Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
75b07264 by Andreas Tille at 2021-07-17T13:42:21+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,17 +1,17 @@
-Last-Update: Sat, 17 Jul 2021 01:42:03 +0000
+Last-Update: Sat, 17 Jul 2021 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 169 | {covid-19,imaging} |
- orthanc | 89 | {imaging,covid-19,practice} |
+ dcmtk | 170 | {covid-19,imaging} |
+ orthanc | 91 | {imaging,covid-19,practice} |
orthanc-wsi | 49 | {imaging,practice,his,covid-19,oncology,laboratory} |
- gdcm | 38 | {imaging-dev} |
+ gdcm | 36 | {imaging-dev} |
dicomscope | 30 | {imaging} |
dicom3tools | 27 | {imaging} |
amide | 26 | {imaging} |
- dcm2niix | 24 | {imaging} |
+ dcm2niix | 23 | {imaging} |
+ htsjdk | 23 | {bio-dev} |
gdcm | 21 | {covid-19,imaging} |
- htsjdk | 21 | {bio-dev} |
odin | 17 | {imaging-dev,imaging} |
minc-tools | 13 | {imaging} |
orthanc-webviewer | 13 | {imaging} |
@@ -23,18 +23,19 @@ Last-Update: Sat, 17 Jul 2021 01:42:03 +0000
gdcm | 10 | {imaging-dev} |
invesalius | 10 | {imaging} |
nifticlib | 10 | {imaging} |
+ adun.app | 9 | {bio} |
openslide | 9 | {imaging} |
- adun.app | 8 | {bio} |
+ ngs-sdk | 8 | {bio-dev} |
plastimatch | 8 | {imaging} |
libminc | 7 | {imaging-dev} |
mia | 7 | {imaging} |
- ngs-sdk | 7 | {bio-dev} |
dicompyler | 6 | {oncology} |
libdivsufsort | 6 | {bio-dev} |
nifti2dicom | 6 | {imaging} |
nifticlib | 6 | {imaging-dev} |
oscar | 6 | {tools,data,practice} |
ea-utils | 5 | {bio} |
+ librg-utils-perl | 5 | {bio} |
nifti2dicom | 5 | {imaging} |
openslide | 5 | {imaging-dev} |
orthanc-postgresql | 5 | {imaging} |
@@ -42,31 +43,37 @@ Last-Update: Sat, 17 Jul 2021 01:42:03 +0000
busco | 4 | {bio,covid-19} |
jebl2 | 4 | {bio-dev} |
king | 4 | {imaging,typesetting} |
- librg-utils-perl | 4 | {bio} |
orthanc-dicomweb | 4 | {covid-19,imaging} |
salmid | 4 | {bio} |
treeview | 4 | {bio-phylogeny,bio} |
bart-view | 3 | {imaging} |
- elastix | 3 | {imaging} |
+ biojava-live | 3 | {bio-dev} |
+ blasr | 3 | {bio,bio-ngs} |
+ emboss-explorer | 3 | {bio} |
getdata | 3 | {bio} |
libsbml | 3 | {bio-dev} |
+ melting | 3 | {cloud,bio} |
orthanc-mysql | 3 | {imaging} |
+ pbdagcon | 3 | {bio} |
+ pymia | 3 | {imaging-dev} |
runcircos-gui | 3 | {bio} |
stacks | 3 | {bio} |
- biojava-live | 2 | {bio-dev} |
- blasr | 2 | {bio,bio-ngs} |
- emboss-explorer | 2 | {bio} |
+ beast-mcmc | 2 | {bio-phylogeny,bio} |
+ elastix | 2 | {imaging} |
+ embassy-domainatrix | 2 | {cloud,bio} |
+ embassy-domalign | 2 | {cloud,bio} |
+ embassy-domsearch | 2 | {bio,cloud} |
lagan | 2 | {bio} |
- melting | 2 | {cloud,bio} |
