Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
74b3a366 by Andreas Tille at 2021-06-06T13:42:22+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,32 +1,32 @@
-Last-Update: Sun, 06 Jun 2021 01:42:04 +0000
+Last-Update: Sun, 06 Jun 2021 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 173 | {imaging,covid-19} |
- orthanc | 91 | {practice,imaging,covid-19} |
+ dcmtk | 172 | {imaging,covid-19} |
+ orthanc | 90 | {practice,imaging,covid-19} |
orthanc-wsi | 50 | {oncology,his,imaging,covid-19,practice,laboratory} |
- gdcm | 41 | {imaging-dev} |
+ gdcm | 42 | {imaging-dev} |
amide | 30 | {imaging} |
dicom3tools | 29 | {imaging} |
htsjdk | 27 | {bio-dev} |
openslide | 26 | {imaging} |
dicomscope | 25 | {imaging} |
- dcm2niix | 22 | {imaging} |
+ dcm2niix | 21 | {imaging} |
minc-tools | 17 | {imaging} |
- gdcm | 16 | {imaging,covid-19} |
- odin | 16 | {imaging-dev,imaging} |
- gdcm | 15 | {imaging-dev} |
+ gdcm | 15 | {imaging,covid-19} |
invesalius | 15 | {imaging} |
+ odin | 15 | {imaging-dev,imaging} |
adun.app | 14 | {bio} |
- gnumed-server | 14 | {covid-19,practice} |
+ gdcm | 14 | {imaging-dev} |
+ gnumed-server | 13 | {covid-19,practice} |
dicomnifti | 12 | {imaging} |
pixelmed | 12 | {imaging} |
nifticlib | 11 | {imaging} |
- orthanc-webviewer | 11 | {imaging} |
insighttoolkit4 | 10 | {imaging-dev} |
+ orthanc-webviewer | 10 | {imaging} |
plastimatch | 10 | {imaging} |
+ king | 9 | {imaging,typesetting} |
melting | 9 | {cloud,bio} |
- king | 8 | {imaging,typesetting} |
mia | 8 | {imaging} |
ngs-sdk | 8 | {bio-dev} |
nifti2dicom | 7 | {imaging} |
@@ -34,13 +34,11 @@ Last-Update: Sun, 06 Jun 2021 01:42:04 +0000
ea-utils | 6 | {bio} |
jebl2 | 6 | {bio-dev} |
nifti2dicom | 6 | {imaging} |
- obitools | 6 | {bio} |
openslide | 6 | {imaging-dev} |
salmon | 6 | {covid-19,bio} |
stacks | 6 | {bio} |
staden | 6 | {bio} |
treeview | 6 | {bio-phylogeny,bio} |
- bamkit | 5 | {bio,covid-19} |
biojava-live | 5 | {bio-dev} |
bio-tradis | 5 | {bio-dev,bio} |
brig | 5 | {bio} |
@@ -50,6 +48,8 @@ Last-Update: Sun, 06 Jun 2021 01:42:04 +0000
lamarc | 5 | {bio} |
librg-utils-perl | 5 | {bio} |
ngs-sdk | 5 | {bio-dev} |
+ obitools | 5 | {bio} |
+ orthanc-dicomweb | 5 | {imaging,covid-19} |
salmid | 5 | {bio} |
tracetuner | 5 | {bio} |
anfo | 4 | {cloud,bio} |
@@ -57,8 +57,8 @@ Last-Update: Sun, 06 Jun 2021 01:42:04 +0000
assemblytics | 4 | {bio} |
bart-view | 4 | {imaging} |
beast-mcmc | 4 | {bio-phylogeny,bio} |
- biomaj3-cli | 4 | {cloud} |
bitseq | 4 | {bio} |
+ blasr | 4 | {bio,bio-ngs} |
canu | 4 | {bio} |
clonalframeml | 4 | {covid-19,bio} |
dicompyler | 4 | {oncology} |
@@ -74,18 +74,19 @@ Last-Update: Sun, 06 Jun 2021 01:42:04 +0000
mauve-aligner | 4 | {bio} |
mhap | 4 | {bio-ngs,bio} |
microbegps | 4 | {bio} |
- orthanc-dicomweb | 4 | {imaging,covid-19} |
- orthanc-postgresql | 4 | {imaging} |
phast | 4 | {bio} |
phyutility | 4 | {cloud,bio} |
piler | 4 | {bio} |
placnet | 4 | {bio} |
prime-phylo | 4 | {cloud,bio} |
+ pymia | 4 | {imaging-dev} |
