Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
8ae9ee8b by Andreas Tille at 2021-07-29T13:42:20+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,19 +1,19 @@
-Last-Update: Thu, 29 Jul 2021 01:42:03 +0000
+Last-Update: Thu, 29 Jul 2021 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 166 | {covid-19,imaging} |
- orthanc | 94 | {imaging,covid-19,practice} |
- orthanc-wsi | 50 | {imaging,practice,his,covid-19,oncology,laboratory} |
- dicomscope | 31 | {imaging} |
- gdcm | 29 | {imaging-dev} |
+ dcmtk | 168 | {covid-19,imaging} |
+ orthanc | 97 | {imaging,covid-19,practice} |
+ orthanc-wsi | 51 | {imaging,practice,his,covid-19,oncology,laboratory} |
+ gdcm | 31 | {imaging-dev} |
+ dicomscope | 30 | {imaging} |
amide | 28 | {imaging} |
- gdcm | 27 | {covid-19,imaging} |
- dicom3tools | 26 | {imaging} |
+ gdcm | 25 | {covid-19,imaging} |
htsjdk | 25 | {bio-dev} |
- dcm2niix | 23 | {imaging} |
+ dcm2niix | 24 | {imaging} |
+ dicom3tools | 24 | {imaging} |
odin | 17 | {imaging-dev,imaging} |
- orthanc-webviewer | 15 | {imaging} |
+ orthanc-webviewer | 16 | {imaging} |
gnumed-server | 14 | {covid-19,practice} |
minc-tools | 14 | {imaging} |
insighttoolkit4 | 12 | {imaging-dev} |
@@ -21,124 +21,107 @@ Last-Update: Thu, 29 Jul 2021 01:42:03 +0000
pixelmed | 12 | {imaging} |
gdcm | 11 | {imaging-dev} |
nifticlib | 11 | {imaging} |
- adun.app | 9 | {bio} |
dicomnifti | 9 | {imaging} |
mia | 9 | {imaging} |
ngs-sdk | 9 | {bio-dev} |
+ adun.app | 8 | {bio} |
libminc | 8 | {imaging-dev} |
openslide | 8 | {imaging} |
plastimatch | 8 | {imaging} |
ngs-sdk | 7 | {bio-dev} |
nifticlib | 7 | {imaging-dev} |
- ea-utils | 6 | {bio} |
+ orthanc-dicomweb | 7 | {covid-19,imaging} |
+ orthanc-postgresql | 7 | {imaging} |
king | 6 | {imaging,typesetting} |
- orthanc-dicomweb | 6 | {covid-19,imaging} |
- orthanc-postgresql | 6 | {imaging} |
+ salmid | 6 | {bio} |
dicompyler | 5 | {oncology} |
- jebl2 | 5 | {bio-dev} |
- libdivsufsort | 5 | {bio-dev} |
- librg-utils-perl | 5 | {bio} |
+ ea-utils | 5 | {bio} |
nifti2dicom | 5 | {imaging} |
- oscar | 5 | {tools,data,practice} |
- salmid | 5 | {bio} |
+ orthanc-mysql | 5 | {imaging} |
bart-view | 4 | {imaging} |
- biojava-live | 4 | {bio-dev} |
- blasr | 4 | {bio,bio-ngs} |
- canu | 4 | {bio} |
- embassy-domainatrix | 4 | {cloud,bio} |
- melting | 4 | {cloud,bio} |
+ jebl2 | 4 | {bio-dev} |
+ libdivsufsort | 4 | {bio-dev} |
+ librg-utils-perl | 4 | {bio} |
obitools | 4 | {bio} |
- orthanc-mysql | 4 | {imaging} |
- beast-mcmc | 3 | {bio-phylogeny,bio} |
- bitseq | 3 | {bio} |
- brig | 3 | {bio} |
+ oscar | 4 | {tools,data,practice} |
+ salmon | 4 | {bio,covid-19} |
+ biojava-live | 3 | {bio-dev} |
+ blasr | 3 | {bio,bio-ngs} |
busco | 3 | {bio,covid-19} |
+ canu | 3 | {bio} |
elastix | 3 | {imaging} |
- embassy-domalign | 3 | {cloud,bio} |
- embassy-domsearch | 3 | {bio,cloud} |
- jellyfish1 | 3 | {bio} |
- lagan | 3 | {bio} |
- libpal-java | 3 | {bio-dev} |
+ embassy-domainatrix | 3 | {cloud,bio} |
