Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
e0e332ac by Andreas Tille at 2021-07-16T13:42:21+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,164 +1,135 @@
-Last-Update: Fri, 16 Jul 2021 01:42:04 +0000
+Last-Update: Fri, 16 Jul 2021 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 167 | {covid-19,imaging} |
- orthanc | 88 | {imaging,covid-19,practice} |
- orthanc-wsi | 48 | {imaging,practice,his,covid-19,oncology,laboratory} |
- gdcm | 39 | {imaging-dev} |
- dicomscope | 29 | {imaging} |
+ dcmtk | 169 | {covid-19,imaging} |
+ orthanc | 89 | {imaging,covid-19,practice} |
+ orthanc-wsi | 49 | {imaging,practice,his,covid-19,oncology,laboratory} |
+ gdcm | 38 | {imaging-dev} |
+ dicomscope | 30 | {imaging} |
dicom3tools | 27 | {imaging} |
amide | 26 | {imaging} |
- dcm2niix | 25 | {imaging} |
- htsjdk | 25 | {bio-dev} |
+ dcm2niix | 24 | {imaging} |
gdcm | 21 | {covid-19,imaging} |
+ htsjdk | 21 | {bio-dev} |
odin | 17 | {imaging-dev,imaging} |
- ngs-sdk | 14 | {bio-dev} |
minc-tools | 13 | {imaging} |
orthanc-webviewer | 13 | {imaging} |
gnumed-server | 12 | {covid-19,practice} |
pixelmed | 12 | {imaging} |
dicomnifti | 11 | {imaging} |
insighttoolkit4 | 11 | {imaging-dev} |
+ ngs-sdk | 11 | {bio-dev} |
gdcm | 10 | {imaging-dev} |
invesalius | 10 | {imaging} |
nifticlib | 10 | {imaging} |
- adun.app | 9 | {bio} |
openslide | 9 | {imaging} |
+ adun.app | 8 | {bio} |
plastimatch | 8 | {imaging} |
libminc | 7 | {imaging-dev} |
mia | 7 | {imaging} |
ngs-sdk | 7 | {bio-dev} |
dicompyler | 6 | {oncology} |
- ea-utils | 6 | {bio} |
libdivsufsort | 6 | {bio-dev} |
nifti2dicom | 6 | {imaging} |
nifticlib | 6 | {imaging-dev} |
- busco | 5 | {bio,covid-19} |
- jebl2 | 5 | {bio-dev} |
- king | 5 | {imaging,typesetting} |
- librg-utils-perl | 5 | {bio} |
+ oscar | 6 | {tools,data,practice} |
+ ea-utils | 5 | {bio} |
nifti2dicom | 5 | {imaging} |
openslide | 5 | {imaging-dev} |
orthanc-postgresql | 5 | {imaging} |
- oscar | 5 | {tools,data,practice} |
- salmid | 5 | {bio} |
sight | 5 | {imaging} |
- treeview | 5 | {bio-phylogeny,bio} |
- ngs-sdk | 4 | {bio-dev} |
+ busco | 4 | {bio,covid-19} |
+ jebl2 | 4 | {bio-dev} |
+ king | 4 | {imaging,typesetting} |
+ librg-utils-perl | 4 | {bio} |
orthanc-dicomweb | 4 | {covid-19,imaging} |
- runcircos-gui | 4 | {bio} |
- stacks | 4 | {bio} |
+ salmid | 4 | {bio} |
+ treeview | 4 | {bio-phylogeny,bio} |
bart-view | 3 | {imaging} |
- biojava-live | 3 | {bio-dev} |
- blasr | 3 | {bio,bio-ngs} |
elastix | 3 | {imaging} |
- emboss-explorer | 3 | {bio} |
getdata | 3 | {bio} |
- lagan | 3 | {bio} |
libsbml | 3 | {bio-dev} |
- melting | 3 | {cloud,bio} |
- obitools | 3 | {bio} |
orthanc-mysql | 3 | {imaging} |
- pbdagcon | 3 | {bio} |
- staden | 3 | {bio} |
- tracetuner | 3 | {bio} |
- beast-mcmc | 2 | {bio-phylogeny,bio} |
- biomaj3-cli | 2 | {cloud} |
- bitseq | 2 | {bio} |
- brig | 2 | {bio} |
- canu | 2 | {bio} |
- embassy-domainatrix | 2 | {cloud,bio} |
- embassy-domalign | 2 | {cloud,bio} |
- embassy-domsearch | 2 | {bio,cloud} |
- gatb-core | 2 | {bio} |
- ghmm | 2 | {bio} |
- jellyfish1 | 2 | {bio} |
- lamarc | 2 | {bio} |
- librdp-taxonomy-tree-java | 2 | {bio-dev} |
- mhap | 2 | {bio,bio-ngs} |
