Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
10be126f by Andreas Tille at 2021-06-01T13:42:21+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,44 +1,46 @@
-Last-Update: Tue, 01 Jun 2021 01:42:03 +0000
+Last-Update: Tue, 01 Jun 2021 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
dcmtk | 173 | {imaging,covid-19} |
orthanc | 92 | {practice,imaging,covid-19} |
- gdcm | 49 | {imaging-dev} |
orthanc-wsi | 49 | {oncology,his,imaging,covid-19,practice,laboratory} |
+ gdcm | 46 | {imaging-dev} |
dicom3tools | 29 | {imaging} |
amide | 27 | {imaging} |
- htsjdk | 26 | {bio-dev} |
+ htsjdk | 27 | {bio-dev} |
+ openslide | 25 | {imaging} |
dcm2niix | 23 | {imaging} |
- dicomscope | 23 | {imaging} |
- openslide | 21 | {imaging} |
+ dicomscope | 22 | {imaging} |
gdcm | 18 | {imaging,covid-19} |
- odin | 18 | {imaging-dev,imaging} |
minc-tools | 17 | {imaging} |
- gdcm | 16 | {imaging-dev} |
+ odin | 17 | {imaging-dev,imaging} |
+ gdcm | 15 | {imaging-dev} |
gnumed-server | 15 | {covid-19,practice} |
- invesalius | 14 | {imaging} |
+ invesalius | 13 | {imaging} |
pixelmed | 13 | {imaging} |
orthanc-webviewer | 12 | {imaging} |
adun.app | 11 | {bio} |
dicomnifti | 11 | {imaging} |
nifticlib | 11 | {imaging} |
- insighttoolkit4 | 10 | {imaging-dev} |
plastimatch | 10 | {imaging} |
+ insighttoolkit4 | 9 | {imaging-dev} |
+ ngs-sdk | 9 | {bio-dev} |
mia | 8 | {imaging} |
ngs-sdk | 8 | {bio-dev} |
king | 7 | {imaging,typesetting} |
- ngs-sdk | 7 | {bio-dev} |
melting | 6 | {cloud,bio} |
+ ngs-sdk | 6 | {bio-dev} |
nifti2dicom | 6 | {imaging} |
+ bamkit | 5 | {bio,covid-19} |
busco | 5 | {covid-19,bio} |
dicompyler | 5 | {oncology} |
nifti2dicom | 5 | {imaging} |
obitools | 5 | {bio} |
openslide | 5 | {imaging-dev} |
salmid | 5 | {bio} |
- bamkit | 4 | {bio,covid-19} |
bart-view | 4 | {imaging} |
+ ea-utils | 4 | {bio} |
jebl2 | 4 | {bio-dev} |
lagan | 4 | {bio} |
libminc | 4 | {imaging-dev} |
@@ -55,8 +57,8 @@ Last-Update: Tue, 01 Jun 2021 01:42:03 +0000
biomaj3-cli | 3 | {cloud} |
bio-tradis | 3 | {bio-dev,bio} |
brig | 3 | {bio} |
- ea-utils | 3 | {bio} |
jellyfish1 | 3 | {bio} |
+ libdivsufsort | 3 | {bio-dev} |
libsbml | 3 | {bio-dev} |
nifticlib | 3 | {imaging-dev} |
nipype | 3 | {imaging,imaging-dev} |
@@ -81,7 +83,6 @@ Last-Update: Tue, 01 Jun 2021 01:42:03 +0000
ghmm | 2 | {bio} |
ipig | 2 | {bio} |
lamarc | 2 | {bio} |
- libdivsufsort | 2 | {bio-dev} |
libncl | 2 | {bio} |
logol | 2 | {bio} |
mauve-aligner | 2 | {bio} |
@@ -113,6 +114,7 @@ Last-Update: Tue, 01 Jun 2021 01:42:03 +0000
fsm-lite | 1 | {bio} |
gatb-core | 1 | {bio} |
hinge | 1 | {bio} |
+ htscodecs | 1 | {covid-19,bio-dev} |
intake | 1 | {bio-dev,bio} |
jmodeltest | 1 | {bio,bio-phylogeny} |
libbio-mage-utils-perl | 1 | {bio-dev} |
@@ -127,9 +129,11 @@ Last-Update: Tue, 01 Jun 2021 01:42:03 +0000
perm | 1 | {bio,cloud} |
piler | 1 | {bio} |
pique | 1 | {bio} |
+ plasmidid | 1 | {covid-19,bio} |
plasmidseeker | 1 | {bio} |
proalign | 1 | {bio-phylogeny,bio} |
python-bcbio-gff | 1 | {bio-dev} |
+ python-wdlparse | 1 | {bio-dev} |
rambo-k | 1 | {bio} |
rdp-alignment | 1 | {bio} |
rdp-classifier | 1 | {bio} |
@@ -165,7 +169,6 @@ Last-Update: Tue, 01 Jun 2021 01:42:03 +0000
fis-gtm | 0 | {his} |
gatb-core | 0 | {bio-dev} |
gifticlib | 0 | {imaging-dev} |
- htscodecs | 0 | {covid-19,bio-dev} |
kmerresistance | 0 | {bio} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
@@ -208,12 +211,10 @@ Last-Update: Tue, 01 Jun 2021 01:42:03 +0000
pbseqlib | 0 | {bio-dev} |
pigx-rnaseq | 0 | {bio,covid-19} |
pilercr | 0 | {bio} |
- plasmidid | 0 | {covid-19,bio} |
pplacer | 0 | {bio,covid-19,bio-phylogeny} |
pscan-chip | 0 | {bio} |
python-epimodels | 0 | {epi} |
python-seqcluster | 0 | {covid-19,bio-dev} |
- python-wdlparse | 0 | {bio-dev} |
q2-sample-classifier | 0 | {bio,bio-dev} |
qcumber | 0 | {bio} |
resfinder-db | 0 | {bio} |
@@ -237,5 +238,5 @@ Last-Update: Tue, 01 Jun 2021 01:42:03 +0000
mssstest | -1 | {tools} |
python-seqcluster | -1 | {bio} |
sight | -1 | {imaging-dev} |
-(267 rows)
+(268 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/10be126f0e24d693bbc6bba458bc757ba1b198a5
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/10be126f0e24d693bbc6bba458bc757ba1b198a5
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