Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
19aa5d0f by Andreas Tille at 2021-06-17T13:42:20+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,73 +1,79 @@
-Last-Update: Thu, 17 Jun 2021 01:42:03 +0000
+Last-Update: Thu, 17 Jun 2021 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 172 | {imaging,covid-19} |
- orthanc | 90 | {practice,imaging,covid-19} |
- orthanc-wsi | 47 | {oncology,his,imaging,covid-19,practice,laboratory} |
- gdcm | 41 | {imaging-dev} |
+ dcmtk | 173 | {covid-19,imaging} |
+ orthanc | 90 | {imaging,covid-19,practice} |
+ orthanc-wsi | 47 | {oncology,laboratory,imaging,covid-19,his,practice} |
+ gdcm | 42 | {imaging-dev} |
htsjdk | 32 | {bio-dev} |
amide | 27 | {imaging} |
- dicom3tools | 27 | {imaging} |
+ dicom3tools | 26 | {imaging} |
openslide | 25 | {imaging} |
- dicomscope | 21 | {imaging} |
dcm2niix | 19 | {imaging} |
- adun.app | 16 | {bio} |
- ngs-sdk | 15 | {bio-dev} |
- odin | 15 | {imaging-dev,imaging} |
- gdcm | 14 | {imaging,covid-19} |
- invesalius | 14 | {imaging} |
+ dicomscope | 19 | {imaging} |
+ adun.app | 17 | {bio} |
+ ngs-sdk | 16 | {bio-dev} |
+ odin | 16 | {imaging,imaging-dev} |
+ invesalius | 15 | {imaging} |
+ gdcm | 14 | {covid-19,imaging} |
minc-tools | 14 | {imaging} |
- gnumed-server | 13 | {covid-19,practice} |
+ gnumed-server | 13 | {practice,covid-19} |
insighttoolkit4 | 13 | {imaging-dev} |
dicomnifti | 12 | {imaging} |
orthanc-webviewer | 12 | {imaging} |
gdcm | 11 | {imaging-dev} |
nifticlib | 11 | {imaging} |
pixelmed | 10 | {imaging} |
- ngs-sdk | 9 | {bio-dev} |
plastimatch | 9 | {imaging} |
ea-utils | 8 | {bio} |
melting | 8 | {cloud,bio} |
+ ngs-sdk | 8 | {bio-dev} |
salmon | 8 | {covid-19,bio} |
+ biojava-live | 7 | {bio-dev} |
+ jebl2 | 7 | {bio-dev} |
librg-utils-perl | 7 | {bio} |
mia | 7 | {imaging} |
runcircos-gui | 7 | {bio} |
- biojava-live | 6 | {bio-dev} |
- jebl2 | 6 | {bio-dev} |
- king | 6 | {imaging,typesetting} |
+ staden | 7 | {bio} |
+ bio-tradis | 6 | {bio,bio-dev} |
+ king | 6 | {typesetting,imaging} |
ngs-sdk | 6 | {bio-dev} |
nifti2dicom | 6 | {imaging} |
openslide | 6 | {imaging-dev} |
- stacks | 6 | {bio} |
- staden | 6 | {bio} |
- treeview | 6 | {bio-phylogeny,bio} |
- bio-tradis | 5 | {bio-dev,bio} |
- busco | 5 | {covid-19,bio} |
+ treeview | 6 | {bio,bio-phylogeny} |
+ bitseq | 5 | {bio} |
+ blasr | 5 | {bio,bio-ngs} |
+ brig | 5 | {bio} |
+ busco | 5 | {bio,covid-19} |
+ embassy-domainatrix | 5 | {cloud,bio} |
+ embassy-domalign | 5 | {cloud,bio} |
lagan | 5 | {bio} |
obitools | 5 | {bio} |
- orthanc-dicomweb | 5 | {imaging,covid-19} |
+ orthanc-dicomweb | 5 | {covid-19,imaging} |
