[med-svn] [Git][med-team/sambamba][master] 10 commits: d/watch: Fix watch regex
Nilesh Patra (@nilesh)
gitlab at salsa.debian.org
Tue Jul 20 22:15:34 BST 2021
Nilesh Patra pushed to branch master at Debian Med / sambamba
Commits:
bd28d6f4 by Nilesh Patra at 2021-07-20T20:24:16+00:00
d/watch: Fix watch regex
- - - - -
1d98743b by Nilesh Patra at 2021-07-20T20:28:22+00:00
Repack to remove embedded shunit2
- - - - -
83d2a9f4 by Nilesh Patra at 2021-07-20T20:28:32+00:00
New upstream version 0.8.0+dfsg
- - - - -
c320eae6 by Nilesh Patra at 2021-07-20T20:28:34+00:00
Update upstream source from tag 'upstream/0.8.0+dfsg'
Update to upstream version '0.8.0+dfsg'
with Debian dir dbe9fbd687dfa34591161c3dc08da514f58d6869
- - - - -
f63cdd31 by Nilesh Patra at 2021-07-21T02:08:26+05:30
Add autopkgtests
- - - - -
c23cba6a by Nilesh Patra at 2021-07-21T02:10:30+05:30
d/lintian-overrides: Fix override
- - - - -
195b024c by Nilesh Patra at 2021-07-21T02:11:19+05:30
Add d/gbp.conf
- - - - -
1a6dc56f by Nilesh Patra at 2021-07-21T02:13:16+05:30
d/salsa-ci.yml: Do not run build on i386
- - - - -
4fbbb452 by Nilesh Patra at 2021-07-21T02:37:08+05:30
Fix copyright
- - - - -
f2705bd3 by Nilesh Patra at 2021-07-21T02:37:08+05:30
Interim changelog entry
- - - - -
13 changed files:
- − contrib/shunit2-2.0.3/CHANGES-2.0.txt
- − contrib/shunit2-2.0.3/LGPL-2.1
- − contrib/shunit2-2.0.3/README.txt
- − contrib/shunit2-2.0.3/contributors.txt
- − contrib/shunit2-2.0.3/shunit2
- debian/changelog
- debian/copyright
- + debian/gbp.conf
- debian/lintian-overrides
- debian/salsa-ci.yml
- + debian/tests/control
- + debian/tests/run-unit-test
- debian/watch
Changes:
=====================================
contrib/shunit2-2.0.3/CHANGES-2.0.txt deleted
=====================================
@@ -1,68 +0,0 @@
-CHANGES WITH 2.0.4
-
-Unset additional variables that were missed.
-
-Fixed off-by-one in exit value for scripts caught by the trap handler.
-
-The library did not fail gracefully when the 'od' command was not installed.
-
-
-CHANGES WITH 2.0.3
-
-Back ported the Makefile from 2.1.1pre that included changes to the
-docs-docbook-prep target.
-
-Changed the test in assertFalse() so that any non-zero value registers as
-false. (Credits to Bryan Larsen)
-
-Updated the testPartyLikeItIs1999() function in the Quick Start documentation.
-The 'expected' and 'actual' values were swapped. (Credits to Richard Jensen)
-
-It was pointed out that the simple 'failed' message for a failed assert was not
-only insufficient, it was nonstandard (when compared to JUnit) and didn't
-provide the user with an expected vs actual result. The code was revised
-somewhat to bring closer into alignment with JUnit (v4.3.1 specifically) so
-that it feels more "normal". (Credits to Richard Jensen)
-
-As part of the JUnit realignment, it was noticed that fail*() functions in
-JUnit don't actually do any comparisons themselves. They only generate a
-failure message. Updated the code to match.
-
-Added self-testing unit tests. Kinda horkey, but they did find bugs during the
-JUnit realignment.
-
-Fixed the code for returning from asserts as the return was being called before
-the unsetting of variables occurred. (Credits to Mathias Goldau)
-
-The assert(True|False)() functions now accept an integer value for a
-conditional test. A value of '0' is considered 'true', while any non-zero value
-is considered 'false'.
-
-All public functions now fill use default values to work properly with the '-x'
-shell debugging flag.
-
-Fixed the method of percent calculation for the report to get achieve better
-accuracy.
-
-
-CHANGES WITH 2.0.2
-
-Fixed problem with fail(). The failure message was not properly printed.
-
-Reworked the Makefile so that the DocBook XML and XSLT files are properly
-downloaded before parsing can continue.
-
-
-CHANGES WITH 2.0.1
-
-Fixed some really stupid mistakes with the fail* functions. They were doing the
-exact opposite of what they were supposed to be doing.
-
-
-CHANGES WITH 2.0.0
-
-Made the first stand-alone release!
-
-
-$Revision$
-vim:spell
=====================================
contrib/shunit2-2.0.3/LGPL-2.1 deleted
=====================================
@@ -1,504 +0,0 @@
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-Also add information on how to contact you by electronic and paper mail.
-
-You should also get your employer (if you work as a programmer) or your
-school, if any, to sign a "copyright disclaimer" for the library, if
-necessary. Here is a sample; alter the names:
-
- Yoyodyne, Inc., hereby disclaims all copyright interest in the
- library `Frob' (a library for tweaking knobs) written by James Random Hacker.
-
- <signature of Ty Coon>, 1 April 1990
- Ty Coon, President of Vice
-
-That's all there is to it!
-
-
=====================================
contrib/shunit2-2.0.3/README.txt deleted
=====================================
@@ -1,153 +0,0 @@
-#------------------------------------------------------------------------------
-# SourceForge
-#
-
-This project is stored on SourceForge as http://sf.net/projects/shunit2. The
-source code can be accessed using the following information.