ngs-sdk | 2 | {bio-dev} |
nipype | 2 | {imaging-dev,imaging} |
obitools | 2 | {bio} |
orthanc-gdcm | 2 | {imaging} |
- pbdagcon | 2 | {bio} |
- pymia | 2 | {imaging-dev} |
+ phyutility | 2 | {bio,cloud} |
+ piler | 2 | {bio} |
+ saint | 2 | {bio} |
staden | 2 | {bio} |
tracetuner | 2 | {bio} |
- beast-mcmc | 1 | {bio-phylogeny,bio} |
+ anfo | 1 | {bio,cloud} |
biomaj3-cli | 1 | {cloud} |
bitseq | 1 | {bio} |
blimps | 1 | {bio} |
@@ -74,32 +81,43 @@ Last-Update: Sat, 17 Jul 2021 01:42:03 +0000
canu | 1 | {bio} |
cat-bat | 1 | {bio,covid-19} |
cufflinks | 1 | {cloud,bio} |
- embassy-domainatrix | 1 | {cloud,bio} |
- embassy-domalign | 1 | {cloud,bio} |
- embassy-domsearch | 1 | {bio,cloud} |
+ ecopcr | 1 | {bio} |
+ fsm-lite | 1 | {bio} |
gatb-core | 1 | {bio} |
ghmm | 1 | {bio} |
gifticlib | 1 | {imaging-dev} |
+ ipig | 1 | {bio} |
jellyfish1 | 1 | {bio} |
+ jmodeltest | 1 | {bio-phylogeny,bio} |
lamarc | 1 | {bio} |
+ libncl | 1 | {bio} |
+ libpal-java | 1 | {bio-dev} |
librdp-taxonomy-tree-java | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
+ mauve-aligner | 1 | {bio} |
+ metaphlan2 | 1 | {bio} |
mhap | 1 | {bio,bio-ngs} |
+ microbegps | 1 | {bio} |
orthanc-python | 1 | {covid-19} |
papyrus | 1 | {imaging-dev} |
+ paraclu | 1 | {cloud,bio} |
+ perm | 1 | {cloud,bio} |
phast | 1 | {bio} |
- phyutility | 1 | {bio,cloud} |
- piler | 1 | {bio} |
+ prime-phylo | 1 | {cloud,bio} |
+ proalign | 1 | {bio,bio-phylogeny} |
rdp-classifier | 1 | {bio} |
- saint | 1 | {bio} |
+ rtax | 1 | {cloud,bio} |
salmon | 1 | {bio,covid-19} |
samblaster | 1 | {covid-19,bio} |
samtools-legacy | 1 | {bio-dev} |
+ sga | 1 | {bio} |
sibsim4 | 1 | {cloud,bio} |
sift | 1 | {bio} |
+ spaced | 1 | {bio} |
+ sprai | 1 | {bio} |
spread-phy | 1 | {bio,bio-phylogeny} |
+ zalign | 1 | {cloud,bio} |
acedb | 0 | {bio,cloud} |
- anfo | 0 | {bio,cloud} |
arden | 0 | {cloud,bio} |
assemblytics | 0 | {bio} |
atropos | 0 | {bio} |
@@ -117,19 +135,15 @@ Last-Update: Sat, 17 Jul 2021 01:42:03 +0000
ctn | 0 | {imaging-dev} |
delly | 0 | {bio,covid-19} |
dextractor | 0 | {bio,covid-19} |
- ecopcr | 0 | {bio} |
eegdev | 0 | {imaging-dev} |
emmax | 0 | {bio} |
estscan | 0 | {bio} |
fastml | 0 | {bio} |
fis-gtm | 0 | {his} |
- fsm-lite | 0 | {bio} |
gatb-core | 0 | {bio-dev} |
hinge | 0 | {bio} |
htscodecs | 0 | {covid-19,bio-dev} |
intake | 0 | {bio-dev,bio} |
- ipig | 0 | {bio} |
- jmodeltest | 0 | {bio-phylogeny,bio} |
kmerresistance | 0 | {bio} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
@@ -155,21 +169,16 @@ Last-Update: Sat, 17 Jul 2021 01:42:03 +0000
libmialm | 0 | {imaging-dev} |
