradis | 1 | {bio-dev,bio} |
+ suitename | 2 | {bio} |
+ surankco | 2 | {bio} |
+ tvc | 2 | {bio} |
+ yaha | 2 | {bio} |
+ zalign | 2 | {cloud,bio} |
blimps | 1 | {bio} |
cat-bat | 1 | {bio,covid-19} |
- clonalframeml | 1 | {covid-19,bio} |
- clonalorigin | 1 | {bio} |
cufflinks | 1 | {cloud,bio} |
- delly | 1 | {bio,covid-19} |
- ecopcr | 1 | {bio} |
- estscan | 1 | {bio} |
- fastml | 1 | {bio} |
gifticlib | 1 | {imaging-dev} |
- hinge | 1 | {bio} |
- ipig | 1 | {bio} |
- jmodeltest | 1 | {bio-phylogeny,bio} |
- libncl | 1 | {bio} |
- libpal-java | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
- logol | 1 | {bio} |
- mauve-aligner | 1 | {bio} |
- metaphlan2 | 1 | {bio} |
microbegps | 1 | {bio} |
orthanc-python | 1 | {covid-19} |
papyrus | 1 | {imaging-dev} |
paraclu | 1 | {cloud,bio} |
- perm | 1 | {cloud,bio} |
placnet | 1 | {bio} |
plasmidseeker | 1 | {bio} |
- prime-phylo | 1 | {cloud,bio} |
proalign | 1 | {bio,bio-phylogeny} |
- pscan-chip | 1 | {bio} |
- qcumber | 1 | {bio} |
- quorum | 1 | {bio} |
rambo-k | 1 | {bio} |
- rdp-alignment | 1 | {bio} |
- rtax | 1 | {cloud,bio} |
salmon | 1 | {bio,covid-19} |
- sambamba | 1 | {bio} |
samtools-legacy | 1 | {bio-dev} |
segemehl | 1 | {bio} |
- sga | 1 | {bio} |
sift | 1 | {bio} |
- soapaligner | 1 | {bio} |
- soapsnp | 1 | {bio} |
spaced | 1 | {bio} |
- sprai | 1 | {bio} |
- suitename | 1 | {bio} |
- surankco | 1 | {bio} |
- tvc | 1 | {bio} |
- yaha | 1 | {bio} |
- zalign | 1 | {cloud,bio} |
acedb | 0 | {bio,cloud} |
atropos | 0 | {bio} |
bambamc | 0 | {bio-dev} |
@@ -214,6 +213,7 @@ Last-Update: Wed, 14 Jul 2021 01:42:04 +0000
python-wdlparse | 0 | {bio-dev} |
q2-sample-classifier | 0 | {bio-dev,bio} |
resfinder-db | 0 | {bio} |
+ sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
shovill | 0 | {bio,covid-19} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/4f500b4bdc4f1847efe289155da0d9026e3e90a9
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/4f500b4bdc4f1847efe289155da0d9026e3e90a9
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