-
-* Subversion
-$ svn co https://shunit2.svn.sourceforge.net/svnroot/shunit2/trunk/source shunit2
-
-Subversion may also be browsed via a web browser at
-http://svn.sourceforge.net/shunit2
-
-#------------------------------------------------------------------------------
-# Making a release
-#
-
-For these steps, it is assumed we are working with release 2.0.0.
-
-Steps:
-* write release notes
-* update version
-* finish changelog
-* check all the code in
-* tag the release
-* export the release
-* create tarball
-* md5sum the tarball and sign with gpg
-* update website
-* post to SourceForge and Freshmeat
-
-WRITE RELEASE NOTES
-
-This should be pretty self explainatory. Use one of the release notes from a
-previous release as an example.
-
-To get the versions of the various shells, do the following:
-Cygwin
- bash: $ bash --version
- ksh: actually pdksh
- pdksh: look in the downloaded Cygwin directory
-Linux
- bash: $ bash --version
- dash: look at installed version
- ksh: $ ksh --version
- pdksh: $ strings /bin/pdksh |grep 'PD KSH'
- zsh: $ zsh --version
-Solaris 10
- sh: not possible
- bash: $ bash --version
- ksh: $ strings /usr/bin/ksh |grep 'Version'
-
-UPDATE VERSION
-
-Edit the shunit2 source code, and change the version number in the comment, as
-well as in the __SHUNIT_VERSION variable. Next, edit the
-src/docbook/shunit2.xml file, edit the version in the <title> element, and make
-sure there is a revision section for this release.
-
-FINISH DOCUMENTATION
-
-Make sure that any remaning changes get put into the CHANGES-X.X.txt file.
-
-Finish writing the RELEASE_NOTES-X.X.X.txt. Once it is finished, run it through
-the 'fmt' command to make it pretty.
-
-$ fmt -w 80 RELEASE_NOTES-2.0.0.txt >RELEASE_NOTES-2.0.0.txt.new
-$ mv RELEASE_NOTES-2.0.0.txt.new RELEASE_NOTES-2.0.0.txt
-
-We want to have an up-to-date version of the documentation in the release, so
-we'd better build it.
-
-$ pwd
-.../shunit2/source/2.0
-$ make docs
-...
-$ cp -p build/shunit2.html doc
-$ svn ci -m "" doc/shunit2.html
-
-CHECK IN ALL THE CODE
-
-This step is pretty self-explainatory
-
-TAG THE RELEASE
-
-$ pwd
-.../shunit2/source
-$ ls
-2.0 2.1
-$ svn cp -m "Release 2.0.0" \
-2.0 https://shunit2.svn.sourceforge.net/svnroot/shunit2/tags/source/2.0.0
-
-EXPORT THE RELEASE
-
-$ pwd
-.../shunit2/builds
-$ svn export \
-https://shunit2.svn.sourceforge.net/svnroot/shunit2/tags/source/2.0.0 \
-shunit2-2.0.0
-
-CREATE TARBALL
-
-$ tar cfz ../releases/shunit2-2.0.0.tgz shunit2-2.0.0
-
-MD5SUM THE TARBALL AND SIGN WITH GPG
-
-$ cd ../releases
-$ md5sum shunit2-2.0.0.tgz >shunit2-2.0.0.tgz.md5
-$ gpg --default-key kate.ward at forestent.com --detach-sign shunit2-2.0.0.tgz
-
-UPDATE WEBSITE
-
-Again, pretty self-explainatory. Make sure to copy the MD5 and GPG signature
-files. Once that is done, make sure to tag the website so we can go back in
-time if needed.
-
-$ pwd
-.../shunit2
-$ ls
-source website
-$ svn cp -m "Release 2.0.0" \
-website https://shunit2.svn.sourceforge.net/svnroot/shunit2/tags/website/20060916
-
-Now, update the website. It too is held in Subversion, so ssh into SourceForge
-and use 'svn up' to grab the latest version.
-
-POST TO SOURCEFORGE AND FRESHMEAT
-
-http://sourceforge.net/projects/shunit2/
-http://freshmeat.net/
-
-#------------------------------------------------------------------------------
-# Related documentation
-#
-
-Docbook XML
- docbook-xml-4.4.zip
- http://www.docbook.org/xml/4.4/docbook-xml-4.4.zip
- http://www.oasis-open.org/docbook/xml/4.4/docbook-xml-4.4.zip
- docbook-xml-4.5.zip
- http://www.docbook.org/xml/4.5/docbook-xml-4.5.zip
-
-Docbook XSL
- docbook-xsl-1.71.0.tar.bz2
- http://prdownloads.sourceforge.net/docbook/docbook-xsl-1.71.0.tar.bz2?download
- docbook-xsl-1.71.1.tar.bz2
- http://downloads.sourceforge.net/docbook/docbook-xsl-1.71.1.tar.bz2?use_mirror=puzzle
-
-JUnit
- http://www.junit.org
-
-
-$Revision$
=====================================
contrib/shunit2-2.0.3/contributors.txt deleted
=====================================
@@ -1,10 +0,0 @@
-The original author of shunit2 is Kate Ward. The following people have
-contributed in some way or another to shunit2.
