Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
b83f096e by Andreas Tille at 2021-06-03T13:42:20+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,159 +1,168 @@
-Last-Update: Thu, 03 Jun 2021 01:42:04 +0000
+Last-Update: Thu, 03 Jun 2021 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
dcmtk | 173 | {imaging,covid-19} |
- orthanc | 91 | {practice,imaging,covid-19} |
+ orthanc | 92 | {practice,imaging,covid-19} |
orthanc-wsi | 49 | {oncology,his,imaging,covid-19,practice,laboratory} |
- gdcm | 48 | {imaging-dev} |
+ gdcm | 46 | {imaging-dev} |
+ amide | 29 | {imaging} |
dicom3tools | 29 | {imaging} |
- amide | 28 | {imaging} |
- htsjdk | 28 | {bio-dev} |
- openslide | 25 | {imaging} |
- dicomscope | 23 | {imaging} |
- dcm2niix | 20 | {imaging} |
- gdcm | 17 | {imaging,covid-19} |
+ htsjdk | 29 | {bio-dev} |
+ openslide | 26 | {imaging} |
+ dicomscope | 25 | {imaging} |
+ dcm2niix | 21 | {imaging} |
minc-tools | 17 | {imaging} |
- odin | 17 | {imaging-dev,imaging} |
+ gdcm | 16 | {imaging,covid-19} |
+ odin | 16 | {imaging-dev,imaging} |
gdcm | 15 | {imaging-dev} |
gnumed-server | 14 | {covid-19,practice} |
- invesalius | 13 | {imaging} |
- pixelmed | 13 | {imaging} |
- adun.app | 11 | {bio} |
- dicomnifti | 11 | {imaging} |
+ invesalius | 14 | {imaging} |
+ adun.app | 13 | {bio} |
+ dicomnifti | 12 | {imaging} |
+ pixelmed | 12 | {imaging} |
nifticlib | 11 | {imaging} |
orthanc-webviewer | 11 | {imaging} |
insighttoolkit4 | 10 | {imaging-dev} |
plastimatch | 10 | {imaging} |
ngs-sdk | 9 | {bio-dev} |
mia | 8 | {imaging} |
+ ngs-sdk | 8 | {bio-dev} |
king | 7 | {imaging,typesetting} |
- melting | 6 | {cloud,bio} |
+ melting | 7 | {cloud,bio} |
+ nifti2dicom | 7 | {imaging} |
ngs-sdk | 6 | {bio-dev} |
nifti2dicom | 6 | {imaging} |
+ openslide | 6 | {imaging-dev} |
+ runcircos-gui | 6 | {bio} |
+ bamkit | 5 | {bio,covid-19} |
busco | 5 | {covid-19,bio} |
- nifti2dicom | 5 | {imaging} |
+ ea-utils | 5 | {bio} |
+ jebl2 | 5 | {bio-dev} |
obitools | 5 | {bio} |
- openslide | 5 | {imaging-dev} |
salmid | 5 | {bio} |
- bamkit | 4 | {bio,covid-19} |
+ salmon | 5 | {covid-19,bio} |
+ stacks | 5 | {bio} |
+ staden | 5 | {bio} |
+ treeview | 5 | {bio-phylogeny,bio} |
bart-view | 4 | {imaging} |
+ biojava-live | 4 | {bio-dev} |
+ bio-tradis | 4 | {bio-dev,bio} |
+ brig | 4 | {bio} |
dicompyler | 4 | {oncology} |
- ea-utils | 4 | {bio} |
- jebl2 | 4 | {bio-dev} |
+ getdata | 4 | {bio} |
+ jellyfish1 | 4 | {bio} |
lagan | 4 | {bio} |
+ lamarc | 4 | {bio} |
libminc | 4 | {imaging-dev} |
librg-utils-perl | 4 | {bio} |
orthanc-dicomweb | 4 | {imaging,covid-19} |
orthanc-postgresql | 4 | {imaging} |
pymia | 4 | {imaging-dev} |
- runcircos-gui | 4 | {bio} |
- salmon | 4 | {covid-19,bio} |
- stacks | 4 | {bio} |
- staden | 4 | {bio} |
tracetuner | 4 | {bio} |
- biojava-live | 3 | {bio-dev} |
+ anfo | 3 | {cloud,bio} |
+ arden | 3 | {cloud,bio} |
+ assemblytics | 3 | {bio} |
+ beast-mcmc | 3 | {bio-phylogeny,bio} |
biomaj3-cli | 3 | {cloud} |
- bio-tradis | 3 | {bio-dev,bio} |
- brig | 3 | {bio} |
- jellyfish1 | 3 | {bio} |
+ bitseq | 3 | {bio} |
+ canu | 3 | {bio} |
+ clonalframeml | 3 | {covid-19,bio} |
+ elastix | 3 | {imaging} |