+ melting | 3 | {cloud,bio} |
ngs-sdk | 3 | {bio-dev} |
nifti2dicom | 3 | {imaging} |
- openslide | 3 | {imaging-dev} |
- pbdagcon | 3 | {bio} |
- phyutility | 3 | {bio,cloud} |
pymia | 3 | {imaging-dev} |
- saint | 3 | {bio} |
- salmon | 3 | {bio,covid-19} |
sight | 3 | {imaging} |
- tracetuner | 3 | {bio} |
treeview | 3 | {bio-phylogeny,bio} |
- anfo | 2 | {bio,cloud} |
- biomaj3-cli | 2 | {cloud} |
- bio-tradis | 2 | {bio-dev,bio} |
- ecopcr | 2 | {bio} |
+ beast-mcmc | 2 | {bio-phylogeny,bio} |
+ bitseq | 2 | {bio} |
+ brig | 2 | {bio} |
+ embassy-domalign | 2 | {cloud,bio} |
+ embassy-domsearch | 2 | {bio,cloud} |
emboss-explorer | 2 | {bio} |
- estscan | 2 | {bio} |
- fsm-lite | 2 | {bio} |
- gatb-core | 2 | {bio} |
getdata | 2 | {bio} |
- ipig | 2 | {bio} |
- jmodeltest | 2 | {bio-phylogeny,bio} |
- libncl | 2 | {bio} |
- librdp-taxonomy-tree-java | 2 | {bio-dev} |
+ jellyfish1 | 2 | {bio} |
+ lagan | 2 | {bio} |
+ libpal-java | 2 | {bio-dev} |
libsbml | 2 | {bio-dev} |
- mauve-aligner | 2 | {bio} |
- metaphlan2 | 2 | {bio} |
- mhap | 2 | {bio,bio-ngs} |
+ openslide | 2 | {imaging-dev} |
orthanc-gdcm | 2 | {imaging} |
- perm | 2 | {cloud,bio} |
- piler | 2 | {bio} |
- prime-phylo | 2 | {cloud,bio} |
- rdp-alignment | 2 | {bio} |
- rdp-classifier | 2 | {bio} |
- rtax | 2 | {cloud,bio} |
- runcircos-gui | 2 | {bio} |
- sga | 2 | {bio} |
- sprai | 2 | {bio} |
+ pbdagcon | 2 | {bio} |
+ phyutility | 2 | {bio,cloud} |
+ saint | 2 | {bio} |
stacks | 2 | {bio} |
staden | 2 | {bio} |
- zalign | 2 | {cloud,bio} |
- arden | 1 | {cloud,bio} |
- assemblytics | 1 | {bio} |
+ tracetuner | 2 | {bio} |
+ anfo | 1 | {bio,cloud} |
bamkit | 1 | {bio,covid-19} |
+ biomaj3-cli | 1 | {cloud} |
+ bio-tradis | 1 | {bio-dev,bio} |
blimps | 1 | {bio} |
cat-bat | 1 | {bio,covid-19} |
- clonalframeml | 1 | {covid-19,bio} |
- clonalorigin | 1 | {bio} |
- delly | 1 | {bio,covid-19} |
dextractor | 1 | {bio,covid-19} |
- fastml | 1 | {bio} |
- ghmm | 1 | {bio} |
- hinge | 1 | {bio} |
+ ecopcr | 1 | {bio} |
+ estscan | 1 | {bio} |
+ fsm-lite | 1 | {bio} |
+ gatb-core | 1 | {bio} |
+ ipig | 1 | {bio} |
+ jmodeltest | 1 | {bio-phylogeny,bio} |
lamarc | 1 | {bio} |
libmuscle | 1 | {bio-dev} |
+ libncl | 1 | {bio} |
+ librdp-taxonomy-tree-java | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
- logol | 1 | {bio} |
+ mauve-aligner | 1 | {bio} |
+ metaphlan2 | 1 | {bio} |
+ mhap | 1 | {bio,bio-ngs} |
microbegps | 1 | {bio} |
nipype | 1 | {imaging-dev,imaging} |
opencfu | 1 | {laboratory} |
orthanc-python | 1 | {covid-19} |
papyrus | 1 | {imaging-dev} |
paraclu | 1 | {cloud,bio} |
- phast | 1 | {bio} |
+ perm | 1 | {cloud,bio} |
+ piler | 1 | {bio} |
+ prime-phylo | 1 | {cloud,bio} |
proalign | 1 | {bio,bio-phylogeny} |
- pscan-chip | 1 | {bio} |
- qcumber | 1 | {bio} |
- quorum | 1 | {bio} |
+ rdp-alignment | 1 | {bio} |
+ rdp-classifier | 1 | {bio} |
+ rtax | 1 | {cloud,bio} |
+ runcircos-gui | 1 | {bio} |
samblaster | 1 | {covid-19,bio} |
+ sga | 1 | {bio} |
sibsim4 | 1 | {cloud,bio} |
