Shruti Sridhar pushed to branch master at Debian Med / estscan
Commits:
5dde01b6 by Shruti Sridhar at 2021-07-31T22:45:02+05:30
Add test data
- - - - -
bed69ef3 by Shruti Sridhar at 2021-07-31T22:49:33+05:30
Add autopkgtests
- - - - -
e9a67128 by Shruti Sridhar at 2021-07-31T22:49:52+05:30
Install docs
- - - - -
e891e600 by Shruti Sridhar at 2021-07-31T22:52:53+05:30
Update changelog
- - - - -
9 changed files:
- + debian/README.test
- debian/changelog
- debian/copyright
- + debian/docs
- + debian/examples
- + debian/tests/control
- + debian/tests/data/Dr.smat
- + debian/tests/data/sequence.fasta
- + debian/tests/run-unit-test
Changes:
=====================================
debian/README.test
=====================================
@@ -0,0 +1,15 @@
+Notes on how this package can be tested.
+────────────────────────────────────────
+
+This package can be tested by running the provided test:
+
+ sh run-unit-test
+
+in order to confirm its integrity.
+
+Notes on the files used for testing
+────────────────────────────────────────
+Files: debian/tests/data/*
+Source: https://sourceforge.net/projects/estscan/files/matrices/from%20EMBNet%20server/
+
+The Dr.smat matrix file was used from the above source and the sequence.fasta was written for testing this package.
\ No newline at end of file
=====================================
debian/changelog
=====================================
@@ -1,3 +1,12 @@
+estscan (3.0.3-6) UNRELEASED; urgency=medium
+
+ * Team Upload.
+ * Add test data
+ * Add autopkgtests
+ * Install docs
+
+ -- Shruti Sridhar <shruti.sridhar99 at gmail.com> Sat, 31 Jul 2021 22:51:02 +0530
+
estscan (3.0.3-5) unstable; urgency=medium
* Team Upload.
=====================================
debian/copyright
=====================================
@@ -15,6 +15,19 @@ Copyright: 1999-2009 Christian Iseli, LICR ITO, <Christian.Iseli at licr.org>
its partners, LICR and ISREC.
License: ESTScan
+Files: debian/tests/data
+Copyright: 1999-2009 Christian Iseli, LICR ITO, <Christian.Iseli at licr.org>
+ 2005 Philipp Bucher
+ 1999-2006 Claudio Lottaz (SIB-ISREC)
+ 1999-2006. Swiss Institute of Bioinformatics,
+ Ludwig Institute for Cancer Research (LICR)
+ Swiss Institute for Experimental Cancer Research (ISREC),
+ .
+ For the purposes of this copyright, the Swiss
+ Institute of Bioinformatics acts on behalf of
+ its partners, LICR and ISREC.
+License: ESTScan
+
License: ESTScan
The ESTScan software is the exclusive property of the copyright
owners, at UNIL - BEP, CH-1015 LAUSANNE, Switzerland. The Swiss
=====================================
debian/docs
=====================================
@@ -0,0 +1,2 @@
+debian/README*
+debian/tests/run-unit-test
\ No newline at end of file
=====================================
debian/examples
=====================================
@@ -0,0 +1 @@
+debian/tests/data/*
\ No newline at end of file
=====================================
debian/tests/control
=====================================
@@ -0,0 +1,3 @@
+Tests: run-unit-test
+Depends: @
+Restrictions: allow-stderr
=====================================
debian/tests/data/Dr.smat
=====================================
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+FORMAT: dr_embl.conf STOP PROFILE 1 12 6 s C+G: 47 100
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=====================================
debian/tests/data/sequence.fasta
=====================================
@@ -0,0 +1,6 @@
+>sequence
+ATGATAGACATGACATAGACATAGACATAGACATAGCATAGACATAGACATAGACATAGC
+>sequence1
+ATGCATGCAGTAGATGACTAGCATTTAGACTAGACGAGAGCAGCATAGCAG
+>sequence2
+ACGTGACTGACTGCAGCTACGACTACGACTACAGCATCAGCATACGACTACAGCTACAG
\ No newline at end of file
=====================================
debian/tests/run-unit-test
=====================================
@@ -0,0 +1,18 @@
+#!/bin/bash
+set -e
+
+pkg=estscan
+
+export LC_ALL=C.UTF-8
+if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
+ AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
+ trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
+fi
+
+cp -a /usr/share/doc/${pkg}/examples/* "${AUTOPKGTEST_TMP}"
+
+cd "${AUTOPKGTEST_TMP}"
+
+
+estscan -M Dr.smat sequence.fasta > output
+[ -s "output" ] && echo 'PASS Test'
View it on GitLab: https://salsa.debian.org/med-team/estscan/-/compare/73ed6a396fc64e71f2efa2c4ce51524ccaf1115f...e891e60098f246fe78e0047212d7d8e8ea1a784f
--
View it on GitLab: https://salsa.debian.org/med-team/estscan/-/compare/73ed6a396fc64e71f2efa2c4ce51524ccaf1115f...e891e60098f246fe78e0047212d7d8e8ea1a784f
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