[med-svn] [Git][med-team/community/helper-scripts][master] automatic update

Andreas Tille (@tille) gitlab at salsa.debian.org
Mon Jun 14 14:42:25 BST 2021



Andreas Tille pushed to branch master at Debian Med / community / helper-scripts


Commits:
d3e03eb8 by Andreas Tille at 2021-06-14T13:42:21+00:00
automatic update

- - - - -


2 changed files:

- debian-med-tests.txt
- outdated_med-packages.txt


Changes:

=====================================
debian-med-tests.txt
=====================================
@@ -1,52 +1,52 @@
-Last-Update: Mon, 14 Jun 2021 01:42:04 +0000
+Last-Update: Mon, 14 Jun 2021 13:42:03 +0000
 
  Source                        | Vote   |     Tasks                                           |                                 Tags                                 
 -------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
  dcmtk                         |    172 | {imaging,covid-19}                                  | 
- orthanc                       |     88 | {practice,imaging,covid-19}                         | 
- orthanc-wsi                   |     46 | {oncology,his,imaging,covid-19,practice,laboratory} | 
+ orthanc                       |     89 | {practice,imaging,covid-19}                         | 
+ orthanc-wsi                   |     47 | {oncology,his,imaging,covid-19,practice,laboratory} | 
  gdcm                          |     40 | {imaging-dev}                                       | 
- dicom3tools                   |     29 | {imaging}                                           | 
- htsjdk                        |     29 | {bio-dev}                                           | 
  amide                         |     28 | {imaging}                                           | 
- openslide                     |     26 | {imaging}                                           | 
- dicomscope                    |     22 | {imaging}                                           | 
+ dicom3tools                   |     28 | {imaging}                                           | 
+ htsjdk                        |     28 | {bio-dev}                                           | 
+ openslide                     |     24 | {imaging}                                           | 
  dcm2niix                      |     20 | {imaging}                                           | 
- gdcm                          |     16 | {imaging,covid-19}                                  | 
- minc-tools                    |     16 | {imaging}                                           | 
+ dicomscope                    |     20 | {imaging}                                           | 
  adun.app                      |     15 | {bio}                                               | 
- invesalius                    |     15 | {imaging}                                           | 
- ngs-sdk                       |     15 | {bio-dev}                                           | 
- odin                          |     14 | {imaging-dev,imaging}                               | 
+ minc-tools                    |     15 | {imaging}                                           | 
+ odin                          |     15 | {imaging-dev,imaging}                               | 
+ gdcm                          |     14 | {imaging,covid-19}                                  | 
+ invesalius                    |     14 | {imaging}                                           | 
+ ngs-sdk                       |     14 | {bio-dev}                                           | 
  gnumed-server                 |     13 | {covid-19,practice}                                 | 
  dicomnifti                    |     12 | {imaging}                                           | 
  gdcm                          |     12 | {imaging-dev}                                       | 
+ insighttoolkit4               |     12 | {imaging-dev}                                       | 
  nifticlib                     |     12 | {imaging}                                           | 
  orthanc-webviewer             |     12 | {imaging}                                           | 
- insighttoolkit4               |     11 | {imaging-dev}                                       | 
- pixelmed                      |     11 | {imaging}                                           | 
- plastimatch                   |     10 | {imaging}                                           | 
- ngs-sdk                       |      9 | {bio-dev}                                           | 
+ pixelmed                      |     10 | {imaging}                                           | 
+ plastimatch                   |      9 | {imaging}                                           | 
  ea-utils                      |      8 | {bio}                                               | 
  melting                       |      8 | {cloud,bio}                                         | 
- mia                           |      8 | {imaging}                                           | 
- nifti2dicom                   |      8 | {imaging}                                           | 
- king                          |      7 | {imaging,typesetting}                               | 
+ ngs-sdk                       |      8 | {bio-dev}                                           | 
  librg-utils-perl              |      7 | {bio}                                               | 
+ mia                           |      7 | {imaging}                                           | 
  ngs-sdk                       |      7 | {bio-dev}                                           | 
  nifti2dicom                   |      7 | {imaging}                                           | 
  runcircos-gui                 |      7 | {bio}                                               | 
  salmon                        |      7 | {covid-19,bio}                                      | 
- staden                        |      7 | {bio}                                               | 
  biojava-live                  |      6 | {bio-dev}                                           | 
  jebl2                         |      6 | {bio-dev}                                           | 
+ king                          |      6 | {imaging,typesetting}                               | 
+ nifti2dicom                   |      6 | {imaging}                                           | 
+ openslide                     |      6 | {imaging-dev}                                       | 
  stacks                        |      6 | {bio}                                               | 
+ staden                        |      6 | {bio}                                               | 
  treeview                      |      6 | {bio-phylogeny,bio}                                 | 
  bio-tradis                    |      5 | {bio-dev,bio}                                       | 