-
-Bryan Larsen
-Kevin Van Horn
-Mathias Goldau
-Richard Jensen
-Rob Holland
-
-$Revision$
=====================================
contrib/shunit2-2.0.3/shunit2 deleted
=====================================
@@ -1,799 +0,0 @@
-# $Id$
-# vim:syntax=sh:sts=2
-# vim:foldmethod=marker:foldmarker=/**,*/
-#
-#/**
-# <?xml version="1.0" encoding="UTF-8"?>
-# <s:shelldoc xmlns:s="http://www.forestent.com/projects/shelldoc/xsl/2005.0">
-# <s:header>
-# shUnit 2.0.4
-# Shell Unit Test Framework
-#
-# http://code.google.com/p/shunit2/
-#
-# written by Kate Ward <kate.ward at forestent.com>
-# released under the LGPL
-#
-# this module implements a xUnit based unit test framework similar to JUnit
-# </s:header>
-#*/
-
-# shell flags for shunit:
-# u - treat unset variables as an error when performing parameter expansion
-__SHUNIT_SHELL_FLAGS='u'
-
-# save the current set of shell flags, and then set some for ourselves
-__shunit_oldShellFlags="$-"
-for _shunit_shellFlag in `echo "${__SHUNIT_SHELL_FLAGS}" |sed 's/\(.\)/\1 /g'`
-do
- set -${_shunit_shellFlag}
-done
-unset _shunit_shellFlag
-
-# constants
-
-__SHUNIT_VERSION='2.0.4pre'
-
-__SHUNIT_TRUE=0
-__SHUNIT_FALSE=1
-__SHUNIT_ERROR=2
-
-__SHUNIT_ASSERT_MSG_PREFIX='ASSERT:'
-
-for _su_const in `set |grep "^__SHUNIT_" |cut -d= -f1`; do
- readonly ${_su_const}
-done
-unset _su_const
-
-# variables
-__shunit_suite=''
-
-__shunit_testsPassed=0
-__shunit_testsFailed=0
-__shunit_testsTotal=0
-
-#-----------------------------------------------------------------------------
-# assert functions
-#
-
-#/**
-# <s:function group="asserts">
-# <entry align="right">
-# <emphasis>void</emphasis>
-# </entry>
-# <entry>
-# <funcsynopsis>
-# <funcprototype>
-# <funcdef><function>assertEquals</function></funcdef>
-# <paramdef>string <parameter>[message]</parameter></paramdef>
-# <paramdef>string <parameter>expected</parameter></paramdef>
-# <paramdef>string <parameter>actual</parameter></paramdef>
-# </funcprototype>
-# </funcsynopsis>
-# <para>Asserts that <emphasis>expected</emphasis> and
-# <emphasis>actual</emphasis> are equal to one another. The message is
-# optional.</para>
-# </entry>
-# </s:function>
-#*/
-assertEquals()
-{
- _su_message=''
- if [ $# -eq 3 ]; then
- _su_message=$1
- shift
- fi
- _su_expected=${1:-}
- _su_actual=${2:-}
-
- shunit_return=${__SHUNIT_TRUE}
- if [ "${_su_expected}" = "${_su_actual}" ]; then
- _shunit_testPassed
- else
- failNotEquals "${_su_message}" "${_su_expected}" "${_su_actual}"
- shunit_return=${__SHUNIT_FALSE}
- fi
-
- unset _su_message _su_expected _su_actual
- return ${shunit_return}
-}
-
-#/**
-# <s:function group="asserts">
-# <entry align="right">
-# <emphasis>void</emphasis>
-# </entry>
-# <entry>
-# <funcsynopsis>
-# <funcprototype>
-# <funcdef><function>assertNull</function></funcdef>
-# <paramdef>string <parameter>[message]</parameter></paramdef>
-# <paramdef>string <parameter>value</parameter></paramdef>
-# </funcprototype>
-# </funcsynopsis>
-# <para>Asserts that <emphasis>value</emphasis> is <literal>null</literal>,
-# or in shell terms a zero-length string. The message is optional.</para>
-# </entry>
-# </s:function>
-#*/
-assertNull()
-{
- if [ $# -eq 2 ]; then
- assertTrue "$1" "[ -z '$2' ]"
- else
- assertTrue "[ -z '${1:-}' ]"
- fi
-}
-
-#/**
-# <s:function group="asserts">
-# <entry align="right">
-# <emphasis>void</emphasis>
-# </entry>
-# <entry>
-# <funcsynopsis>
-# <funcprototype>
-# <funcdef><function>assertNotNull</function></funcdef>
-# <paramdef>string <parameter>[message]</parameter></paramdef>
-# <paramdef>string <parameter>value</parameter></paramdef>
-# </funcprototype>
-# </funcsynopsis>
-# <para>Asserts that <emphasis>value</emphasis> is <emphasis
-# role="strong">not</emphasis> <literal>null</literal>, or in shell terms not
-# a zero-length string. The message is optional.</para>
-# </entry>
-# </s:function>
-#*/
-assertNotNull()
-{
- if [ $# -eq 2 ]; then
- assertTrue "$1" "[ -n '$2' ]"
- else
- assertTrue "[ -n '${1:-}' ]"
- fi
-}
-
-#/**
-# <s:function group="asserts">
-# <entry align="right">
-# <emphasis>void</emphasis>
-# </entry>
-# <entry>
-# <funcsynopsis>
-# <funcprototype>
-# <funcdef><function>assertSame</function></funcdef>
-# <paramdef>string <parameter>[message]</parameter></paramdef>
-# <paramdef>string <parameter>expected</parameter></paramdef>
-# <paramdef>string <parameter>actual</parameter></paramdef>
-# </funcprototype>
-# </funcsynopsis>
-# <para>This function is functionally equivalent to
-# <function>assertEquals</function>.</para>
-# </entry>
-# </s:function>
-#*/
-assertSame()
-{
- assertEquals "${@:-}"
-}
-
-#/**
-# <s:function group="asserts">
