[med-svn] [Git][med-team/pilercr][master] Update test data and copyright
Shruti Sridhar (@shruti_sridhar)
gitlab at salsa.debian.org
Thu Jun 17 16:24:23 BST 2021
Shruti Sridhar pushed to branch master at Debian Med / pilercr
Commits:
16e31bad by Shruti Sridhar at 2021-06-17T20:52:07+05:30
Update test data and copyright
- - - - -
4 changed files:
- debian/README.test
- debian/copyright
- debian/tests/data/example.fasta
- debian/tests/run-unit-test
Changes:
=====================================
debian/README.test
=====================================
@@ -10,5 +10,6 @@ in order to confirm its integrity.
Notes on the files used for testing
────────────────────────────────────────
Files: debian/tests/data/*
-https://github.com/dcouvin/CRISPRCasFinder/blob/master/install_test/sequence.fasta
+Source: https://www.ncbi.nlm.nih.gov/nuccore/CP014688.1?report=fasta&to=39760
+First 175 lines of the fasta file have been taken for the test
\ No newline at end of file
=====================================
debian/copyright
=====================================
@@ -37,21 +37,5 @@ License: GPL-2+
Public License version 2 can be found in "/usr/share/common-licenses/GPL-2".
Files : debian/tests/data/*
-Copyright: 2017 CRISPR-Cas++ team (CNRS, Université Paris-Saclay, Institut Pasteur, Université de Lille)
-License: GPL-3
- This library is free software; you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by the
- Free Software Foundation; either version 3 of the License, or (at your
- option) any later version.
- .
- This library is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
- .
- You should have received a copy of the GNU General Public
- License along with this library; if not, write to the
- Free Software Foundation, Inc..
- .
- See /usr/share/common-licenses/GPL-3 on your debian system.
-Comment: The file has been outsourced from https://github.com/dcouvin/CRISPRCasFinder/blob/master/install_test/sequence.fasta and modified for testing
+Copyright: NCBI
+License: public-domain
=====================================
debian/tests/data/example.fasta
=====================================
@@ -1,120 +1,175 @@
->example_1
-CGAGAGCTCCTCCCCCCTGACGAGGGAGGCCGAGGTTACCCTGTACTCCAGGGCCCCGGGGCCCAAGCTC
-ACGCTGCCCTCGCAGGAGGCCAGCTGGGCCACCTGGGGCGCGGAGAGCGACGAGGCGACTGCCACCACGG
-CGCCCCTGAGCCTCTCGCCCTTCCTCACCACGATGGGCCTGTCGCCCTGGGAGTAGAGCCTCCTGCCGCT
-GCCGTCCGCGAGGGACCTGAAGGTCACCGCCTCCCTGTGGGCCAGGTAAAGCTCCCAGAGGGGGTGAAGG
