Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
71cb6901 by Andreas Tille at 2021-06-04T13:42:23+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,143 +1,147 @@
-Last-Update: Fri, 04 Jun 2021 01:42:03 +0000
+Last-Update: Fri, 04 Jun 2021 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 173 | {imaging,covid-19} |
- orthanc | 92 | {practice,imaging,covid-19} |
- orthanc-wsi | 49 | {oncology,his,imaging,covid-19,practice,laboratory} |
- gdcm | 46 | {imaging-dev} |
- amide | 29 | {imaging} |
+ dcmtk | 176 | {imaging,covid-19} |
+ orthanc | 93 | {practice,imaging,covid-19} |
+ orthanc-wsi | 50 | {oncology,his,imaging,covid-19,practice,laboratory} |
+ gdcm | 42 | {imaging-dev} |
+ amide | 30 | {imaging} |
dicom3tools | 29 | {imaging} |
htsjdk | 29 | {bio-dev} |
openslide | 26 | {imaging} |
dicomscope | 25 | {imaging} |
- dcm2niix | 21 | {imaging} |
+ dcm2niix | 22 | {imaging} |
minc-tools | 17 | {imaging} |
gdcm | 16 | {imaging,covid-19} |
odin | 16 | {imaging-dev,imaging} |
gdcm | 15 | {imaging-dev} |
+ invesalius | 15 | {imaging} |
+ adun.app | 14 | {bio} |
gnumed-server | 14 | {covid-19,practice} |
- invesalius | 14 | {imaging} |
- adun.app | 13 | {bio} |
dicomnifti | 12 | {imaging} |
pixelmed | 12 | {imaging} |
nifticlib | 11 | {imaging} |
orthanc-webviewer | 11 | {imaging} |
- insighttoolkit4 | 10 | {imaging-dev} |
plastimatch | 10 | {imaging} |
+ insighttoolkit4 | 9 | {imaging-dev} |
ngs-sdk | 9 | {bio-dev} |
+ king | 8 | {imaging,typesetting} |
+ melting | 8 | {cloud,bio} |
mia | 8 | {imaging} |
ngs-sdk | 8 | {bio-dev} |
- king | 7 | {imaging,typesetting} |
- melting | 7 | {cloud,bio} |
nifti2dicom | 7 | {imaging} |
+ runcircos-gui | 7 | {bio} |
+ ea-utils | 6 | {bio} |
+ jebl2 | 6 | {bio-dev} |
ngs-sdk | 6 | {bio-dev} |
nifti2dicom | 6 | {imaging} |
+ obitools | 6 | {bio} |
openslide | 6 | {imaging-dev} |
- runcircos-gui | 6 | {bio} |
+ salmon | 6 | {covid-19,bio} |
+ stacks | 6 | {bio} |
+ treeview | 6 | {bio-phylogeny,bio} |
bamkit | 5 | {bio,covid-19} |
+ biojava-live | 5 | {bio-dev} |
+ bio-tradis | 5 | {bio-dev,bio} |
+ brig | 5 | {bio} |
busco | 5 | {covid-19,bio} |
- ea-utils | 5 | {bio} |
- jebl2 | 5 | {bio-dev} |
- obitools | 5 | {bio} |
+ jellyfish1 | 5 | {bio} |
+ lagan | 5 | {bio} |
+ lamarc | 5 | {bio} |
+ librg-utils-perl | 5 | {bio} |
salmid | 5 | {bio} |
- salmon | 5 | {covid-19,bio} |
- stacks | 5 | {bio} |
staden | 5 | {bio} |
- treeview | 5 | {bio-phylogeny,bio} |
+ tracetuner | 5 | {bio} |
+ anfo | 4 | {cloud,bio} |
+ arden | 4 | {cloud,bio} |
+ assemblytics | 4 | {bio} |
bart-view | 4 | {imaging} |
- biojava-live | 4 | {bio-dev} |
- bio-tradis | 4 | {bio-dev,bio} |
- brig | 4 | {bio} |
+ beast-mcmc | 4 | {bio-phylogeny,bio} |
+ biomaj3-cli | 4 | {cloud} |