-# <entry align="right">
-# <emphasis>void</emphasis>
-# </entry>
-# <entry>
-# <funcsynopsis>
-# <funcprototype>
-# <funcdef><function>assertNotSame</function></funcdef>
-# <paramdef>string <parameter>[message]</parameter></paramdef>
-# <paramdef>string <parameter>unexpected</parameter></paramdef>
-# <paramdef>string <parameter>actual</parameter></paramdef>
-# </funcprototype>
-# </funcsynopsis>
-# <para>Asserts that <emphasis>unexpected</emphasis> and
-# <emphasis>actual</emphasis> are <emphasis role="strong">not</emphasis>
-# equal to one another. The message is optional.</para>
-# </entry>
-# </s:function>
-#*/
-assertNotSame()
-{
- _su_message=''
- if [ $# -eq 3 ]; then
- _su_message=$1
- shift
- fi
- _su_unexpected=${1:-}
- _su_actual=${2:-}
-
- shunit_return=${__SHUNIT_TRUE}
- if [ "${_su_unexpected}" != "${_su_actual}" ]; then
- _shunit_testPassed
- else
- failSame "${_su_message}"
- shunit_return=${__SHUNIT_FALSE}
- fi
-
- unset _su_message _su_unexpected _su_actual
- return ${shunit_return}
-}
-
-#/**
-# <s:function group="asserts">
-# <entry align="right">
-# <emphasis>void</emphasis>
-# </entry>
-# <entry>
-# <funcsynopsis>
-# <funcprototype>
-# <funcdef><function>assertTrue</function></funcdef>
-# <paramdef>string <parameter>[message]</parameter></paramdef>
-# <paramdef>string <parameter>condition</parameter></paramdef>
-# </funcprototype>
-# </funcsynopsis>
-# <para>Asserts that a given shell test condition is true. The message is
-# optional.</para>
-# <para>Testing whether something is true or false is easy enough by using
-# the assertEquals/assertNotSame functions. Shell supports much more
-# complicated tests though, and a means to support them was needed. As such,
-# this function tests that conditions are true or false through evaluation
-# rather than just looking for a true or false.</para>
-# <funcsynopsis>
-# The following test will succeed: <funcsynopsisinfo>assertTrue "[ 34 -gt 23 ]"</funcsynopsisinfo>
-# The following test will fail with a message: <funcsynopsisinfo>assertTrue "test failed" "[ -r '/non/existent/file' ]"</funcsynopsisinfo>
-# </funcsynopsis>
-# </entry>
-# </s:function>
-#*/
-assertTrue()
-{
- _su_message=''
- if [ $# -eq 2 ]; then
- _su_message=$1
- shift
- fi
- _su_condition=${1:-}
-
- shunit_return=${__SHUNIT_TRUE}
-
- # see if condition is an integer, i.e. a return value
- _su_match=`expr "${_su_condition}" : '\([0-9]*\)'`
- if [ -z "${_su_condition}" ]; then
- # null condition
- shunit_return=${__SHUNIT_FALSE}
- elif [ "${_su_condition}" = "${_su_match}" ]; then
- # possible return value. treating 0 as true, and non-zero as false.
- [ ${_su_condition} -ne 0 ] && shunit_return=${__SHUNIT_FALSE}
- else
- # (hopefully) a condition
- ( eval ${_su_condition} ) >/dev/null 2>&1
- [ $? -ne 0 ] && shunit_return=${__SHUNIT_FALSE}
- fi
-
- # record the test
- if [ ${shunit_return} -eq ${__SHUNIT_TRUE} ]; then
- _shunit_testPassed
- else
- _shunit_testFailed "${_su_message}"
- fi
-
- unset _su_message _su_condition _su_match
- return ${shunit_return}
-}
-
-#/**
-# <s:function group="asserts">
-# <entry align="right">
-# <emphasis>void</emphasis>
-# </entry>
-# <entry>
-# <funcsynopsis>
-# <funcprototype>
-# <funcdef><function>assertFalse</function></funcdef>
-# <paramdef>string <parameter>[message]</parameter></paramdef>
-# <paramdef>string <parameter>condition</parameter></paramdef>
-# </funcprototype>
-# </funcsynopsis>
-# <para>Asserts that a given shell test condition is false. The message is
-# optional.</para>
-# <para>Testing whether something is true or false is easy enough by using
-# the assertEquals/assertNotSame functions. Shell supports much more
-# complicated tests though, and a means to support them was needed. As such,
-# this function tests that conditions are true or false through evaluation
-# rather than just looking for a true or false.</para>
-# <funcsynopsis>
-# The following test will succeed: <funcsynopsisinfo>assertFalse "[ 'apples' = 'oranges' ]"</funcsynopsisinfo>
-# The following test will fail with a message: <funcsynopsisinfo>assertFalse "test failed" "[ 1 -eq 1 -a 2 -eq 2 ]"</funcsynopsisinfo>
-# </funcsynopsis>
-# </entry>
-# </s:function>
-#*/
-assertFalse()
-{
- _su_message=''
- if [ $# -eq 2 ]; then
- _su_message=$1
- shift
- fi
- _su_condition=${1:-}
-
- shunit_return=${__SHUNIT_TRUE}
-
- # see if condition is an integer, i.e. a return value
- _su_match=`expr "${_su_condition}" : '\([0-9]*\)'`
- if [ -z "${_su_condition}" ]; then
- # null condition
- shunit_return=${__SHUNIT_FALSE}
- elif [ "${_su_condition}" = "${_su_match}" ]; then
- # possible return value. treating 0 as true, and non-zero as false.