+ embassy-domainatrix | 3 | {cloud,bio} |
+ embassy-domalign | 3 | {cloud,bio} |
+ fastml | 3 | {bio} |
+ ghmm | 3 | {bio} |
+ ipig | 3 | {bio} |
libdivsufsort | 3 | {bio-dev} |
+ libncl | 3 | {bio} |
libsbml | 3 | {bio-dev} |
+ mauve-aligner | 3 | {bio} |
+ mhap | 3 | {bio-ngs,bio} |
+ microbegps | 3 | {bio} |
nifticlib | 3 | {imaging-dev} |
nipype | 3 | {imaging,imaging-dev} |
orthanc-mysql | 3 | {imaging} |
- treeview | 3 | {bio-phylogeny,bio} |
- anfo | 2 | {cloud,bio} |
- arden | 2 | {cloud,bio} |
- assemblytics | 2 | {bio} |
- beast-mcmc | 2 | {bio-phylogeny,bio} |
- bitseq | 2 | {bio} |
+ phast | 3 | {bio} |
+ phyutility | 3 | {cloud,bio} |
+ placnet | 3 | {bio} |
+ prime-phylo | 3 | {cloud,bio} |
+ quorum | 3 | {bio} |
+ saint | 3 | {bio} |
+ sambamba | 3 | {bio} |
+ sibsim4 | 3 | {cloud,bio} |
+ spread-phy | 3 | {bio,bio-phylogeny} |
+ atropos | 2 | {bio} |
blasr | 2 | {bio,bio-ngs} |
blimps | 2 | {bio} |
- canu | 2 | {bio} |
cat-bat | 2 | {bio,covid-19} |
- clonalframeml | 2 | {covid-19,bio} |
- elastix | 2 | {imaging} |
- embassy-domainatrix | 2 | {cloud,bio} |
- embassy-domalign | 2 | {cloud,bio} |
+ clonalorigin | 2 | {bio} |
+ ecopcr | 2 | {bio} |
+ embassy-domsearch | 2 | {cloud,bio} |
estscan | 2 | {bio} |
- fastml | 2 | {bio} |
- getdata | 2 | {bio} |
- ghmm | 2 | {bio} |
- ipig | 2 | {bio} |
- lamarc | 2 | {bio} |
- libncl | 2 | {bio} |
+ fsm-lite | 2 | {bio} |
+ gatb-core | 2 | {bio} |
+ jmodeltest | 2 | {bio,bio-phylogeny} |
+ libpal-java | 2 | {bio-dev} |
+ librdp-taxonomy-tree-java | 2 | {bio-dev} |
logol | 2 | {bio} |
- mauve-aligner | 2 | {bio} |
metaphlan2 | 2 | {bio} |
- mhap | 2 | {bio-ngs,bio} |
- microbegps | 2 | {bio} |
orthanc-gdcm | 2 | {imaging} |
oscar | 2 | {tools,practice,data} |
papyrus | 2 | {imaging-dev} |
- phast | 2 | {bio} |
- phyutility | 2 | {cloud,bio} |
- placnet | 2 | {bio} |
- prime-phylo | 2 | {cloud,bio} |
- quorum | 2 | {bio} |
- sambamba | 2 | {bio} |
+ paraclu | 2 | {cloud,bio} |
+ pbdagcon | 2 | {bio} |
+ perm | 2 | {bio,cloud} |
+ piler | 2 | {bio} |
+ proalign | 2 | {bio-phylogeny,bio} |
+ rambo-k | 2 | {bio} |
+ rdp-alignment | 2 | {bio} |
+ rdp-classifier | 2 | {bio} |
+ rtax | 2 | {cloud,bio} |
segemehl | 2 | {bio} |
- sibsim4 | 2 | {cloud,bio} |
+ sga | 2 | {bio} |
sift | 2 | {bio} |
sight | 2 | {imaging} |
- spread-phy | 2 | {bio,bio-phylogeny} |
- atropos | 1 | {bio} |
+ soapaligner | 2 | {bio} |
+ soapsnp | 2 | {bio} |
+ spaced | 2 | {bio} |
+ spaln | 2 | {bio,covid-19} |
+ sprai | 2 | {bio} |
+ suitename | 2 | {bio} |
+ surankco | 2 | {bio} |
+ yaha | 2 | {bio} |
+ zalign | 2 | {cloud,bio} |
bustools | 1 | {bio,covid-19} |
- clonalorigin | 1 | {bio} |
ctn | 1 | {imaging-dev} |
cufflinks | 1 | {bio,cloud} |
delly | 1 | {covid-19,bio} |
- ecopcr | 1 | {bio} |
- embassy-domsearch | 1 | {cloud,bio} |
- fsm-lite | 1 | {bio} |
- gatb-core | 1 | {bio} |
+ emboss-explorer | 1 | {bio} |
hinge | 1 | {bio} |
htscodecs | 1 | {covid-19,bio-dev} |
intake | 1 | {bio-dev,bio} |
- jmodeltest | 1 | {bio,bio-phylogeny} |
+ kmerresistance | 1 | {bio} |
libbio-mage-utils-perl | 1 | {bio-dev} |
libchado-perl | 1 | {bio-dev} |
libmuscle | 1 | {bio-dev} |
- libpal-java | 1 | {bio-dev} |