saint | 5 | {bio} |
salmid | 5 | {bio} |
spread-phy | 5 | {bio,bio-phylogeny} |
- anfo | 4 | {cloud,bio} |
- arden | 4 | {cloud,bio} |
+ stacks | 5 | {bio} |
+ anfo | 4 | {bio,cloud} |
+ arden | 4 | {bio,cloud} |
assemblytics | 4 | {bio} |
- bamkit | 4 | {bio,covid-19} |
+ bamkit | 4 | {covid-19,bio} |
beast-mcmc | 4 | {bio-phylogeny,bio} |
- bitseq | 4 | {bio} |
- blasr | 4 | {bio,bio-ngs} |
- brig | 4 | {bio} |
+ canu | 4 | {bio} |
dicompyler | 4 | {oncology} |
elastix | 4 | {imaging} |
- embassy-domainatrix | 4 | {cloud,bio} |
- embassy-domalign | 4 | {cloud,bio} |
+ embassy-domsearch | 4 | {cloud,bio} |
+ emboss-explorer | 4 | {bio} |
+ gatb-core | 4 | {bio} |
getdata | 4 | {bio} |
jellyfish1 | 4 | {bio} |
lamarc | 4 | {bio} |
libdivsufsort | 4 | {bio-dev} |
libminc | 4 | {imaging-dev} |
libncl | 4 | {bio} |
+ librdp-taxonomy-tree-java | 4 | {bio-dev} |
+ mhap | 4 | {bio,bio-ngs} |
orthanc-postgresql | 4 | {imaging} |
phast | 4 | {bio} |
phyutility | 4 | {cloud,bio} |
@@ -76,8 +82,9 @@ Last-Update: Thu, 17 Jun 2021 01:42:03 +0000
prime-phylo | 4 | {cloud,bio} |
quorum | 4 | {bio} |
rdp-alignment | 4 | {bio} |
+ rdp-classifier | 4 | {bio} |
sambamba | 4 | {bio} |
- sibsim4 | 4 | {cloud,bio} |
+ sibsim4 | 4 | {bio,cloud} |
sight | 4 | {imaging} |
spaced | 4 | {bio} |
tracetuner | 4 | {bio} |
@@ -85,38 +92,31 @@ Last-Update: Thu, 17 Jun 2021 01:42:03 +0000
zalign | 4 | {cloud,bio} |
bart-view | 3 | {imaging} |
biomaj3-cli | 3 | {cloud} |
- canu | 3 | {bio} |
clonalframeml | 3 | {covid-19,bio} |
clonalorigin | 3 | {bio} |
ecopcr | 3 | {bio} |
- embassy-domsearch | 3 | {cloud,bio} |
- emboss-explorer | 3 | {bio} |
estscan | 3 | {bio} |
fastml | 3 | {bio} |
fsm-lite | 3 | {bio} |
- gatb-core | 3 | {bio} |
ghmm | 3 | {bio} |
ipig | 3 | {bio} |
- jmodeltest | 3 | {bio,bio-phylogeny} |
+ jmodeltest | 3 | {bio-phylogeny,bio} |
libpal-java | 3 | {bio-dev} |
- librdp-taxonomy-tree-java | 3 | {bio-dev} |
libsbml | 3 | {bio-dev} |
logol | 3 | {bio} |
mauve-aligner | 3 | {bio} |
- mhap | 3 | {bio-ngs,bio} |
microbegps | 3 | {bio} |
nifticlib | 3 | {imaging-dev} |
- nipype | 3 | {imaging,imaging-dev} |
+ nipype | 3 | {imaging-dev,imaging} |
orthanc-mysql | 3 | {imaging} |
- oscar | 3 | {tools,practice,data} |
- paraclu | 3 | {cloud,bio} |
+ oscar | 3 | {tools,data,practice} |
+ paraclu | 3 | {bio,cloud} |
pbdagcon | 3 | {bio} |
perm | 3 | {bio,cloud} |
- proalign | 3 | {bio-phylogeny,bio} |
+ proalign | 3 | {bio,bio-phylogeny} |
pymia | 3 | {imaging-dev} |
rambo-k | 3 | {bio} |
- rdp-classifier | 3 | {bio} |
- rtax | 3 | {cloud,bio} |
+ rtax | 3 | {bio,cloud} |