+ runcircos-gui | 3 | {bio} |
+ stacks | 3 | {bio} |
+ biojava-live | 2 | {bio-dev} |
+ blasr | 2 | {bio,bio-ngs} |
+ emboss-explorer | 2 | {bio} |
+ lagan | 2 | {bio} |
+ melting | 2 | {cloud,bio} |
+ ngs-sdk | 2 | {bio-dev} |
nipype | 2 | {imaging-dev,imaging} |
+ obitools | 2 | {bio} |
orthanc-gdcm | 2 | {imaging} |
- phast | 2 | {bio} |
- phyutility | 2 | {bio,cloud} |
- piler | 2 | {bio} |
+ pbdagcon | 2 | {bio} |
pymia | 2 | {imaging-dev} |
- rdp-classifier | 2 | {bio} |
- saint | 2 | {bio} |
- samblaster | 2 | {covid-19,bio} |
- sibsim4 | 2 | {cloud,bio} |
- spread-phy | 2 | {bio,bio-phylogeny} |
- anfo | 1 | {bio,cloud} |
- arden | 1 | {cloud,bio} |
- assemblytics | 1 | {bio} |
- bio-tradis | 1 | {bio-dev,bio} |
+ staden | 2 | {bio} |
+ tracetuner | 2 | {bio} |
+ beast-mcmc | 1 | {bio-phylogeny,bio} |
+ biomaj3-cli | 1 | {cloud} |
+ bitseq | 1 | {bio} |
blimps | 1 | {bio} |
+ brig | 1 | {bio} |
+ canu | 1 | {bio} |
cat-bat | 1 | {bio,covid-19} |
- clonalframeml | 1 | {covid-19,bio} |
- clonalorigin | 1 | {bio} |
cufflinks | 1 | {cloud,bio} |
- delly | 1 | {bio,covid-19} |
- ecopcr | 1 | {bio} |
- estscan | 1 | {bio} |
- fastml | 1 | {bio} |
- fsm-lite | 1 | {bio} |
+ embassy-domainatrix | 1 | {cloud,bio} |
+ embassy-domalign | 1 | {cloud,bio} |
+ embassy-domsearch | 1 | {bio,cloud} |
+ gatb-core | 1 | {bio} |
+ ghmm | 1 | {bio} |
gifticlib | 1 | {imaging-dev} |
- hinge | 1 | {bio} |
- ipig | 1 | {bio} |
- jmodeltest | 1 | {bio-phylogeny,bio} |
- libncl | 1 | {bio} |
- libpal-java | 1 | {bio-dev} |
+ jellyfish1 | 1 | {bio} |
+ lamarc | 1 | {bio} |
+ librdp-taxonomy-tree-java | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
- logol | 1 | {bio} |
- mauve-aligner | 1 | {bio} |
- metaphlan2 | 1 | {bio} |
- microbegps | 1 | {bio} |
+ mhap | 1 | {bio,bio-ngs} |
orthanc-python | 1 | {covid-19} |
papyrus | 1 | {imaging-dev} |
- paraclu | 1 | {cloud,bio} |
- perm | 1 | {cloud,bio} |
- placnet | 1 | {bio} |
- plasmidseeker | 1 | {bio} |
- prime-phylo | 1 | {cloud,bio} |
- proalign | 1 | {bio,bio-phylogeny} |
- pscan-chip | 1 | {bio} |
- qcumber | 1 | {bio} |
- quorum | 1 | {bio} |
- rambo-k | 1 | {bio} |
- rdp-alignment | 1 | {bio} |
- rtax | 1 | {cloud,bio} |
+ phast | 1 | {bio} |
+ phyutility | 1 | {bio,cloud} |
+ piler | 1 | {bio} |
+ rdp-classifier | 1 | {bio} |
+ saint | 1 | {bio} |
salmon | 1 | {bio,covid-19} |
+ samblaster | 1 | {covid-19,bio} |
samtools-legacy | 1 | {bio-dev} |
- segemehl | 1 | {bio} |
- sga | 1 | {bio} |
+ sibsim4 | 1 | {cloud,bio} |
sift | 1 | {bio} |
- soapaligner | 1 | {bio} |
- soapsnp | 1 | {bio} |
- spaced | 1 | {bio} |
- sprai | 1 | {bio} |
- suitename | 1 | {bio} |
- surankco | 1 | {bio} |
- tvc | 1 | {bio} |
- yaha | 1 | {bio} |
- zalign | 1 | {cloud,bio} |
+ spread-phy | 1 | {bio,bio-phylogeny} |
acedb | 0 | {bio,cloud} |
+ anfo | 0 | {bio,cloud} |
+ arden | 0 | {cloud,bio} |
+ assemblytics | 0 | {bio} |
atropos | 0 | {bio} |
bambamc | 0 | {bio-dev} |
bamkit | 0 | {bio,covid-19} |
bbmap | 0 | {bio,covid-19} |
biojava4-live | 0 | {bio-dev} |
biosyntax | 0 | {bio} |
+ bio-tradis | 0 | {bio-dev,bio} |
bmtk | 0 | {psychology} |
bustools | 0 | {bio,covid-19} |
camp | 0 | {imaging-dev} |
+ clonalframeml | 0 | {covid-19,bio} |
