Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
39c778fc by Andreas Tille at 2021-06-09T13:42:21+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,41 +1,40 @@
-Last-Update: Wed, 09 Jun 2021 01:42:04 +0000
+Last-Update: Wed, 09 Jun 2021 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 171 | {imaging,covid-19} |
- orthanc | 89 | {practice,imaging,covid-19} |
- orthanc-wsi | 49 | {oncology,his,imaging,covid-19,practice,laboratory} |
+ dcmtk | 172 | {imaging,covid-19} |
+ orthanc | 88 | {practice,imaging,covid-19} |
+ orthanc-wsi | 48 | {oncology,his,imaging,covid-19,practice,laboratory} |
gdcm | 41 | {imaging-dev} |
- amide | 29 | {imaging} |
dicom3tools | 29 | {imaging} |
- htsjdk | 26 | {bio-dev} |
+ amide | 28 | {imaging} |
+ htsjdk | 25 | {bio-dev} |
openslide | 25 | {imaging} |
dicomscope | 23 | {imaging} |
dcm2niix | 20 | {imaging} |
- minc-tools | 17 | {imaging} |
- adun.app | 15 | {bio} |
- gdcm | 14 | {imaging,covid-19} |
+ minc-tools | 16 | {imaging} |
+ adun.app | 14 | {bio} |
invesalius | 14 | {imaging} |
odin | 14 | {imaging-dev,imaging} |
+ gdcm | 13 | {imaging,covid-19} |
gdcm | 13 | {imaging-dev} |
gnumed-server | 13 | {covid-19,practice} |
dicomnifti | 11 | {imaging} |
+ insighttoolkit4 | 11 | {imaging-dev} |
ngs-sdk | 11 | {bio-dev} |
- nifticlib | 11 | {imaging} |
orthanc-webviewer | 11 | {imaging} |
- pixelmed | 11 | {imaging} |
- insighttoolkit4 | 10 | {imaging-dev} |
- melting | 9 | {cloud,bio} |
+ nifticlib | 10 | {imaging} |
+ pixelmed | 10 | {imaging} |
+ ngs-sdk | 9 | {bio-dev} |
plastimatch | 9 | {imaging} |
- ngs-sdk | 8 | {bio-dev} |
+ melting | 8 | {cloud,bio} |
ea-utils | 7 | {bio} |
- mia | 7 | {imaging} |
nifti2dicom | 7 | {imaging} |
runcircos-gui | 7 | {bio} |
salmon | 7 | {covid-19,bio} |
- jebl2 | 6 | {bio-dev} |
king | 6 | {imaging,typesetting} |
librg-utils-perl | 6 | {bio} |
+ mia | 6 | {imaging} |
ngs-sdk | 6 | {bio-dev} |
nifti2dicom | 6 | {imaging} |
openslide | 6 | {imaging-dev} |
@@ -43,76 +42,71 @@ Last-Update: Wed, 09 Jun 2021 01:42:04 +0000
staden | 6 | {bio} |
treeview | 6 | {bio-phylogeny,bio} |
biojava-live | 5 | {bio-dev} |
- bio-tradis | 5 | {bio-dev,bio} |
- brig | 5 | {bio} |
- busco | 5 | {covid-19,bio} |
- jellyfish1 | 5 | {bio} |
- lagan | 5 | {bio} |
- lamarc | 5 | {bio} |
- obitools | 5 | {bio} |
+ jebl2 | 5 | {bio-dev} |
orthanc-dicomweb | 5 | {imaging,covid-19} |
salmid | 5 | {bio} |
- tracetuner | 5 | {bio} |
- anfo | 4 | {cloud,bio} |
- arden | 4 | {cloud,bio} |
- assemblytics | 4 | {bio} |
- beast-mcmc | 4 | {bio-phylogeny,bio} |
- bitseq | 4 | {bio} |
- blasr | 4 | {bio,bio-ngs} |
- canu | 4 | {bio} |