quorum | 4 | {bio} |
+ rdp-alignment | 4 | {bio} |
saint | 4 | {bio} |
sibsim4 | 4 | {cloud,bio} |
spread-phy | 4 | {bio,bio-phylogeny} |
- blasr | 3 | {bio,bio-ngs} |
+ bamkit | 3 | {bio,covid-19} |
+ biomaj3-cli | 3 | {cloud} |
clonalorigin | 3 | {bio} |
ecopcr | 3 | {bio} |
embassy-domsearch | 3 | {cloud,bio} |
@@ -101,15 +102,13 @@ Last-Update: Sun, 06 Jun 2021 01:42:04 +0000
metaphlan2 | 3 | {bio} |
nifticlib | 3 | {imaging-dev} |
nipype | 3 | {imaging,imaging-dev} |
- orthanc-mysql | 3 | {imaging} |
+ orthanc-postgresql | 3 | {imaging} |
oscar | 3 | {tools,practice,data} |
paraclu | 3 | {cloud,bio} |
pbdagcon | 3 | {bio} |
perm | 3 | {bio,cloud} |
proalign | 3 | {bio-phylogeny,bio} |
- pymia | 3 | {imaging-dev} |
rambo-k | 3 | {bio} |
- rdp-alignment | 3 | {bio} |
rdp-classifier | 3 | {bio} |
rtax | 3 | {cloud,bio} |
sambamba | 3 | {bio} |
@@ -124,20 +123,20 @@ Last-Update: Sun, 06 Jun 2021 01:42:04 +0000
yaha | 3 | {bio} |
zalign | 3 | {cloud,bio} |
atropos | 2 | {bio} |
- blimps | 2 | {bio} |
cat-bat | 2 | {bio,covid-19} |
delly | 2 | {covid-19,bio} |
hinge | 2 | {bio} |
libsbml | 2 | {bio-dev} |
orthanc-gdcm | 2 | {imaging} |
+ orthanc-mysql | 2 | {imaging} |
plasmidseeker | 2 | {bio} |
pscan-chip | 2 | {bio} |
qcumber | 2 | {bio} |
samblaster | 2 | {bio,covid-19} |
- sift | 2 | {bio} |
sight | 2 | {imaging} |
spaln | 2 | {bio,covid-19} |
tvc | 2 | {bio} |
+ blimps | 1 | {bio} |
bustools | 1 | {bio,covid-19} |
cufflinks | 1 | {bio,cloud} |
htscodecs | 1 | {covid-19,bio-dev} |
@@ -148,6 +147,7 @@ Last-Update: Sun, 06 Jun 2021 01:42:04 +0000
libmuscle | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
nanosv | 1 | {covid-19,bio} |
+ opencfu | 1 | {laboratory} |
orthanc-python | 1 | {covid-19} |
papyrus | 1 | {imaging-dev} |
parallel-fastq-dump | 1 | {covid-19} |
@@ -156,9 +156,11 @@ Last-Update: Sun, 06 Jun 2021 01:42:04 +0000
python-bcbio-gff | 1 | {bio-dev} |
python-wdlparse | 1 | {bio-dev} |
samtools-legacy | 1 | {bio-dev} |
+ sift | 1 | {bio} |
simpleitk | 1 | {imaging-dev} |
simrisc | 1 | {oncology} |
skesa | 1 | {bio} |
+ srf | 1 | {bio-dev} |
varscan | 1 | {bio,covid-19} |
vienna-rna | 1 | {bio,covid-19} |
acedb | 0 | {cloud,bio} |
@@ -207,7 +209,6 @@ Last-Update: Sun, 06 Jun 2021 01:42:04 +0000
milib | 0 | {bio-dev,covid-19} |
ncbi-vdb | 0 | {bio-dev} |
nifticlib | 0 | {imaging-dev} |
- opencfu | 0 | {laboratory} |
opensurgsim | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
pbcopper | 0 | {bio-dev} |
@@ -225,7 +226,6 @@ Last-Update: Sun, 06 Jun 2021 01:42:04 +0000
simpleitk | 0 | {imaging-dev} |
skewer | 0 | {bio} |
smrtanalysis | 0 | {covid-19,bio} |
- srf | 0 | {bio-dev} |
svim | 0 | {bio} |
thesias | 0 | {covid-19,bio} |
tophat-recondition | 0 | {covid-19,bio} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/74b3a366c3d0e28172aaf68a1b4c732e6a62c8a0
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/74b3a366c3d0e28172aaf68a1b4c732e6a62c8a0
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