- [ ${_su_condition} -eq 0 ] && shunit_return=${__SHUNIT_FALSE}
- else
- # (hopefully) a condition
- ( eval ${_su_condition} ) >/dev/null 2>&1
- [ $? -eq 0 ] && shunit_return=${__SHUNIT_FALSE}
- fi
-
- # record the test
- if [ ${shunit_return} -eq ${__SHUNIT_TRUE} ]; then
- _shunit_testPassed
- else
- _shunit_testFailed "${_su_message}"
- fi
-
- unset _su_message _su_condition _su_match
- return ${shunit_return}
-}
-
-#-----------------------------------------------------------------------------
-# failure functions
-#
-
-#/**
-# <s:function group="failures">
-# <entry align="right">
-# <emphasis>void</emphasis>
-# </entry>
-# <entry>
-# <funcsynopsis>
-# <funcprototype>
-# <funcdef><function>fail</function></funcdef>
-# <paramdef>string <parameter>[message]</parameter></paramdef>
-# </funcprototype>
-# </funcsynopsis>
-# <para>Fails the test immediately, with the optional message.</para>
-# </entry>
-# </s:function>
-#*/
-fail()
-{
- _su_message=${1:-}
-
- _shunit_testFailed "${_su_message}"
-
- unset _su_message
-}
-
-#/**
-# <s:function group="failures">
-# <entry align="right">
-# <emphasis>void</emphasis>
-# </entry>
-# <entry>
-# <funcsynopsis>
-# <funcprototype>
-# <funcdef><function>failNotEquals</function></funcdef>
-# <paramdef>string <parameter>[message]</parameter></paramdef>
-# <paramdef>string <parameter>unexpected</parameter></paramdef>
-# <paramdef>string <parameter>actual</parameter></paramdef>
-# </funcprototype>
-# </funcsynopsis>
-# <para>Fails the test if <emphasis>unexpected</emphasis> and
-# <emphasis>actual</emphasis> are <emphasis role="strong">not</emphasis>
-# equal to one another. The message is optional.</para>
-# </entry>
-# </s:function>
-#*/
-failNotEquals()
-{
- _su_message=''
- if [ $# -eq 3 ]; then
- _su_message=$1
- shift
- fi
- _su_unexpected=${1:-}
- _su_actual=${2:-}
-
- _shunit_testFailed "${_su_message:+${_su_message} }expected:<${_su_unexpected}> but was:<${_su_actual}>"
-
- unset _su_message _su_unexpected _su_actual
-}
-
-#/**
-# <s:function group="failures">
-# <entry align="right">
-# <emphasis>void</emphasis>
-# </entry>
-# <entry>
-# <funcsynopsis>
-# <funcprototype>
-# <funcdef><function>failSame</function></funcdef>
-# <paramdef>string <parameter>[message]</parameter></paramdef>
-# </funcprototype>
-# </funcsynopsis>
-# <para>Indicate test failure because arguments were not the same. The
-# message is optional.</para>
-# </entry>
-# </s:function>
-#*/
-failSame()
-{
- _su_message=${1:-}
-
- _shunit_testFailed "${_su_message:+${_su_message} }expected not same"
-
- unset _su_message
-}
-
-#/**
-# <s:function group="failures">
-# <entry align="right">
-# <emphasis>void</emphasis>
-# </entry>
-# <entry>
-# <funcsynopsis>
-# <funcprototype>
-# <funcdef><function>failNotSame</function></funcdef>
-# <paramdef>string <parameter>[message]</parameter></paramdef>
-# <paramdef>string <parameter>expected</parameter></paramdef>
-# <paramdef>string <parameter>actual</parameter></paramdef>
-# </funcprototype>
-# </funcsynopsis>
-# <para>Fails the test if <emphasis>expected</emphasis> and
-# <emphasis>actual</emphasis> are equal to one another. The message is
-# optional.</para>
-# </entry>
-# </s:function>
-#*/
-failNotSame()
-{
- failNotEquals "${@:-}"
-}
-
-#-----------------------------------------------------------------------------
-# suite functions
-#
-
-#/**
-# <s:function group="suites">
-# <entry align="right">
-# <emphasis>void</emphasis>
-# </entry>
-# <entry>
-# <funcsynopsis>
-# <funcprototype>
-# <funcdef><function>suite</function></funcdef>
-# <paramdef />
-# </funcprototype>
-# </funcsynopsis>
-# <para>This function can be optionally overridden by the user in their test
-# suite.</para>
-# <para>If this function exists, it will be called when
-# <command>shunit2</command> is sourced. If it does not exist, shUnit2 will
-# search the parent script for all functions beginning with the word
-# <literal>test</literal>, and they will be added dynamically to the test
-# suite.</para>
-# </entry>
-# </s:function>
-#*/
-# Note: see _shunit_mktempFunc() for actual implementation
-# suite() { :; }
-
-#/**
-# <s:function group="suites">
-# <entry align="right">
-# <emphasis>void</emphasis>
-# </entry>
-# <entry>
-# <funcsynopsis>
-# <funcprototype>
-# <funcdef><function>suite_addTest</function></funcdef>
-# <paramdef>string <parameter>function</parameter></paramdef>
-# </funcprototype>
-# </funcsynopsis>
-# <para>This function adds a function name to the list of tests scheduled for
-# execution as part of this test suite. This function should only be called