+ clonalorigin | 0 | {bio} |
ctn | 0 | {imaging-dev} |
+ delly | 0 | {bio,covid-19} |
dextractor | 0 | {bio,covid-19} |
+ ecopcr | 0 | {bio} |
eegdev | 0 | {imaging-dev} |
emmax | 0 | {bio} |
+ estscan | 0 | {bio} |
+ fastml | 0 | {bio} |
fis-gtm | 0 | {his} |
+ fsm-lite | 0 | {bio} |
gatb-core | 0 | {bio-dev} |
+ hinge | 0 | {bio} |
htscodecs | 0 | {covid-19,bio-dev} |
intake | 0 | {bio-dev,bio} |
+ ipig | 0 | {bio} |
+ jmodeltest | 0 | {bio-phylogeny,bio} |
kmerresistance | 0 | {bio} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
@@ -184,15 +155,21 @@ Last-Update: Fri, 16 Jul 2021 01:42:04 +0000
libmialm | 0 | {imaging-dev} |
libmuscle | 0 | {bio-dev} |
libncl | 0 | {bio-dev} |
+ libncl | 0 | {bio} |
+ libpal-java | 0 | {bio-dev} |
libpsortb | 0 | {bio-dev} |
libqes | 0 | {bio-dev} |
libseqlib | 0 | {bio-dev} |
libstatgen | 0 | {bio-dev} |
libxdf | 0 | {imaging-dev} |
+ logol | 0 | {bio} |
+ mauve-aligner | 0 | {bio} |
+ metaphlan2 | 0 | {bio} |
metastudent-data | 0 | {bio} |
metastudent-data-2 | 0 | {bio} |
mia | 0 | {imaging-dev} |
miaviewit | 0 | {imaging-dev} |
+ microbegps | 0 | {bio} |
milib | 0 | {bio-dev,covid-19} |
nanosv | 0 | {covid-19,bio} |
ncbi-vdb | 0 | {bio-dev} |
@@ -200,39 +177,62 @@ Last-Update: Fri, 16 Jul 2021 01:42:04 +0000
opencfu | 0 | {laboratory} |
opensurgsim | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
+ paraclu | 0 | {cloud,bio} |
parallel-fastq-dump | 0 | {covid-19} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
+ perm | 0 | {cloud,bio} |
pigx-rnaseq | 0 | {covid-19,bio} |
pilercr | 0 | {bio} |
pique | 0 | {bio} |
+ placnet | 0 | {bio} |
plasmidid | 0 | {covid-19,bio} |
+ plasmidseeker | 0 | {bio} |
pplacer | 0 | {bio-phylogeny,covid-19,bio} |
+ prime-phylo | 0 | {cloud,bio} |
+ proalign | 0 | {bio,bio-phylogeny} |
+ pscan-chip | 0 | {bio} |
python-bcbio-gff | 0 | {bio-dev} |
python-seqcluster | 0 | {bio-dev,covid-19} |
python-wdlparse | 0 | {bio-dev} |
q2-sample-classifier | 0 | {bio-dev,bio} |
+ qcumber | 0 | {bio} |
+ quorum | 0 | {bio} |
+ rambo-k | 0 | {bio} |
+ rdp-alignment | 0 | {bio} |
resfinder-db | 0 | {bio} |
+ rtax | 0 | {cloud,bio} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
+ segemehl | 0 | {bio} |
seq-gen | 0 | {bio} |
+ sga | 0 | {bio} |
shovill | 0 | {bio,covid-19} |
simpleitk | 0 | {imaging-dev} |
simrisc | 0 | {oncology} |
skesa | 0 | {bio} |
skewer | 0 | {bio} |
smrtanalysis | 0 | {bio,covid-19} |
+ soapaligner | 0 | {bio} |
+ soapsnp | 0 | {bio} |
+ spaced | 0 | {bio} |
spaln | 0 | {covid-19,bio} |
+ sprai | 0 | {bio} |
srf | 0 | {bio-dev} |
+ suitename | 0 | {bio} |
+ surankco | 0 | {bio} |
svim | 0 | {bio} |
thesias | 0 | {bio,covid-19} |
tophat-recondition | 0 | {bio,covid-19} |
trace2dbest | 0 | {bio} |
+ tvc | 0 | {bio} |
varna | 0 | {bio} |
varscan | 0 | {covid-19,bio} |
vienna-rna | 0 | {covid-19,bio} |
xdffileio | 0 | {imaging-dev} |
+ yaha | 0 | {bio} |
yanagiba | 0 | {bio,covid-19} |
+ zalign | 0 | {cloud,bio} |
mssstest | -1 | {tools} |
python-seqcluster | -1 | {bio} |
sight | -1 | {imaging-dev} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/e0e332acd4b2a58bfc557082ffff143d2fa6a3fc
--
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