+ bitseq | 4 | {bio} |
+ canu | 4 | {bio} |
+ clonalframeml | 4 | {covid-19,bio} |
dicompyler | 4 | {oncology} |
+ elastix | 4 | {imaging} |
+ embassy-domainatrix | 4 | {cloud,bio} |
+ embassy-domalign | 4 | {cloud,bio} |
+ fastml | 4 | {bio} |
getdata | 4 | {bio} |
- jellyfish1 | 4 | {bio} |
- lagan | 4 | {bio} |
- lamarc | 4 | {bio} |
+ ghmm | 4 | {bio} |
+ ipig | 4 | {bio} |
libminc | 4 | {imaging-dev} |
- librg-utils-perl | 4 | {bio} |
+ libncl | 4 | {bio} |
+ mauve-aligner | 4 | {bio} |
+ mhap | 4 | {bio-ngs,bio} |
+ microbegps | 4 | {bio} |
orthanc-dicomweb | 4 | {imaging,covid-19} |
orthanc-postgresql | 4 | {imaging} |
- pymia | 4 | {imaging-dev} |
- tracetuner | 4 | {bio} |
- anfo | 3 | {cloud,bio} |
- arden | 3 | {cloud,bio} |
- assemblytics | 3 | {bio} |
- beast-mcmc | 3 | {bio-phylogeny,bio} |
- biomaj3-cli | 3 | {cloud} |
- bitseq | 3 | {bio} |
- canu | 3 | {bio} |
- clonalframeml | 3 | {covid-19,bio} |
- elastix | 3 | {imaging} |
- embassy-domainatrix | 3 | {cloud,bio} |
- embassy-domalign | 3 | {cloud,bio} |
- fastml | 3 | {bio} |
- ghmm | 3 | {bio} |
- ipig | 3 | {bio} |
+ phast | 4 | {bio} |
+ phyutility | 4 | {cloud,bio} |
+ placnet | 4 | {bio} |
+ prime-phylo | 4 | {cloud,bio} |
+ quorum | 4 | {bio} |
+ saint | 4 | {bio} |
+ sibsim4 | 4 | {cloud,bio} |
+ spread-phy | 4 | {bio,bio-phylogeny} |
+ blasr | 3 | {bio,bio-ngs} |
+ clonalorigin | 3 | {bio} |
+ ecopcr | 3 | {bio} |
+ embassy-domsearch | 3 | {cloud,bio} |
+ estscan | 3 | {bio} |
+ fsm-lite | 3 | {bio} |
+ gatb-core | 3 | {bio} |
+ jmodeltest | 3 | {bio,bio-phylogeny} |
libdivsufsort | 3 | {bio-dev} |
- libncl | 3 | {bio} |
+ libpal-java | 3 | {bio-dev} |
+ librdp-taxonomy-tree-java | 3 | {bio-dev} |
libsbml | 3 | {bio-dev} |
- mauve-aligner | 3 | {bio} |
- mhap | 3 | {bio-ngs,bio} |
- microbegps | 3 | {bio} |
+ logol | 3 | {bio} |
+ metaphlan2 | 3 | {bio} |
nifticlib | 3 | {imaging-dev} |
nipype | 3 | {imaging,imaging-dev} |
orthanc-mysql | 3 | {imaging} |
- phast | 3 | {bio} |
- phyutility | 3 | {cloud,bio} |
- placnet | 3 | {bio} |
- prime-phylo | 3 | {cloud,bio} |
- quorum | 3 | {bio} |
- saint | 3 | {bio} |
+ oscar | 3 | {tools,practice,data} |
+ paraclu | 3 | {cloud,bio} |
+ pbdagcon | 3 | {bio} |
+ perm | 3 | {bio,cloud} |
+ piler | 3 | {bio} |
+ proalign | 3 | {bio-phylogeny,bio} |
+ pymia | 3 | {imaging-dev} |
+ rambo-k | 3 | {bio} |
+ rdp-alignment | 3 | {bio} |
+ rdp-classifier | 3 | {bio} |
+ rtax | 3 | {cloud,bio} |
sambamba | 3 | {bio} |
- sibsim4 | 3 | {cloud,bio} |
- spread-phy | 3 | {bio,bio-phylogeny} |
+ segemehl | 3 | {bio} |
+ sga | 3 | {bio} |
+ soapaligner | 3 | {bio} |
+ soapsnp | 3 | {bio} |
+ spaced | 3 | {bio} |
+ sprai | 3 | {bio} |
+ suitename | 3 | {bio} |
