[med-svn] [Git][med-team/samtools-legacy][master] 2 commits: Re-add non-essential changes

[Nilesh Patra (@nilesh)]

Nilesh Patra pushed to branch master at Debian Med / samtools-legacy


Commits:
66db4bab by Nilesh Patra at 2021-07-25T20:47:02+05:30
Re-add non-essential changes

This reverts commit 3518e10c1642a371ce2afebc7aa847a7ed146b72.

- - - - -
e0cc6be5 by Nilesh Patra at 2021-07-25T20:48:25+05:30
Interim changelog entry

- - - - -


4 changed files:

- debian/changelog
- debian/control
- + debian/patches/hardening.patch
- debian/patches/series


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,10 @@
+samtools-legacy (0.1.19+dfsg-3) UNRELEASED; urgency=medium
+
+  * Re-add non-essential changes
+  * Add patch to add in hardening options
+
+ -- Nilesh Patra <nilesh at debian.org>  Sun, 25 Jul 2021 20:47:46 +0530
+
 samtools-legacy (0.1.19+dfsg-2) unstable; urgency=medium
 
   * Team Upload.


=====================================
debian/control
=====================================
@@ -6,7 +6,7 @@ Priority: optional
 Build-Depends: debhelper-compat (= 13),
                libncurses5-dev,
                zlib1g-dev
-Standards-Version: 4.5.0
+Standards-Version: 4.5.1
 Vcs-Browser: https://salsa.debian.org/med-team/samtools-legacy
 Vcs-Git: https://salsa.debian.org/med-team/samtools-legacy.git
 Homepage: https://www.htslib.org/


=====================================
debian/patches/hardening.patch
=====================================
@@ -0,0 +1,14 @@
+Description: Inject essential hardening options
+Author: Nilesh Patra <nilesh at debian.org>
+Last-Update: 2021-07-24
+--- a/examples/Makefile
++++ b/examples/Makefile
+@@ -34,7 +34,7 @@
+ 		(cd ..; make libbam.a)
+ 
+ calDepth:../libbam.a calDepth.c
+-		gcc -g -Wall -O2 -I.. calDepth.c -o $@ -L.. -lbam -lm -lz -lpthread
++		$(CC) $(CFLAGS) $(CPPFLAGS) -g -Wall -O2 -I.. calDepth.c -o $@ -L.. -lbam -lm -lz -lpthread $(LDFLAGS)
+ 
+ clean:
+ 		rm -fr *.bam *.bai *.glf* *.fai *.pileup* *~ calDepth *.dSYM ex1*.rg ex1.bcf


=====================================
debian/patches/series
=====================================
@@ -1,3 +1,4 @@
 fix_example_makefile.patch
 fix_segfault_with_small_ref.patch
 fix_coverage_cap.patch
+hardening.patch



View it on GitLab: https://salsa.debian.org/med-team/samtools-legacy/-/compare/52f7c6aa0fbfe7dfbb973b80b3ff5ea242f2fb9d...e0cc6be54d4471a8e63fe4d280a31b2a8e16f4e9

-- 
View it on GitLab: https://salsa.debian.org/med-team/samtools-legacy/-/compare/52f7c6aa0fbfe7dfbb973b80b3ff5ea242f2fb9d...e0cc6be54d4471a8e63fe4d280a31b2a8e16f4e9
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