- librdp-taxonomy-tree-java | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
+ nanosv | 1 | {covid-19,bio} |
orthanc-python | 1 | {covid-19} |
- paraclu | 1 | {cloud,bio} |
- pbdagcon | 1 | {bio} |
- perm | 1 | {bio,cloud} |
- piler | 1 | {bio} |
+ parallel-fastq-dump | 1 | {covid-19} |
pique | 1 | {bio} |
plasmidid | 1 | {covid-19,bio} |
plasmidseeker | 1 | {bio} |
- proalign | 1 | {bio-phylogeny,bio} |
+ pscan-chip | 1 | {bio} |
python-bcbio-gff | 1 | {bio-dev} |
python-wdlparse | 1 | {bio-dev} |
- rambo-k | 1 | {bio} |
- rdp-alignment | 1 | {bio} |
- rdp-classifier | 1 | {bio} |
- rtax | 1 | {cloud,bio} |
- saint | 1 | {bio} |
+ qcumber | 1 | {bio} |
samblaster | 1 | {bio,covid-19} |
samtools-legacy | 1 | {bio-dev} |
- sga | 1 | {bio} |
simpleitk | 1 | {imaging-dev} |
simrisc | 1 | {oncology} |
- soapaligner | 1 | {bio} |
- soapsnp | 1 | {bio} |
- spaced | 1 | {bio} |
- spaln | 1 | {bio,covid-19} |
- sprai | 1 | {bio} |
- suitename | 1 | {bio} |
- surankco | 1 | {bio} |
+ skesa | 1 | {bio} |
tvc | 1 | {bio} |
+ varscan | 1 | {bio,covid-19} |
vienna-rna | 1 | {bio,covid-19} |
- yaha | 1 | {bio} |
- zalign | 1 | {cloud,bio} |
acedb | 0 | {cloud,bio} |
bambamc | 0 | {bio-dev} |
bbmap | 0 | {covid-19,bio} |
@@ -163,12 +172,10 @@ Last-Update: Thu, 03 Jun 2021 01:42:04 +0000
camp | 0 | {imaging-dev} |
dextractor | 0 | {covid-19,bio} |
eegdev | 0 | {imaging-dev} |
- emboss-explorer | 0 | {bio} |
emmax | 0 | {bio} |
fis-gtm | 0 | {his} |
gatb-core | 0 | {bio-dev} |
gifticlib | 0 | {imaging-dev} |
- kmerresistance | 0 | {bio} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
libbioparser-dev | 0 | {bio-dev} |
@@ -199,29 +206,24 @@ Last-Update: Thu, 03 Jun 2021 01:42:04 +0000
mia | 0 | {imaging-dev} |
miaviewit | 0 | {imaging-dev} |
milib | 0 | {bio-dev,covid-19} |
- nanosv | 0 | {covid-19,bio} |
ncbi-vdb | 0 | {bio-dev} |
nifticlib | 0 | {imaging-dev} |
opencfu | 0 | {laboratory} |
opensurgsim | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
- parallel-fastq-dump | 0 | {covid-19} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
pigx-rnaseq | 0 | {bio,covid-19} |
pilercr | 0 | {bio} |
pplacer | 0 | {bio,covid-19,bio-phylogeny} |
- pscan-chip | 0 | {bio} |
python-epimodels | 0 | {epi} |
python-seqcluster | 0 | {covid-19,bio-dev} |
q2-sample-classifier | 0 | {bio,bio-dev} |
- qcumber | 0 | {bio} |
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
shovill | 0 | {covid-19,bio} |
simpleitk | 0 | {imaging-dev} |
- skesa | 0 | {bio} |
skewer | 0 | {bio} |
smrtanalysis | 0 | {covid-19,bio} |
srf | 0 | {bio-dev} |
@@ -230,12 +232,11 @@ Last-Update: Thu, 03 Jun 2021 01:42:04 +0000
tophat-recondition | 0 | {covid-19,bio} |
trace2dbest | 0 | {bio} |
varna | 0 | {bio} |
- varscan | 0 | {bio,covid-19} |
xdffileio | 0 | {imaging-dev} |
yanagiba | 0 | {covid-19,bio} |
libmaus2 | -1 | {bio-dev,covid-19} |
mssstest | -1 | {tools} |
python-seqcluster | -1 | {bio} |
sight | -1 | {imaging-dev} |
-(267 rows)
+(269 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/b83f096e68c8b0f02694853622fb4a0f5446e789
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/b83f096e68c8b0f02694853622fb4a0f5446e789
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