+ surankco | 3 | {bio} |
+ yaha | 3 | {bio} |
+ zalign | 3 | {cloud,bio} |
atropos | 2 | {bio} |
- blasr | 2 | {bio,bio-ngs} |
blimps | 2 | {bio} |
cat-bat | 2 | {bio,covid-19} |
- clonalorigin | 2 | {bio} |
- ecopcr | 2 | {bio} |
- embassy-domsearch | 2 | {cloud,bio} |
- estscan | 2 | {bio} |
- fsm-lite | 2 | {bio} |
- gatb-core | 2 | {bio} |
- jmodeltest | 2 | {bio,bio-phylogeny} |
- libpal-java | 2 | {bio-dev} |
- librdp-taxonomy-tree-java | 2 | {bio-dev} |
- logol | 2 | {bio} |
- metaphlan2 | 2 | {bio} |
+ delly | 2 | {covid-19,bio} |
+ emboss-explorer | 2 | {bio} |
+ hinge | 2 | {bio} |
orthanc-gdcm | 2 | {imaging} |
- oscar | 2 | {tools,practice,data} |
papyrus | 2 | {imaging-dev} |
- paraclu | 2 | {cloud,bio} |
- pbdagcon | 2 | {bio} |
- perm | 2 | {bio,cloud} |
- piler | 2 | {bio} |
- proalign | 2 | {bio-phylogeny,bio} |
- rambo-k | 2 | {bio} |
- rdp-alignment | 2 | {bio} |
- rdp-classifier | 2 | {bio} |
- rtax | 2 | {cloud,bio} |
- segemehl | 2 | {bio} |
- sga | 2 | {bio} |
+ plasmidseeker | 2 | {bio} |
+ pscan-chip | 2 | {bio} |
+ qcumber | 2 | {bio} |
+ samblaster | 2 | {bio,covid-19} |
sift | 2 | {bio} |
sight | 2 | {imaging} |
- soapaligner | 2 | {bio} |
- soapsnp | 2 | {bio} |
- spaced | 2 | {bio} |
spaln | 2 | {bio,covid-19} |
- sprai | 2 | {bio} |
- suitename | 2 | {bio} |
- surankco | 2 | {bio} |
- yaha | 2 | {bio} |
- zalign | 2 | {cloud,bio} |
+ tvc | 2 | {bio} |
bustools | 1 | {bio,covid-19} |
- ctn | 1 | {imaging-dev} |
cufflinks | 1 | {bio,cloud} |
- delly | 1 | {covid-19,bio} |
- emboss-explorer | 1 | {bio} |
- hinge | 1 | {bio} |
htscodecs | 1 | {covid-19,bio-dev} |
intake | 1 | {bio-dev,bio} |
kmerresistance | 1 | {bio} |
@@ -150,17 +154,12 @@ Last-Update: Fri, 04 Jun 2021 01:42:03 +0000
parallel-fastq-dump | 1 | {covid-19} |
pique | 1 | {bio} |
plasmidid | 1 | {covid-19,bio} |
- plasmidseeker | 1 | {bio} |
- pscan-chip | 1 | {bio} |
python-bcbio-gff | 1 | {bio-dev} |
python-wdlparse | 1 | {bio-dev} |
- qcumber | 1 | {bio} |
- samblaster | 1 | {bio,covid-19} |
samtools-legacy | 1 | {bio-dev} |
simpleitk | 1 | {imaging-dev} |
simrisc | 1 | {oncology} |
skesa | 1 | {bio} |
- tvc | 1 | {bio} |
varscan | 1 | {bio,covid-19} |
vienna-rna | 1 | {bio,covid-19} |
acedb | 0 | {cloud,bio} |
@@ -170,6 +169,7 @@ Last-Update: Fri, 04 Jun 2021 01:42:03 +0000
biosyntax | 0 | {bio} |
bmtk | 0 | {psychology} |
camp | 0 | {imaging-dev} |
+ ctn | 0 | {imaging-dev} |
dextractor | 0 | {covid-19,bio} |
eegdev | 0 | {imaging-dev} |
emmax | 0 | {bio} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/71cb6901f75b4b591339d747767ddee019eddc94
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/71cb6901f75b4b591339d747767ddee019eddc94
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