sga | 3 | {bio} |
soapaligner | 3 | {bio} |
soapsnp | 3 | {bio} |
@@ -125,7 +125,7 @@ Last-Update: Thu, 17 Jun 2021 01:42:03 +0000
surankco | 3 | {bio} |
tvc | 3 | {bio} |
blimps | 2 | {bio} |
- delly | 2 | {covid-19,bio} |
+ delly | 2 | {bio,covid-19} |
hinge | 2 | {bio} |
metaphlan2 | 2 | {bio} |
orthanc-gdcm | 2 | {imaging} |
@@ -139,7 +139,7 @@ Last-Update: Thu, 17 Jun 2021 01:42:03 +0000
atropos | 1 | {bio} |
cat-bat | 1 | {bio,covid-19} |
htscodecs | 1 | {covid-19,bio-dev} |
- intake | 1 | {bio-dev,bio} |
+ intake | 1 | {bio,bio-dev} |
kmerresistance | 1 | {bio} |
libbio-mage-utils-perl | 1 | {bio-dev} |
libchado-perl | 1 | {bio-dev} |
@@ -150,7 +150,7 @@ Last-Update: Thu, 17 Jun 2021 01:42:03 +0000
opencfu | 1 | {laboratory} |
orthanc-python | 1 | {covid-19} |
parallel-fastq-dump | 1 | {covid-19} |
- plasmidid | 1 | {covid-19,bio} |
+ plasmidid | 1 | {bio,covid-19} |
python-wdlparse | 1 | {bio-dev} |
samtools-legacy | 1 | {bio-dev} |
simpleitk | 1 | {imaging-dev} |
@@ -190,8 +190,9 @@ Last-Update: Thu, 17 Jun 2021 01:42:03 +0000
libgenome | 0 | {bio-dev} |
libgkarrays | 0 | {bio-dev} |
libhmsbeagle | 0 | {bio-dev} |
- libics | 0 | {covid-19,imaging-dev} |
+ libics | 0 | {imaging-dev,covid-19} |
libjloda-java | 0 | {bio-dev} |
+ libmaus2 | 0 | {bio-dev,covid-19} |
libmems | 0 | {bio-dev} |
libmialm | 0 | {imaging-dev} |
libncl | 0 | {bio-dev} |
@@ -211,14 +212,14 @@ Last-Update: Thu, 17 Jun 2021 01:42:03 +0000
orthanc-imagej | 0 | {imaging} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
- pigx-rnaseq | 0 | {bio,covid-19} |
+ pigx-rnaseq | 0 | {covid-19,bio} |
pilercr | 0 | {bio} |
pique | 0 | {bio} |
- pplacer | 0 | {bio,covid-19,bio-phylogeny} |
+ pplacer | 0 | {covid-19,bio,bio-phylogeny} |
python-bcbio-gff | 0 | {bio-dev} |
python-epimodels | 0 | {epi} |
- python-seqcluster | 0 | {covid-19,bio-dev} |
- q2-sample-classifier | 0 | {bio,bio-dev} |
+ python-seqcluster | 0 | {bio-dev,covid-19} |
+ q2-sample-classifier | 0 | {bio-dev,bio} |
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
@@ -232,8 +233,7 @@ Last-Update: Thu, 17 Jun 2021 01:42:03 +0000
trace2dbest | 0 | {bio} |
varna | 0 | {bio} |
xdffileio | 0 | {imaging-dev} |
- yanagiba | 0 | {covid-19,bio} |
- libmaus2 | -1 | {bio-dev,covid-19} |
+ yanagiba | 0 | {bio,covid-19} |
mssstest | -1 | {tools} |
python-seqcluster | -1 | {bio} |
sight | -1 | {imaging-dev} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/19aa5d0f0b57d8dbf18491e5570156f6b2704f0e
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/19aa5d0f0b57d8dbf18491e5570156f6b2704f0e
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