[med-svn] [Git][med-team/beagle][master] 4 commits: Update d/copyright

[Dylan Aïssi (@daissi)]

Dylan Aïssi pushed to branch master at Debian Med / beagle


Commits:
679a060b by Dylan Aïssi at 2021-07-23T18:25:28+02:00
Update d/copyright

- - - - -
c79fa5b6 by Dylan Aïssi at 2021-07-23T18:26:16+02:00
Fix version

- - - - -
80991c5a by Dylan Aïssi at 2021-07-23T18:28:01+02:00
Remove d/patches/*, not needed anymore

- - - - -
45e1d7dc by Dylan Aïssi at 2021-07-23T18:33:40+02:00
Remove a former directory from the list in d/rules

- - - - -


5 changed files:

- debian/changelog
- debian/copyright
- − debian/patches/01_Update_htsjtk.patch
- − debian/patches/series
- debian/rules


Changes:

=====================================
debian/changelog
=====================================
@@ -1,4 +1,4 @@
-beagle (5.2-210628+dfsg-1) UNRELEASED; urgency=medium
+beagle (5.2-210628-1) UNRELEASED; urgency=medium
 
   * New upstream release.
 


=====================================
debian/copyright
=====================================
@@ -6,15 +6,15 @@ Comment: Remove embedded htsjdk (samtools)
 Files-Excluded: net
 
 Files: *
-Copyright: 2013-2018 Brian L. Browning
+Copyright: 2013-2021 Brian L. Browning
 License: GPL-3+
 
 Files: debian/*
-Copyright: 2016-2017 Dylan Aïssi <bob.dybian at gmail.com>
+Copyright: 2016-2021 Dylan Aïssi <daissi at debian.org>
 License: GPL-3+
 
 Files: debian/upstream.docs/*
-Copyright: 2013-2018 Brian L. Browning
+Copyright: 2013-2021 Brian L. Browning
 License: GPL-3+
 
 License: GPL-3+


=====================================
debian/patches/01_Update_htsjtk.patch deleted
=====================================
@@ -1,16 +0,0 @@
-Author: Dylan Aïssi <daissi at debian.org>
-Description: Update references to htsjdk.
-Last-Update: 2019-09-09
-Forwarded: No
-
---- a/blbutil/InputIt.java
-+++ b/blbutil/InputIt.java
-@@ -28,7 +28,7 @@
- import java.io.InputStreamReader;
- import java.util.NoSuchElementException;
- import java.util.zip.GZIPInputStream;
--import net.sf.samtools.util.BlockCompressedInputStream;
-+import htsjdk.samtools.util.BlockCompressedInputStream;
- 
- /**
-  * <p>Class {@code InputIt} is a buffered iterator whose {@code next()}


=====================================
debian/patches/series deleted
=====================================
@@ -1 +0,0 @@
-01_Update_htsjtk.patch


=====================================
debian/rules
=====================================
@@ -8,7 +8,7 @@ export CLASSPATH=/usr/share/java/htsjdk.jar
 
 override_jh_build:
 	mkdir SRC/
-	cp -t SRC/ -r beagleutil blbutil bref imp ints main math phase vcf
+	cp -t SRC/ -r beagleutil blbutil bref imp ints main phase vcf
 	jh_build --javacopts="-source 1.8" --javadoc-opts="-source 1.8" --main="main.Main" beagle.jar SRC/
 	jh_build --javacopts="-source 1.8" --javadoc-opts="-source 1.8" --main="bref.Bref3" bref3.jar SRC/
 



View it on GitLab: https://salsa.debian.org/med-team/beagle/-/compare/f8ee64f8029180aa2c381b7a7e62caeba86aee94...45e1d7dc34ed6fb09705a0bf3d4ce42ddd770b9b

-- 
View it on GitLab: https://salsa.debian.org/med-team/beagle/-/compare/f8ee64f8029180aa2c381b7a7e62caeba86aee94...45e1d7dc34ed6fb09705a0bf3d4ce42ddd770b9b
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