sift | 1 | {bio} |
- soapaligner | 1 | {bio} |
- soapsnp | 1 | {bio} |
spaced | 1 | {bio} |
+ sprai | 1 | {bio} |
spread-phy | 1 | {bio,bio-phylogeny} |
- suitename | 1 | {bio} |
- surankco | 1 | {bio} |
- tvc | 1 | {bio} |
- yaha | 1 | {bio} |
+ zalign | 1 | {cloud,bio} |
acedb | 0 | {bio,cloud} |
+ arden | 0 | {cloud,bio} |
+ assemblytics | 0 | {bio} |
atropos | 0 | {bio} |
bambamc | 0 | {bio-dev} |
bbmap | 0 | {bio,covid-19} |
@@ -147,13 +130,19 @@ Last-Update: Thu, 29 Jul 2021 01:42:03 +0000
bmtk | 0 | {psychology} |
bustools | 0 | {bio,covid-19} |
camp | 0 | {imaging-dev} |
+ clonalframeml | 0 | {covid-19,bio} |
+ clonalorigin | 0 | {bio} |
ctn | 0 | {imaging-dev} |
cufflinks | 0 | {cloud,bio} |
+ delly | 0 | {bio,covid-19} |
eegdev | 0 | {imaging-dev} |
emmax | 0 | {bio} |
+ fastml | 0 | {bio} |
fis-gtm | 0 | {his} |
gatb-core | 0 | {bio-dev} |
+ ghmm | 0 | {bio} |
gifticlib | 0 | {imaging-dev} |
+ hinge | 0 | {bio} |
htscodecs | 0 | {covid-19,bio-dev} |
intake | 0 | {bio-dev,bio} |
kmerresistance | 0 | {bio} |
@@ -185,6 +174,7 @@ Last-Update: Thu, 29 Jul 2021 01:42:03 +0000
libseqlib | 0 | {bio-dev} |
libstatgen | 0 | {bio-dev} |
libxdf | 0 | {imaging-dev} |
+ logol | 0 | {bio} |
metastudent-data | 0 | {bio} |
metastudent-data-2 | 0 | {bio} |
mia | 0 | {imaging-dev} |
@@ -198,6 +188,7 @@ Last-Update: Thu, 29 Jul 2021 01:42:03 +0000
parallel-fastq-dump | 0 | {covid-19} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
+ phast | 0 | {bio} |
pigx-rnaseq | 0 | {covid-19,bio} |
pilercr | 0 | {bio} |
pique | 0 | {bio} |
@@ -205,9 +196,12 @@ Last-Update: Thu, 29 Jul 2021 01:42:03 +0000
plasmidid | 0 | {covid-19,bio} |
plasmidseeker | 0 | {bio} |
pplacer | 0 | {bio-phylogeny,covid-19,bio} |
+ pscan-chip | 0 | {bio} |
python-bcbio-gff | 0 | {bio-dev} |
python-seqcluster | 0 | {bio-dev,covid-19} |
python-wdlparse | 0 | {bio-dev} |
+ qcumber | 0 | {bio} |
+ quorum | 0 | {bio} |
rambo-k | 0 | {bio} |
resfinder-db | 0 | {bio} |
sambamba | 0 | {bio} |
@@ -221,16 +215,22 @@ Last-Update: Thu, 29 Jul 2021 01:42:03 +0000
skesa | 0 | {bio} |
skewer | 0 | {bio} |
smrtanalysis | 0 | {bio,covid-19} |
+ soapaligner | 0 | {bio} |
+ soapsnp | 0 | {bio} |
spaln | 0 | {covid-19,bio} |
srf | 0 | {bio-dev} |
+ suitename | 0 | {bio} |
+ surankco | 0 | {bio} |
svim | 0 | {bio} |
thesias | 0 | {bio,covid-19} |
tophat-recondition | 0 | {bio,covid-19} |
trace2dbest | 0 | {bio} |
+ tvc | 0 | {bio} |
varna | 0 | {bio} |
varscan | 0 | {covid-19,bio} |
vienna-rna | 0 | {covid-19,bio} |
xdffileio | 0 | {imaging-dev} |
+ yaha | 0 | {bio} |
yanagiba | 0 | {bio,covid-19} |
mssstest | -1 | {tools} |
python-seqcluster | -1 | {bio} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/8ae9ee8b50b6721bf1aff5f3d4b2802d42d953ab
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/8ae9ee8b50b6721bf1aff5f3d4b2802d42d953ab
You're receiving this email because of your account on salsa.debian.org.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20210729/abb7303c/attachment-0001.htm>