-GTTTCAACACCATTCCTTGGTTTCCCATTGGTAAATGAGATTGTGGTTACGCATCCAGAGCATAAGTTTC
-AACACCATTCCTTGGTTTCGCCGTTGAAGTAGTCCTCGTCGTCGTGCACCACCTCCTCCAGTTTCAACAC
-CATTCCTTGGTTTCTGATTGTAACTGGGGCGCTGACAGGGTACATGTAGGTGGTTTCAACACCATTCCTT
-GGTTTCACGTGCCCTATGGAACGCTGAAGGTATACCTATCAAGGTCAAGTTTCAACGCCATTCCTTGGTT
-TCGCCAGAGTGTCAATTAACTCCCCCAACGTAAGCGGAGGGCGTTTCAACACCATTCCTTGGTTTCATCT
-CCTTCTTGTCCCTGCCCAGGTACGCAATTATGGTTTCAACACCATTCCTTGGTTTCTTATGTCATACTCC
-TTTGCTGCCTCGTGGAGCTGTCCTGCTAGTTTCAACACCATTCCTTGGTTTCTAGAGGACTTTCTTAACA
-ACGCCATTGATATCCTTGTAATCAGGTTTCAACACCATTCCTTGGTTTCTAGAGCATATAAAGGAGGAAG
-ATATCGAGAAGTTCCTGTTTCAACACCATTCCTTGGTTTCGCCAAGCACAAGCGACAACCCTAACCGCCC
-CCATGTGTTTCAACACCATTCCTTGGTTTCCAAGAGAAGTTTTATTTGACGCAGTAGACAACAAGGAAAG
-AGGTTTCAACACCATTCCTTGGTTTCGCGTAGACCTGGAAGCGGTACTCTGCGTAGACAAGGGTTTCAAC
-ACCATTCCTTGGTTTCACATTTTGTTTAGGCAGAGGACAGCAAATTTAACAGTGTTTCAACACCATTCCT
-TGGTTTCTAAATAACTCTCTCGTTCTCGTCTACCTCATAACGGTCGTTCCTAAGTTTCAACACCATTCCT
-TGGTTTCCAAGTTTGTTCAGAAAATTGCCTTGAAAGATTCAAGCTATTTCTGTTTCAACACCATTCCTTG
-GTTTCTCGGAAAGAGAGGAAAGAAGGGAAAGGGGTAACGTTGTTAAGTTTCAACACCATTCCTTGGTTTC
-CGAGCCCTGAGCTGTTATGCTTGTCCCTGTCCTCCGCGCGGCCTGGGGCCTGCCCTTCCCCCGCTCCTCT
-GTCCCACTGTTGTCCTCTGCTGGGAAATACTTAAGTTTACCGCCGGCCCCCGGGGGACTTCCCATGTGAA
-ACGTGGGAATTACCCGGCTAAGTAGTTTATAAGGTAAATTAACAAAATAATCAAAACTGCTGCCTAGTGG
->example_2
-AAGGCAGCGTCTGGCCTCAGCCACGGCATGAGGAGGAGCCTCAGTCCCATGCGGGGCACACCCTCCTGAA
-CCAGCAGGAGCTGCACCTCTCAGACCTGTACGCCCTTGGGGGCTCCTCCGACTCAAGTACGTCCCTGACC
-CTGGCCACGAGCTCCTCCGCCTCCCTGAGGACGTGGCCGTCAACCTCAAGGGCGAGGAGGTCGCCCCCGT
-GGTACAGGTAGGCCTCCCTGACCCTGCCCAGGAGCCTGTTGGCCAGCAGGGCGTAGAACTTGAGCTGGTT
-CGCGAAGGGCCTCAGCCTCTCCCCGGCGGCCCTGAAGGCCTTGACCTCGAGGACCCGCAGCCTCCCGCTC
-CCGGAGACCAGGTCAACGACCCCGGCCGCCCCAAGCCCCCTGTCCCTCAGGGGCACCTCCTCAAGCCAGG
-GGTTTCAACACAATCTTATGGTTTCAGTGTCGAGGATATGTTATAAGCATAGATTTCCTCTTGTTACAAC
-ACCATCTCGTGGTTTCGCGGATGTATCACCTAAAGCCGAAGTTTGTGATAAGGGTTACAACACCATCTCG
-TGGTTTCTGGATTACTTGCGGCAAACATACTTAGTTTCTACTCTTTGTTACAACACCATCTCGTGGTTTC
-CCGAGTATGTTCACGTCCTCTGCCTCAGAAAGGCCGAGCCTTTGTTACAACACCATCTCGTGGTTTCGCA
-GGCTCTGGAAGGCCATACTGTCCCTACAGAACCCAGACGTTACAACACCATCTCGTGGTTTCTTTCTATC
-TGAGGCGTGAGAGCATGGGTGAGAGGGTTTCTCGTTACAACACCATCTCGTGGTTTCGAAGTTTAAGCTA
-TTCTTGCTAACACATATCAATCAACTCAAGTTACAACACCATCTCGTGGTTTCAGTTTTTATGAAAAAAT
-CCTTAAAGAACTTGGCCTTTCTTGTTACAACACCATCTCGTGGTTTCGCGTTTATTCACGCGACCTGGGG
-CAGCGCAACAGTGGAAGAGTTACAACACCATCTCGTGGTTTCGCGTCTTTCTTTATAATTGACCATTCAT