-# from within the <function>suite()</function> function.</para>
-# </entry>
-# </s:function>
-#*/
-suite_addTest()
-{
- _su_func=${1:-}
-
- __shunit_suite="${__shunit_suite:+${__shunit_suite} }${_su_func}"
-
- unset _su_func
-}
-
-#/**
-# <s:function group="suites">
-# <entry align="right">
-# <emphasis>void</emphasis>
-# </entry>
-# <entry>
-# <funcsynopsis>
-# <funcprototype>
-# <funcdef><function>oneTimeSetUp</function></funcdef>
-# <paramdef />
-# </funcprototype>
-# </funcsynopsis>
-# <para>This function can be be optionally overridden by the user in their
-# test suite.</para>
-# <para>If this function exists, it will be called once before any tests are
-# run. It is useful to prepare a common environment for all tests.</para>
-# </entry>
-# </s:function>
-#*/
-# Note: see _shunit_mktempFunc() for actual implementation
-# oneTimeSetUp() { :; }
-
-#/**
-# <s:function group="suites">
-# <entry align="right">
-# <emphasis>void</emphasis>
-# </entry>
-# <entry>
-# <funcsynopsis>
-# <funcprototype>
-# <funcdef><function>oneTimeTearDown</function></funcdef>
-# <paramdef />
-# </funcprototype>
-# </funcsynopsis>
-# <para>This function can be be optionally overridden by the user in their
-# test suite.</para>
-# <para>If this function exists, it will be called once after all tests are
-# completed. It is useful to clean up the environment after all tests.</para>
-# </entry>
-# </s:function>
-#*/
-# Note: see _shunit_mktempFunc() for actual implementation
-# oneTimeTearDown() { :; }
-
-#/**
-# <s:function group="suites">
-# <entry align="right">
-# <emphasis>void</emphasis>
-# </entry>
-# <entry>
-# <funcsynopsis>
-# <funcprototype>
-# <funcdef><function>setUp</function></funcdef>
-# <paramdef />
-# </funcprototype>
-# </funcsynopsis>
-# <para>This function can be be optionally overridden by the user in their
-# test suite.</para>
-# <para>If this function exists, it will be called before each test is run.
-# It is useful to reset the environment before each test.</para>
-# </entry>
-# </s:function>
-#*/
-# Note: see _shunit_mktempFunc() for actual implementation
-# setUp() { :; }
-
-#/**
-# <s:function group="suites">
-# <entry align="right">
-# <emphasis>void</emphasis>
-# </entry>
-# <entry>
-# <funcsynopsis>
-# <funcprototype>
-# <funcdef><function>tearDown</function></funcdef>
-# <paramdef />
-# </funcprototype>
-# </funcsynopsis>
-# <para>This function can be be optionally overridden by the user in their
-# test suite.</para>
-# <para>If this function exists, it will be called after each test completes.
-# It is useful to clean up the environment after each test.</para>
-# </entry>
-# </s:function>
-#*/
-# Note: see _shunit_mktempFunc() for actual implementation
-# tearDown() { :; }
-
-#------------------------------------------------------------------------------
-# internal shUnit2 functions
-#
-
-_shunit_cleanup()
-{
- name=$1
-
- case ${name} in
- EXIT) signal=0 ;;
- INT) signal=2 ;;
- TERM) signal=15 ;;
- esac
-
- # do our work
- rm -fr "${__shunit_tmpDir}"
-
- # exit for all non-EXIT signals
- if [ ${name} != 'EXIT' ]; then
- echo "trapped and now handling the ${name} signal" >&2
- _shunit_generateReport
- # disable EXIT trap
- trap 0
- # add 128 to signal and exit
- exit `expr ${signal} + 128`
- fi
-}
-
-_shunit_execSuite()
-{
- echo '#'
- echo '# Performing tests'
- echo '#'
- for _su_func in ${__shunit_suite}; do
- # execute the per-test setup function
- setUp
-
- # execute the test
- echo "${_su_func}"
- eval ${_su_func}
-
- # execute the per-test tear-down function
- tearDown
- done
-
- unset _su_func
-}
-
-_shunit_functionExists()
-{
- _su__func=$1
- type ${_su__func} 2>/dev/null |grep "is a function$" >/dev/null
- _su__return=$?
- unset _su__func
- return ${_su__return}
-}
-
-_shunit_generateReport()
-{
- _su__awkPercent='{printf("%0.0f%%", $1*100/$2)}'
- if [ ${__shunit_testsTotal} -gt 0 ]; then
- _su__success=`echo ${__shunit_testsPassed} ${__shunit_testsTotal} |\
- awk "${_su__awkPercent}"`
- else
- _su__success=0
- fi
-
- cat <<EOF
-
-#
-# Test report
-#
-tests passed: ${__shunit_testsPassed}
-tests failed: ${__shunit_testsFailed}
-tests total: ${__shunit_testsTotal}
-success rate: ${_su__success}
-EOF
-
- unset _su__success
-}
-
-# this function is a cross-platform temporary directory creation tool. not all
-# OSes have the mktemp function, so one is included here.
-_shunit_mktempDir()
-{
- # try the standard mktemp function
- ( exec mktemp -dqt shunit.XXXXXX 2>/dev/null ) && return
-
- # the standard mktemp didn't work. doing our own.