- clonalframeml | 4 | {covid-19,bio} |
+ bio-tradis | 4 | {bio-dev,bio} |
+ brig | 4 | {bio} |
+ busco | 4 | {covid-19,bio} |
dicompyler | 4 | {oncology} |
elastix | 4 | {imaging} |
- embassy-domainatrix | 4 | {cloud,bio} |
- embassy-domalign | 4 | {cloud,bio} |
- fastml | 4 | {bio} |
getdata | 4 | {bio} |
- ghmm | 4 | {bio} |
- ipig | 4 | {bio} |
+ jellyfish1 | 4 | {bio} |
+ lagan | 4 | {bio} |
+ lamarc | 4 | {bio} |
libminc | 4 | {imaging-dev} |
- libncl | 4 | {bio} |
- mauve-aligner | 4 | {bio} |
- mhap | 4 | {bio-ngs,bio} |
- microbegps | 4 | {bio} |
+ obitools | 4 | {bio} |
orthanc-postgresql | 4 | {imaging} |
- phast | 4 | {bio} |
phyutility | 4 | {cloud,bio} |
piler | 4 | {bio} |
placnet | 4 | {bio} |
- prime-phylo | 4 | {cloud,bio} |
pymia | 4 | {imaging-dev} |
- quorum | 4 | {bio} |
rdp-alignment | 4 | {bio} |
saint | 4 | {bio} |
sibsim4 | 4 | {cloud,bio} |
spread-phy | 4 | {bio,bio-phylogeny} |
- bamkit | 3 | {bio,covid-19} |
+ tracetuner | 4 | {bio} |
+ anfo | 3 | {cloud,bio} |
+ arden | 3 | {cloud,bio} |
+ assemblytics | 3 | {bio} |
bart-view | 3 | {imaging} |
- biomaj3-cli | 3 | {cloud} |
- clonalorigin | 3 | {bio} |
+ beast-mcmc | 3 | {bio-phylogeny,bio} |
+ bitseq | 3 | {bio} |
+ blasr | 3 | {bio,bio-ngs} |
+ canu | 3 | {bio} |
+ clonalframeml | 3 | {covid-19,bio} |
ecopcr | 3 | {bio} |
+ embassy-domainatrix | 3 | {cloud,bio} |
+ embassy-domalign | 3 | {cloud,bio} |
embassy-domsearch | 3 | {cloud,bio} |
emboss-explorer | 3 | {bio} |
- estscan | 3 | {bio} |
+ fastml | 3 | {bio} |
fsm-lite | 3 | {bio} |
gatb-core | 3 | {bio} |
+ ghmm | 3 | {bio} |
+ ipig | 3 | {bio} |
jmodeltest | 3 | {bio,bio-phylogeny} |
libdivsufsort | 3 | {bio-dev} |
+ libncl | 3 | {bio} |
libpal-java | 3 | {bio-dev} |
librdp-taxonomy-tree-java | 3 | {bio-dev} |
logol | 3 | {bio} |
- metaphlan2 | 3 | {bio} |
+ mauve-aligner | 3 | {bio} |
+ mhap | 3 | {bio-ngs,bio} |
+ microbegps | 3 | {bio} |
nipype | 3 | {imaging,imaging-dev} |
oscar | 3 | {tools,practice,data} |
paraclu | 3 | {cloud,bio} |
pbdagcon | 3 | {bio} |
perm | 3 | {bio,cloud} |
+ phast | 3 | {bio} |
+ prime-phylo | 3 | {cloud,bio} |
proalign | 3 | {bio-phylogeny,bio} |
+ quorum | 3 | {bio} |
rambo-k | 3 | {bio} |
rdp-classifier | 3 | {bio} |
rtax | 3 | {cloud,bio} |
sambamba | 3 | {bio} |
- segemehl | 3 | {bio} |
sga | 3 | {bio} |
sight | 3 | {imaging} |
soapaligner | 3 | {bio} |
@@ -123,11 +117,14 @@ Last-Update: Wed, 09 Jun 2021 01:42:04 +0000
surankco | 3 | {bio} |
yaha | 3 | {bio} |
zalign | 3 | {cloud,bio} |
- atropos | 2 | {bio} |
- cat-bat | 2 | {bio,covid-19} |
+ bamkit | 2 | {bio,covid-19} |
+ biomaj3-cli | 2 | {cloud} |