  busco                         |      5 | {covid-19,bio}                                      | 
  lagan                         |      5 | {bio}                                               | 
  obitools                      |      5 | {bio}                                               | 
- openslide                     |      5 | {imaging-dev}                                       | 
  orthanc-dicomweb              |      5 | {imaging,covid-19}                                  | 
  saint                         |      5 | {bio}                                               | 
  salmid                        |      5 | {bio}                                               | 
@@ -69,14 +69,12 @@ Last-Update: Mon, 14 Jun 2021 01:42:04 +0000
  libdivsufsort                 |      4 | {bio-dev}                                           | 
  libminc                       |      4 | {imaging-dev}                                       | 
  libncl                        |      4 | {bio}                                               | 
- libpal-java                   |      4 | {bio-dev}                                           | 
  orthanc-postgresql            |      4 | {imaging}                                           | 
  phast                         |      4 | {bio}                                               | 
  phyutility                    |      4 | {cloud,bio}                                         | 
  piler                         |      4 | {bio}                                               | 
  placnet                       |      4 | {bio}                                               | 
  prime-phylo                   |      4 | {cloud,bio}                                         | 
- pymia                         |      4 | {imaging-dev}                                       | 
  quorum                        |      4 | {bio}                                               | 
  rdp-alignment                 |      4 | {bio}                                               | 
  sibsim4                       |      4 | {cloud,bio}                                         | 
@@ -99,6 +97,7 @@ Last-Update: Mon, 14 Jun 2021 01:42:04 +0000
  ghmm                          |      3 | {bio}                                               | 
  ipig                          |      3 | {bio}                                               | 
  jmodeltest                    |      3 | {bio,bio-phylogeny}                                 | 
+ libpal-java                   |      3 | {bio-dev}                                           | 
  librdp-taxonomy-tree-java     |      3 | {bio-dev}                                           | 
  libsbml                       |      3 | {bio-dev}                                           | 
  logol                         |      3 | {bio}                                               | 
@@ -112,6 +111,7 @@ Last-Update: Mon, 14 Jun 2021 01:42:04 +0000
  pbdagcon                      |      3 | {bio}                                               | 
  perm                          |      3 | {bio,cloud}                                         | 
  proalign                      |      3 | {bio-phylogeny,bio}                                 | 
+ pymia                         |      3 | {imaging-dev}                                       | 
  rambo-k                       |      3 | {bio}                                               | 
  rdp-classifier                |      3 | {bio}                                               | 
  rtax                          |      3 | {cloud,bio}                                         | 
@@ -129,7 +129,6 @@ Last-Update: Mon, 14 Jun 2021 01:42:04 +0000
  hinge                         |      2 | {bio}                                               | 
  metaphlan2                    |      2 | {bio}                                               | 
  nifticlib                     |      2 | {imaging-dev}                                       | 
- opencfu                       |      2 | {laboratory}                                        | 
  orthanc-gdcm                  |      2 | {imaging}                                           | 
  papyrus                       |      2 | {imaging-dev}                                       | 
  plasmidseeker                 |      2 | {bio}                                               | 
@@ -140,7 +139,6 @@ Last-Update: Mon, 14 Jun 2021 01:42:04 +0000
  sift                          |      2 | {bio}                                               | 
  atropos                       |      1 | {bio}                                               | 
  cat-bat                       |      1 | {bio,covid-19}                                      | 
- eegdev                        |      1 | {imaging-dev}                                       | 
  htscodecs                     |      1 | {covid-19,bio-dev}                                  | 
  intake                        |      1 | {bio-dev,bio}                                       | 
  kmerresistance                |      1 | {bio}                                               | 
@@ -150,6 +148,7 @@ Last-Update: Mon, 14 Jun 2021 01:42:04 +0000
  libmuscle                     |      1 | {bio-dev}                                           | 
  libvistaio                    |      1 | {imaging-dev}                                       | 
  nanosv                        |      1 | {covid-19,bio}                                      | 
+ opencfu                       |      1 | {laboratory}                                        | 
  orthanc-python                |      1 | {covid-19}                                          | 
  parallel-fastq-dump           |      1 | {covid-19}                                          | 
  plasmidid                     |      1 | {covid-19,bio}                                      | 
@@ -173,6 +172,7 @@ Last-Update: Mon, 14 Jun 2021 01:42:04 +0000
  ctn                           |      0 | {imaging-dev}                                       | 
  cufflinks                     |      0 | {bio,cloud}                                         | 
  dextractor                    |      0 | {covid-19,bio}                                      | 
+ eegdev                        |      0 | {imaging-dev}                                       | 
  emmax                         |      0 | {bio}                                               | 
  fis-gtm                       |      0 | {his}                                               | 
  gatb-core                     |      0 | {bio-dev}                                           | 


=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/d3e03eb8937d6d74ff3a422665b8c31f59ceb354

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View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/d3e03eb8937d6d74ff3a422665b8c31f59ceb354
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