- if [ -r '/dev/urandom' -a -x '/usr/bin/od' ]; then
- _su__random=`/usr/bin/od -vAn -N4 -tx4 </dev/urandom \
- |sed 's/^[^0-9a-f]*//'`
- elif [ -n "${RANDOM:-}" ]; then
- # $RANDOM works
- _su__random=${RANDOM}${RANDOM}${RANDOM}$$
- else
- # $RANDOM doesn't work
- _su__date=`date '+%Y%m%d%H%M%S'`
- _su__random=`expr ${_su__date} / $$`
- fi
-
- _su__tmpDir="${TMPDIR-/tmp}/shunit.${_su__random}"
- ( umask 077 && mkdir "${_su__tmpDir}" ) || {
- echo 'shUnit:FATAL could not create temporary directory! exiting' >&2
- return ${__SHUNIT_ERROR}
- }
-
- echo ${_su__tmpDir}
- unset _su__date _su__random _su__tmpDir
-}
-
-# this function is here to work around issues in Cygwin
-_shunit_mktempFunc()
-{
- for _su__func in oneTimeSetUp oneTimeTearDown setUp tearDown suite; do
- _su__file="${__shunit_tmpDir}/${_su__func}"
- cat <<EOF >"${_su__file}"
-#! /bin/sh
-exit 0
-EOF
- chmod +x "${_su__file}"
- done
-
- unset _su__file
-}
-
-_shunit_testPassed()
-{
- __shunit_testsPassed=`expr ${__shunit_testsPassed} + 1`
- __shunit_testsTotal=`expr ${__shunit_testsTotal} + 1`
-}
-
-_shunit_testFailed()
-{
- _su__msg=$1
-
- __shunit_testsFailed=`expr ${__shunit_testsFailed} + 1`
- __shunit_testsTotal=`expr ${__shunit_testsTotal} + 1`
- echo "${__SHUNIT_ASSERT_MSG_PREFIX}${_su__msg}" >&2
-
- unset _su__msg
-}
-
-#------------------------------------------------------------------------------
-# main
-#
-
-# create a temporary storage location
-__shunit_tmpDir=`_shunit_mktempDir` || exit ${__SHUNIT_ERROR}
-
-# setup traps to clean up after ourselves
-trap '_shunit_cleanup EXIT' 0
-trap '_shunit_cleanup INT' 2
-trap '_shunit_cleanup TERM' 15
-
-# create phantom functions to work around issues with Cygwin
-_shunit_mktempFunc
-PATH="${__shunit_tmpDir}:${PATH}"
-
-# execute the oneTimeSetUp function (if it exists)
-#_shunit_functionExists oneTimeSetUp && oneTimeSetUp
-oneTimeSetUp
-
-# deprecated: execute the suite function defined in the parent test script
-suite
-
-# if no suite function was defined, dynamically build a list of functions
-if [ -z "${__shunit_suite}" ]; then
- funcs=`grep "^[ \t]*test[A-Za-z0-9_]* *()" $0 |sed 's/[^A-Za-z0-9_]//g'`
- for func in ${funcs}; do
- suite_addTest ${func}
- done
-fi
-
-# execute the tests
-_shunit_execSuite
-
-# execute the oneTimeTearDown function (if it exists)
-oneTimeTearDown
-
-# generate report
-_shunit_generateReport
-
-# restore the previous set of shell flags
-for _shunit_shellFlag in ${__SHUNIT_SHELL_FLAGS}; do
- echo ${__shunit_oldShellFlags} |grep ${_shunit_shellFlag} >/dev/null \
- || set +${_shunit_shellFlag}
-done
-unset _shunit_shellFlag
-
-#/**
-# </s:shelldoc>
-#*/
=====================================
debian/changelog
=====================================
@@ -1,3 +1,20 @@
+sambamba (0.8.0+dfsg-1) UNRELEASED; urgency=medium
+
+ * Team Upload.
+ [ Steffen Möller ]
+ * Update metadata - added ref to guix, fixed indent
+
+ [ Nilesh Patra ]
+ * Add autopkgtests
+ * d/watch: Fix watch regex
+ * Repack to remove embedded shunit2
+ * d/lintian-overrides: Fix override
+ * Add d/gbp.conf
+ * d/salsa-ci.yml: Do not run build on i386
+ * d/copyright: Fix all copyrights
+
+ -- Nilesh Patra <nilesh at debian.org> Wed, 21 Jul 2021 02:11:41 +0530
+
sambamba (0.8.0-1) unstable; urgency=medium
* New upstream version
=====================================
debian/copyright
=====================================
@@ -1,12 +1,35 @@
Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Contact: Pjotr Prins <pjotr2018 at thebird.nl>
Source: https://github.com/lomereiter/sambamba/
+Files-Excluded: contrib/shunit2*
+Comment: Remove embedded contrib/shunit2*
Files: *
Copyright: 2015-2017 Artem Tarasov, Albert J. Vilella, Edwin Cuppen,
Isaac J. Nijman, Pjotr Prins
License: GPL-2+
+Files: BioD/*
+Copyright: Artem Tarasov, George Githinji, Emilio Palumbo,
+ Prasun Anand, Pjotr Prins
+License: Expat
+Comment: Sourced from https://github.com/biod/BioD
+
+Files: BioD/contrib/undead/*
+Copyright: 2007-2009 Ben Hinkle
+ 2000-2013 Digital Mars
+License: Boost-1.0
+Comment: Sourced from https://github.com/dlang/undeaD
+
+Files: BioD/bio/std/hts/thirdparty/*
+Copyright: Masahiro Nakagawa
+License: Boost-1.0
+
+Files: thirdparty/*
+Copyright: Xinok
+License: PD
+Comment: Sourced from https://github.com/Xinok/XSort
+
Files: debian/*
Copyright: 2017 Andreas Tille <tille at debian.org>
License: GPL-2+
@@ -14,3 +37,77 @@ License: GPL-2+
License: GPL-2+
On Debian systems you can find the full text of the GNU General Public
License version 2 or later at /usr/share/common-licenses/GPL-2.
