[med-svn] [Git][med-team/cmdock][master] Fixing a few more lintian issues, d/copyright

Tue Jun 8 18:19:20 BST 2021


Steffen Möller pushed to branch master at Debian Med / cmdock


Commits:
2faa208d by Steffen Moeller at 2021-06-08T19:18:51+02:00
Fixing a few more lintian issues, d/copyright

- - - - -


6 changed files:

- debian/control
- debian/copyright
- + debian/libcmdock-dev.dirs
- + debian/patches/csh2tcsh.patch
- debian/patches/series
- debian/rules


Changes:

=====================================
debian/control
=====================================
@@ -39,3 +39,14 @@ Description: library of cmdock
  find inhibitors of the SARS-CoV-2 virus.
  .
  This package provides its shared library.
+
+Package: libcmdock-dev
+Architecture: all
+Section: devel
+Depends:  ${misc:Depends}, libdmdock0
+Description: include files for cmdock library
+ cmdock performs docking / in silico drug screening as a
+ derivative of rDock and is core to the SiDock at Home project to
+ find inhibitors of the SARS-CoV-2 virus.
+ .
+ This package provides files for the development with cmdock.


=====================================
debian/copyright
=====================================
@@ -9,9 +9,54 @@ Copyright: 1998-2006 RiboTargets (subsequently Vernalis (R&D) Ltd)
            2019-2020 RxTx
 License: LGPL-3.0+
 
+Files: include/indicators/*
+Copyright: Copyright (c) 2019 Pranav
+License: MIT
+ Permission is hereby granted, free of charge, to any person obtaining a copy
+ of this software and associated documentation files (the "Software"), to deal
+ in the Software without restriction, including without limitation the rights
+ to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+ copies of the Software, and to permit persons to whom the Software is
+ furnished to do so, subject to the following conditions:
+ .
+ The above copyright notice and this permission notice shall be included in all
+ copies or substantial portions of the Software.
+ .
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+ FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+ AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+ OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+ SOFTWARE.
+
 Files: include/indicators/termcolor.hpp
 Copyright: 2013 Ihor Kalnytskyi
-License: BSD
+License: BSD-3-Clause
+ Redistribution and use in source and binary forms, with or without
+ modification, are permitted provided that the following conditions
+ are met:
+ 1. Redistributions of source code must retain the above copyright
+    notice, this list of conditions and the following disclaimer.
+ 2. Redistributions in binary form must reproduce the above copyright
+    notice, this list of conditions and the following disclaimer in the
+    documentation and/or other materials provided with the distribution.
+ 3. Neither the name of the University nor the names of its contributors
+    may be used to endorse or promote products derived from this software
+    without specific prior written permission.
+ .
+ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
+ ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
+ LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
+ A PARTICULAR PURPOSE ARE DISCLAIMED.  IN NO EVENT SHALL THE HOLDERS OR
+ CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
+ EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
+ PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
+ PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
+ LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
+ NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
+ SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
 
 Files: debian/*
 Copyright: 2021 Steffen Moeller <moeller at debian.org>


=====================================
debian/libcmdock-dev.dirs
=====================================
@@ -0,0 +1 @@
+usr/lib


=====================================
debian/patches/csh2tcsh.patch
=====================================
@@ -0,0 +1,10 @@
+Index: cmdock/bin/make_grid.csh
+===================================================================
+--- cmdock.orig/bin/make_grid.csh
++++ cmdock/bin/make_grid.csh
+@@ -1,4 +1,4 @@
+-#!/bin/csh -f
++#!/bin/tcsh -f
+ # Creates vdW grids for all receptor prm files listed on command line
+ #
+ set gridstep = 0.3


=====================================
debian/patches/series
=====================================
@@ -1,3 +1,4 @@
 noPCGtest.patch
 installdir.patch
 pythonVersion.patch
+csh2tcsh.patch


=====================================
debian/rules
=====================================
@@ -6,3 +6,12 @@ export DEB_CFLAGS_MAINT_APPEND  = -Wall -pedantic
 
 %:
 	dh $@
+
+override_dh_auto_install:
+	dh_auto_install
+	rm -rf debian/cmdock/usr/bin/legacy
+
+override_dh_install:
+	dh_install
+	rm -rf debian/cmdock/usr/bin/legacy
+	mv debian/libcmdock0/usr/lib/libcmdock.so debian/libcmdock-dev/usr/lib/libcmdock.so



View it on GitLab: https://salsa.debian.org/med-team/cmdock/-/commit/2faa208d7a4036b4838f0cefde138d1cbaa48b83

-- 
View it on GitLab: https://salsa.debian.org/med-team/cmdock/-/commit/2faa208d7a4036b4838f0cefde138d1cbaa48b83
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