libmuscle | 0 | {bio-dev} |
libncl | 0 | {bio-dev} |
- libncl | 0 | {bio} |
- libpal-java | 0 | {bio-dev} |
libpsortb | 0 | {bio-dev} |
libqes | 0 | {bio-dev} |
libseqlib | 0 | {bio-dev} |
libstatgen | 0 | {bio-dev} |
libxdf | 0 | {imaging-dev} |
logol | 0 | {bio} |
- mauve-aligner | 0 | {bio} |
- metaphlan2 | 0 | {bio} |
metastudent-data | 0 | {bio} |
metastudent-data-2 | 0 | {bio} |
mia | 0 | {imaging-dev} |
miaviewit | 0 | {imaging-dev} |
- microbegps | 0 | {bio} |
milib | 0 | {bio-dev,covid-19} |
nanosv | 0 | {covid-19,bio} |
ncbi-vdb | 0 | {bio-dev} |
@@ -177,11 +186,9 @@ Last-Update: Sat, 17 Jul 2021 01:42:03 +0000
opencfu | 0 | {laboratory} |
opensurgsim | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
- paraclu | 0 | {cloud,bio} |
parallel-fastq-dump | 0 | {covid-19} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
- perm | 0 | {cloud,bio} |
pigx-rnaseq | 0 | {covid-19,bio} |
pilercr | 0 | {bio} |
pique | 0 | {bio} |
@@ -189,8 +196,6 @@ Last-Update: Sat, 17 Jul 2021 01:42:03 +0000
plasmidid | 0 | {covid-19,bio} |
plasmidseeker | 0 | {bio} |
pplacer | 0 | {bio-phylogeny,covid-19,bio} |
- prime-phylo | 0 | {cloud,bio} |
- proalign | 0 | {bio,bio-phylogeny} |
pscan-chip | 0 | {bio} |
python-bcbio-gff | 0 | {bio-dev} |
python-seqcluster | 0 | {bio-dev,covid-19} |
@@ -201,12 +206,10 @@ Last-Update: Sat, 17 Jul 2021 01:42:03 +0000
rambo-k | 0 | {bio} |
rdp-alignment | 0 | {bio} |
resfinder-db | 0 | {bio} |
- rtax | 0 | {cloud,bio} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
segemehl | 0 | {bio} |
seq-gen | 0 | {bio} |
- sga | 0 | {bio} |
shovill | 0 | {bio,covid-19} |
simpleitk | 0 | {imaging-dev} |
simrisc | 0 | {oncology} |
@@ -215,9 +218,7 @@ Last-Update: Sat, 17 Jul 2021 01:42:03 +0000
smrtanalysis | 0 | {bio,covid-19} |
soapaligner | 0 | {bio} |
soapsnp | 0 | {bio} |
- spaced | 0 | {bio} |
spaln | 0 | {covid-19,bio} |
- sprai | 0 | {bio} |
srf | 0 | {bio-dev} |
suitename | 0 | {bio} |
surankco | 0 | {bio} |
@@ -232,7 +233,6 @@ Last-Update: Sat, 17 Jul 2021 01:42:03 +0000
xdffileio | 0 | {imaging-dev} |
yaha | 0 | {bio} |
yanagiba | 0 | {bio,covid-19} |
- zalign | 0 | {cloud,bio} |
mssstest | -1 | {tools} |
python-seqcluster | -1 | {bio} |
sight | -1 | {imaging-dev} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/75b07264ec5d4161e5962e1b7c70e266ebfc26ab
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/75b07264ec5d4161e5962e1b7c70e266ebfc26ab
You're receiving this email because of your account on salsa.debian.org.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20210717/650c9550/attachment-0001.htm>