Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
1e11713f by Andreas Tille at 2021-07-26T13:42:20+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,45 +1,45 @@
-Last-Update: Mon, 26 Jul 2021 01:42:04 +0000
+Last-Update: Mon, 26 Jul 2021 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 169 | {covid-19,imaging} |
- orthanc | 94 | {imaging,covid-19,practice} |
- orthanc-wsi | 51 | {imaging,practice,his,covid-19,oncology,laboratory} |
+ dcmtk | 168 | {covid-19,imaging} |
+ orthanc | 96 | {imaging,covid-19,practice} |
+ orthanc-wsi | 52 | {imaging,practice,his,covid-19,oncology,laboratory} |
dicomscope | 32 | {imaging} |
amide | 30 | {imaging} |
- gdcm | 30 | {imaging-dev} |
- gdcm | 27 | {covid-19,imaging} |
- dicom3tools | 26 | {imaging} |
- dcm2niix | 25 | {imaging} |
+ gdcm | 29 | {imaging-dev} |
+ gdcm | 28 | {covid-19,imaging} |
+ dicom3tools | 27 | {imaging} |
+ dcm2niix | 24 | {imaging} |
htsjdk | 24 | {bio-dev} |
odin | 18 | {imaging-dev,imaging} |
+ minc-tools | 15 | {imaging} |
orthanc-webviewer | 15 | {imaging} |
- minc-tools | 14 | {imaging} |
+ gnumed-server | 14 | {covid-19,practice} |
pixelmed | 14 | {imaging} |
- gdcm | 13 | {imaging-dev} |
- gnumed-server | 13 | {covid-19,practice} |
invesalius | 13 | {imaging} |
+ gdcm | 12 | {imaging-dev} |
insighttoolkit4 | 12 | {imaging-dev} |
+ nifticlib | 12 | {imaging} |
dicomnifti | 11 | {imaging} |
- nifticlib | 11 | {imaging} |
- ngs-sdk | 10 | {bio-dev} |
adun.app | 9 | {bio} |
+ mia | 9 | {imaging} |
+ ngs-sdk | 9 | {bio-dev} |
openslide | 9 | {imaging} |
plastimatch | 9 | {imaging} |
libminc | 8 | {imaging-dev} |
- mia | 8 | {imaging} |
king | 7 | {imaging,typesetting} |
+ nifti2dicom | 7 | {imaging} |
nifticlib | 7 | {imaging-dev} |
libdivsufsort | 6 | {bio-dev} |
ngs-sdk | 6 | {bio-dev} |
- nifti2dicom | 6 | {imaging} |
orthanc-dicomweb | 6 | {covid-19,imaging} |
orthanc-postgresql | 6 | {imaging} |
oscar | 6 | {tools,data,practice} |
dicompyler | 5 | {oncology} |
+ ea-utils | 5 | {bio} |
salmid | 5 | {bio} |
bart-view | 4 | {imaging} |
- ea-utils | 4 | {bio} |
jebl2 | 4 | {bio-dev} |
librg-utils-perl | 4 | {bio} |
nifti2dicom | 4 | {imaging} |
@@ -49,64 +49,70 @@ Last-Update: Mon, 26 Jul 2021 01:42:04 +0000
blasr | 3 | {bio,bio-ngs} |
busco | 3 | {bio,covid-19} |
elastix | 3 | {imaging} |
+ embassy-domainatrix | 3 | {cloud,bio} |
libsbml | 3 | {bio-dev} |
melting | 3 | {cloud,bio} |
+ obitools | 3 | {bio} |
openslide | 3 | {imaging-dev} |
pymia | 3 | {imaging-dev} |
salmon | 3 | {bio,covid-19} |
treeview | 3 | {bio-phylogeny,bio} |
beast-mcmc | 2 | {bio-phylogeny,bio} |
+ bitseq | 2 | {bio} |
+ brig | 2 | {bio} |
canu | 2 | {bio} |
- embassy-domainatrix | 2 | {cloud,bio} |
embassy-domalign | 2 | {cloud,bio} |
embassy-domsearch | 2 | {bio,cloud} |
emboss-explorer | 2 | {bio} |
getdata | 2 | {bio} |
+ jellyfish1 | 2 | {bio} |
lagan | 2 | {bio} |
+ libpal-java | 2 | {bio-dev} |
ngs-sdk | 2 | {bio-dev} |
- obitools | 2 | {bio} |
+ nipype | 2 | {imaging-dev,imaging} |
orthanc-gdcm | 2 | {imaging} |
papyrus | 2 | {imaging-dev} |
pbdagcon | 2 | {bio} |
phyutility | 2 | {bio,cloud} |
+ saint | 2 | {bio} |
stacks | 2 | {bio} |
staden | 2 | {bio} |
tracetuner | 2 | {bio} |
anfo | 1 | {bio,cloud} |
+ bamkit | 1 | {bio,covid-19} |
biomaj3-cli | 1 | {cloud} |