+ clonalorigin | 2 | {bio} |
delly | 2 | {covid-19,bio} |
+ estscan | 2 | {bio} |
hinge | 2 | {bio} |
libsbml | 2 | {bio-dev} |
+ metaphlan2 | 2 | {bio} |
nifticlib | 2 | {imaging-dev} |
orthanc-gdcm | 2 | {imaging} |
orthanc-mysql | 2 | {imaging} |
@@ -135,16 +132,18 @@ Last-Update: Wed, 09 Jun 2021 01:42:04 +0000
pscan-chip | 2 | {bio} |
qcumber | 2 | {bio} |
samblaster | 2 | {bio,covid-19} |
- spaln | 2 | {bio,covid-19} |
+ segemehl | 2 | {bio} |
tvc | 2 | {bio} |
+ atropos | 1 | {bio} |
blimps | 1 | {bio} |
- bustools | 1 | {bio,covid-19} |
+ cat-bat | 1 | {bio,covid-19} |
cufflinks | 1 | {bio,cloud} |
htscodecs | 1 | {covid-19,bio-dev} |
intake | 1 | {bio-dev,bio} |
kmerresistance | 1 | {bio} |
libbio-mage-utils-perl | 1 | {bio-dev} |
libchado-perl | 1 | {bio-dev} |
+ libctapimkt | 1 | {practice} |
libmuscle | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
nanosv | 1 | {covid-19,bio} |
@@ -152,15 +151,14 @@ Last-Update: Wed, 09 Jun 2021 01:42:04 +0000
orthanc-python | 1 | {covid-19} |
papyrus | 1 | {imaging-dev} |
parallel-fastq-dump | 1 | {covid-19} |
- pique | 1 | {bio} |
plasmidid | 1 | {covid-19,bio} |
- python-bcbio-gff | 1 | {bio-dev} |
python-wdlparse | 1 | {bio-dev} |
samtools-legacy | 1 | {bio-dev} |
sift | 1 | {bio} |
simpleitk | 1 | {imaging-dev} |
simrisc | 1 | {oncology} |
skesa | 1 | {bio} |
+ spaln | 1 | {bio,covid-19} |
srf | 1 | {bio-dev} |
varscan | 1 | {bio,covid-19} |
vienna-rna | 1 | {bio,covid-19} |
@@ -170,6 +168,7 @@ Last-Update: Wed, 09 Jun 2021 01:42:04 +0000
biojava4-live | 0 | {bio-dev} |
biosyntax | 0 | {bio} |
bmtk | 0 | {psychology} |
+ bustools | 0 | {bio,covid-19} |
camp | 0 | {imaging-dev} |
ctn | 0 | {imaging-dev} |
dextractor | 0 | {covid-19,bio} |
@@ -188,7 +187,6 @@ Last-Update: Wed, 09 Jun 2021 01:42:04 +0000
libbpp-raa | 0 | {bio-dev} |
libbpp-seq | 0 | {bio-dev} |
libbpp-seq-omics | 0 | {bio-dev} |
- libctapimkt | 0 | {practice} |
libdisorder | 0 | {bio-dev} |
libgenome | 0 | {bio-dev} |
libgkarrays | 0 | {bio-dev} |
@@ -216,7 +214,9 @@ Last-Update: Wed, 09 Jun 2021 01:42:04 +0000
pbseqlib | 0 | {bio-dev} |
pigx-rnaseq | 0 | {bio,covid-19} |
pilercr | 0 | {bio} |
+ pique | 0 | {bio} |
pplacer | 0 | {bio,covid-19,bio-phylogeny} |
+ python-bcbio-gff | 0 | {bio-dev} |
python-epimodels | 0 | {epi} |
python-seqcluster | 0 | {covid-19,bio-dev} |
q2-sample-classifier | 0 | {bio,bio-dev} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/39c778fc76fad9b454df1dd3164394621ee2997d
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/39c778fc76fad9b454df1dd3164394621ee2997d
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