-GAATTTTGTTTTGTTACAACACCATCTCGTGGTTTCGTTGTATACGATAACTACGGGTTCTGGGTCCATC
-CAACCTTGTTACAACACCATCTCGTGGTTTCTACAAACACGTTTGCCTGTTTGAAGAAGCTGGGCCTTAT
-AGGTTACAACACCATCTCGTGGTTTCGTCTCAGAATGAAAGCTCGGAGGGGACTCCCCAGACTCGTTACA
-ACACCATCTCGTGGTTTCCGAGAGACGTGAGCGAGGTGAGGAATGTGGAGAGCGAGTTGGGTTACAACAC
-CATCTCGTGGTTTCACGGGGAAAGAAACCATCACCGGAACGGTAGTAGGGGGGAATGAGTTACAACACCA
-TCTCGTGGTTTCGGCTGTTCAGTGCCTGCAGGAGCACCCAGAGTACTTGGGTTACAACACCATCTCGTGG
-TTTCGAGGTGCTAAAGAACGGGTTCACATCTGTCGTGGGCCACCCGTTACAACACCATCTCGTGGTTTCA
-GGAAGTTCAGTTCGTTGAACTTCTACGACATAATCTTTTGTTACAACACCATCTCGTGGTTTCTAGCCGT
-TCGGGATTGACGTGGAACGGCTGCGCTCTTATGGGGTTACAACACCATCTCGTGGTTTCATTACATCTCA
-AGATCAGGGCTAACATGGAGCGGTTGGTTACAACACCATCTCGTGGTTTCTATTCATTATGGACAAAGCG
-GTTCAATGTTTACAACAACACCCGTTACAACACCATCTCGTGGTTTCTCGTATGGGTCTTTTTTGGGCTC
-TACGCATGTTTGGAAAGTTACAACACCATCTCGTGGTTTCTCAGCGCTACAAACATGTCCTTCCCAGCTG
-GCTACATAGGTTACAACACCATCTCGTGGTTTCTAGCTCTTTTTCTTCGCCTTGCCCCATGGCCCCATGG
-CCGTTACAACACCATCTCGTGGTTTCTATCAGGAGGTTGCCATCAGCATTTGTTCTGGCTGGGGCTAGGT
-TACAACACCATCTCGTGGTTTCCGAGCCATGGGACGCCGTGCCTCGGCCTTAGCCTTCACGTGGCCCGGG
-GCGGCCCTCCTGTCCCACCACTGTTTTCTGCAGGGGAATACTTAAGCCTACTGCCCGCCCTGCGGCCGCT
-TCCCATGTGAAACATGGGAAGTCGCCATAGGCCTTTAAATTTTCATAATGTTTAGTTAAGTAAAATTGAT
-GTTCCCACCGCTCCCACCGGGCAAGGCACTCCCATGTCTCACATGGGAAATACCCGGCTAAGTAGTTTAT
-AAGGTAAAATAACAAAATAACATGTTAATCATTATGAAAGGAGGATCCTGTGACTCTATGCTAGACACGG
-CTAGCAGGCTCGGGACAGCGACGACGGCCCTGTACCTCAGCTCGGGGGCCACGCCGAGGGTCAGGCACCG
-ACCACCGCTACAGCCCTACGATTTTGGATGGAACCACAGGCCGCAGGGCCTCTTGAGTGGTATTTGTTGA
-GGGCCTGCGCGTGGAGGAAGTCCCCAAGTCCTAGGACTCAGGAGGACGCCGTACATGGAGCTCGTGTGGA
->Acidilobus_saccharovorans_CR3
-GAACCCCAGCGTCACCGGGACCGCCAGCGAGAGGGCCGAGGCGGCCCCTTGGACGGCCCTCACAGTCATT
-ACCTGGAGCTGGTTGGGGGCGTTAGTCACGTCTGAGACCACGTAAACAGCGTCATAGTCGGCGGCCCTGA
-GCTCCAGCAGCTTCCTTGAGATGTGATAGGCCGCCATGGCCTGGGAGTCATAGGGGCTGACGTCTATCCT
-CATGGAGCCGCCCCCGCTGAGCCTGAAGGTGCCCCTCAGCGGCACGGCCCTGAGCTCCAGGTTATCCTCC
-TTAAACTATTTTATAAACATTATAAACAGTGTTATGCTTTTGTTATTTTGTTAATTTACCTTATAAACTA
-CTTAGCCGGGTAATTCCCATGTGAGACATGGGAAGTCACTTGCCCGGTGGGAGCGGTGGGAACATCAATT
-TTACTTAACTAAACATTATGAAAATTTAAAGGCCTATGGGGGCTTCCCATGTTCCACGTGGGAAGCTGCC
-CTGGAGCCGGCGGTAAACTTAAGTATTCCCGTGCAGAGGACAACGGTGGGACAGAGGGGCAGAGGAAGGG
-GCAGGCCCCTGGCACGGTAAGCGAACATAACCTGTATGGTGTCCCAGAGCTCGGAAACCAAGGAATGGTG
-TTGAAACTCTCTAAATACAATCGGCTTCTGATCCTTGGTAAATGCGAAACCAAGGAATGGTGTTGAAACC
-CTCATGTTCATTGGGATATAAATTGACAACTATCCACGGGAAACCAAGGAATGGTGTTGAAACGCTTCAT
-GCCGATAAGGCCGGCTGACCTAAATTGGTTAAGAAGAAACCAAGGAATGGTGTTGAAACCATAGAAAGAT