+
+License: Boost-1.0
+ Permission is hereby granted, free of charge, to any person or organization
+ obtaining a copy of the software and accompanying documentation covered by
+ this license (the "Software") to use, reproduce, display, distribute,
+ execute, and transmit the Software, and to prepare derivative works of the
+ Software, and to permit third-parties to whom the Software is furnished to
+ do so, all subject to the following:
+ .
+ The copyright notices in the Software and this entire statement, including
+ the above license grant, this restriction and the following disclaimer,
+ must be included in all copies of the Software, in whole or in part, and
+ all derivative works of the Software, unless such copies or derivative
+ works are solely in the form of machine-executable object code generated by
+ a source language processor.
+ .
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+ FITNESS FOR A PARTICULAR PURPOSE, TITLE AND NON-INFRINGEMENT. IN NO EVENT
+ SHALL THE COPYRIGHT HOLDERS OR ANYONE DISTRIBUTING THE SOFTWARE BE LIABLE
+ FOR ANY DAMAGES OR OTHER LIABILITY, WHETHER IN CONTRACT, TORT OR OTHERWISE,
+ ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
+ DEALINGS IN THE SOFTWARE.
+
+License: Expat
+ Permission is hereby granted, free of charge, to any
+ person obtaining a copy of this software and associated
+ documentation files (the "Software"), to deal in the
+ Software without restriction, including without
+ limitation the rights to use, copy, modify, merge,
+ publish, distribute, sublicense, and/or sell copies of
+ the Software, and to permit persons to whom the Software
+ is furnished to do so, subject to the following
+ conditions:
+ .
+ The above copyright notice and this permission notice
+ shall be included in all copies or substantial portions
+ of the Software.
+ .
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF
+ ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED
+ TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A
+ PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT
+ SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY
+ CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION
+ OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR
+ IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
+ DEALINGS IN THE SOFTWARE.
+
+License: PD
+ This is free and unencumbered software released into the public domain.
+ .
+ Anyone is free to copy, modify, publish, use, compile, sell, or
+ distribute this software, either in source code form or as a compiled
+ binary, for any purpose, commercial or non-commercial, and by any
+ means.
+ .
+ In jurisdictions that recognize copyright laws, the author or authors
+ of this software dedicate any and all copyright interest in the
+ software to the public domain. We make this dedication for the benefit
+ of the public at large and to the detriment of our heirs and
+ successors. We intend this dedication to be an overt act of
+ relinquishment in perpetuity of all present and future rights to this
+ software under copyright law.
+ .
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
+ EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
+ MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
+ IN NO EVENT SHALL THE AUTHORS BE LIABLE FOR ANY CLAIM, DAMAGES OR
+ OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE,
+ ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
+ OTHER DEALINGS IN THE SOFTWARE.
+ .
+ For more information, please refer to <http://unlicense.org/>
=====================================
debian/gbp.conf
=====================================
@@ -0,0 +1,4 @@
+[DEFAULT]
+pristine-tar = True
+filter = [ '.gitignore', '.travis.yml', '.git*' ]
+
=====================================
debian/lintian-overrides
=====================================
@@ -1,2 +1,2 @@
# This is probably due to the linking of htslib
-sambamba: embedded-library usr/bin/sambamba: bzip2
+sambamba: embedded-library usr/bin/sambamba: zlib
=====================================
debian/salsa-ci.yml
=====================================
@@ -2,3 +2,7 @@
include:
- https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml
- https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml
+
+# i386 CI disabled due to unavailable python3-skbio for i386 architecture
+variables:
+ SALSA_CI_DISABLE_BUILD_PACKAGE_I386: "true"
=====================================
debian/tests/control
=====================================
@@ -0,0 +1,3 @@
+Tests: run-unit-test
+Depends: @, shunit2
+Restrictions: allow-stderr
=====================================
debian/tests/run-unit-test
=====================================
@@ -0,0 +1,22 @@
+#!/bin/bash
+set -e
+
+CUR_DIR=`pwd`
+if [ "$AUTOPKGTEST_TMP" = "" ] ; then
+ AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
+ trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM
+fi
+
+cp -a ${CUR_DIR}/test/ $AUTOPKGTEST_TMP
+cp -a ${CUR_DIR}/run_tests.sh $AUTOPKGTEST_TMP
+
+cd $AUTOPKGTEST_TMP
+
+# sambamba used a modified copy of shunit2, but in this case we need to substitute this variable
+sed -i 's/\$1/\/usr\/bin\/sambamba/g' test/test_suite.sh
+
+./test/test_suite.sh 2>&1 | tr '\r' '\n' > test.log
+cat test.log
+cat test.log | grep -q 'OK'
+
+echo "PASS"
=====================================
debian/watch
=====================================
@@ -1,4 +1,8 @@
version=4
-opts="uversionmangle=s/-/~/" \
- https://github.com/lomereiter/sambamba/releases .*/archive/v(\d[\d.pre-]+)@ARCHIVE_EXT@
+opts=\
+repacksuffix=+dfsg,\
+repack,compression=xz,\
+uversionmangle=s/-/~/,\
+dversionmangle=s/\+(debian|dfsg|ds|deb)(\.\d+)?$// \
+ https://github.com/lomereiter/sambamba/releases .*/archive/.*/v(\d[\d.pre-]+)@ARCHIVE_EXT@
View it on GitLab: https://salsa.debian.org/med-team/sambamba/-/compare/5b6a940810e4a2417367a72476a4725178fcb53e...f2705bd39024d955c6ed3ab106d6f16a45701e02
--
View it on GitLab: https://salsa.debian.org/med-team/sambamba/-/compare/5b6a940810e4a2417367a72476a4725178fcb53e...f2705bd39024d955c6ed3ab106d6f16a45701e02
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