- bitseq | 1 | {bio} |
+ bio-tradis | 1 | {bio-dev,bio} |
blimps | 1 | {bio} |
- brig | 1 | {bio} |
cat-bat | 1 | {bio,covid-19} |
+ dextractor | 1 | {bio,covid-19} |
ecopcr | 1 | {bio} |
+ estscan | 1 | {bio} |
fsm-lite | 1 | {bio} |
gatb-core | 1 | {bio} |
gifticlib | 1 | {imaging-dev} |
ipig | 1 | {bio} |
- jellyfish1 | 1 | {bio} |
jmodeltest | 1 | {bio-phylogeny,bio} |
+ lamarc | 1 | {bio} |
libmuscle | 1 | {bio-dev} |
libncl | 1 | {bio} |
- libpal-java | 1 | {bio-dev} |
librdp-taxonomy-tree-java | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
mauve-aligner | 1 | {bio} |
metaphlan2 | 1 | {bio} |
mhap | 1 | {bio,bio-ngs} |
microbegps | 1 | {bio} |
- nipype | 1 | {imaging-dev,imaging} |
+ opencfu | 1 | {laboratory} |
orthanc-python | 1 | {covid-19} |
paraclu | 1 | {cloud,bio} |
perm | 1 | {cloud,bio} |
piler | 1 | {bio} |
prime-phylo | 1 | {cloud,bio} |
proalign | 1 | {bio,bio-phylogeny} |
+ rdp-alignment | 1 | {bio} |
rdp-classifier | 1 | {bio} |
rtax | 1 | {cloud,bio} |
runcircos-gui | 1 | {bio} |
- saint | 1 | {bio} |
samblaster | 1 | {covid-19,bio} |
- samtools-legacy | 1 | {bio-dev} |
sga | 1 | {bio} |
sibsim4 | 1 | {cloud,bio} |
sift | 1 | {bio} |
@@ -119,11 +125,9 @@ Last-Update: Mon, 26 Jul 2021 01:42:04 +0000
assemblytics | 0 | {bio} |
atropos | 0 | {bio} |
bambamc | 0 | {bio-dev} |
- bamkit | 0 | {bio,covid-19} |
bbmap | 0 | {bio,covid-19} |
biojava4-live | 0 | {bio-dev} |
biosyntax | 0 | {bio} |
- bio-tradis | 0 | {bio-dev,bio} |
bmtk | 0 | {psychology} |
bustools | 0 | {bio,covid-19} |
camp | 0 | {imaging-dev} |
@@ -132,10 +136,8 @@ Last-Update: Mon, 26 Jul 2021 01:42:04 +0000
ctn | 0 | {imaging-dev} |
cufflinks | 0 | {cloud,bio} |
delly | 0 | {bio,covid-19} |
- dextractor | 0 | {bio,covid-19} |
eegdev | 0 | {imaging-dev} |
emmax | 0 | {bio} |
- estscan | 0 | {bio} |
fastml | 0 | {bio} |
fis-gtm | 0 | {his} |
gatb-core | 0 | {bio-dev} |
@@ -144,7 +146,6 @@ Last-Update: Mon, 26 Jul 2021 01:42:04 +0000
htscodecs | 0 | {covid-19,bio-dev} |
intake | 0 | {bio-dev,bio} |
kmerresistance | 0 | {bio} |
- lamarc | 0 | {bio} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
libbio-mage-utils-perl | 0 | {bio-dev} |
@@ -182,7 +183,6 @@ Last-Update: Mon, 26 Jul 2021 01:42:04 +0000
nanosv | 0 | {covid-19,bio} |
ncbi-vdb | 0 | {bio-dev} |
nifticlib | 0 | {imaging-dev} |
- opencfu | 0 | {laboratory} |
opensurgsim | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
parallel-fastq-dump | 0 | {covid-19} |
@@ -200,11 +200,9 @@ Last-Update: Mon, 26 Jul 2021 01:42:04 +0000
python-bcbio-gff | 0 | {bio-dev} |
python-seqcluster | 0 | {bio-dev,covid-19} |
python-wdlparse | 0 | {bio-dev} |
- q2-sample-classifier | 0 | {bio-dev,bio} |
qcumber | 0 | {bio} |
quorum | 0 | {bio} |
rambo-k | 0 | {bio} |
- rdp-alignment | 0 | {bio} |
resfinder-db | 0 | {bio} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
@@ -236,5 +234,5 @@ Last-Update: Mon, 26 Jul 2021 01:42:04 +0000
yanagiba | 0 | {bio,covid-19} |
mssstest | -1 | {tools} |
python-seqcluster | -1 | {bio} |
-(267 rows)
+(265 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/1e11713ffe76f16168fec792b9c2982b7b4b6bd7
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/1e11713ffe76f16168fec792b9c2982b7b4b6bd7
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