-AGTTTCAGGGGTTTAAATTTCCATAGGTTCAGGAAACCAAGGAATGGTGTTGAAACTGACGTTAGCGTGA
-ACGGGGACAGGATAAGCATAACTATAAGAAACCAAGGAATGGTGTTGAAACACTAGAACTTTATCCATGT
-CCACAAACCATGTTATGGCCGAAACCAAGGAATGGTGTTGAAACCGAGAAACCAATTAACTTAGACGCAT
-ACAAAAAGATAATTAACGAGTCAAGAAACCAAGGAATGGTGTTGAAACTAAGTATCTTCAAAGCCCTTAT
-AAAACTTGCTACCCTCTTGAAGAAACCAAGGAATGGTGTTGAAACACGCAATCATAGCCTTTGATGTTAT
-CGCCACAGCTAACTAGAAACCAAGGAATGGTGTTGAAACCCTCCACTGGCCTGTAGGTATAGTTTGCGAA
-GTGGTATGCGAAACCAAGGAATGGTGTTGAAACCAAAAGTCCGTGTGGTCTTCCCCCTCAAAATCGAAAT
-ATTGCGAAACCAAGGAATGGTGTTGAAACTCTGCACAGTGCACACTGAACCTGTTGGCCTTTCCGCCAGA
-AACCAAGGAATGGTGTTGAAACTCTGAACAAACTTGCGGGTTTAACATTAACGAGAAATACGACAGTGAA
-TAATAATATGAAACCAAGGAATGGTGTTGAAACCTGCTATTATTTCGCTTGCATAATCTGTTGGCATACC
-CCTGTGGGAAACCAAGGAATGGTGTTGAAACATCAGCGTAAGCTGTTCATACTTCCTCTGTGCAATTACA
-GTCGAAACCAAGGAATGGTGTTGAAACACTTTCCACTCATATCTATTCTGAACGTCAACAATATACAGAA
-ACCAAGGAATGGTGTTGAAACAGGTTATACTGCCCCCAGCGGCTTCGGCCTCCCCAGCGAAACCAAGGAA
-TGGTGTTGAAACCCATAGGGGAAGCTCCACTTCTTTCACAAACTCTGCGGAAACCAAGGAATGGTGTTGA
-AACGCAGCTTTGCCAGTTCTCCCTCAATAGTGTATTCATATGAAACCAAGGAATGGTGTTGAAACTTTAT
-GATATTAACGGTAGGCGCCGTGAGGACTATAGAAACCAAGGAATGGTGTTGAAACCTTGCTATCACGTCC
-CTAACGTTCATGCCCCTGGTCTTGAAACCAAGGAATGGTGTTGAAACTGGGGCCATTCTCTGCTATCTCA
-TACACTTCTTTCATATGAAACCAAGGAATGGTGTTGAAACACTTGACCTCGTAATGATATTCGTGGTCGG
-CATAGTGGGCTAGAAACCAAGGAATGGTGTTGAAACGCCTTTTCGGCGCTCACTTCCTCTTCCACTGTTG
->Acidilobus_saccharovorans_CR4
-GGCTCCGGCAGCAGCCTGTAGGCGTTTGGGACCCTCCTTGACAGACGCGAGGCCCAGGGCGGGGTCATGA
-CCTTGAGCGGTATCGCTGTCGGCGTGAGGAACAAGAGCCTCACGGCCCCTCCCCTCCCGCCCAGGCCCAC
-CGAGAGCTCCTCCCCCCTGACGAGGGAGGCCGAGGTTACCCTGTACTCCAGGGCCCCGGGGCCCAAGCTC
-TGCCGCTGTAAAGGAGTCGTTTACGTCATACACCTTTGCAGTCAGAACTTCCTCTTCCACTGTTGTGCCG
-CCGAAACCAAGGAATGGTGTTGAAACGTAGGGACCAGTAATGACCGTGCTTCAGGGAGGAATAGGAGGAA
-ACGAAACCAAGGAATGGTGTTGAAACAGTTCTTCAAACATCGCAAAAATAGCTGAGGAAAACGTGAAACC
-AAGGAATGGTGTTGAAACTTTATATAAAACCTGGTGAACTACATGGCTACTCGTAAGCTTCTGAAACCAA
-GGAATGGTGTTGAAACATCCTAATGACGTCCATTGGCACTCCAGGGACTTCCTCAAGAAACCAAGGAATG
-GTGTTGAAACTAGATATTTGGGCTCACGAAAATCTTTCTGTCATGAAGTAGAAACCAAGGAATGGTGTTG
-AAACTGCTGGATGCCGGTAGCGGGCCCCTTGGCACTTCTACGGTAGAACAGAAACCAAGGAATGGTGTTG
-AAACACTACGCCGTGGAGGCAATGTCCTTTGCTCTCGAGAGAAACCAAGGAATGGTGTTGAAACGTCCTC
-ACCAGGCCCACAAGTTCAATTGGTGTTTTAGCGAGAAACCAAGGAATGGTGTTGAAACACTTCCTGCGCG
-CTCACGCTCTCTCGCCTCGCTTTTCTGTGGAAACCAAGGAATGGTGTTGAAACTCTTATTTCTTCGCCGC
-CCCAGGCCGCTACTATTTCCGCGGAAACCAAGGAATGGTGTTGAAACCAGGTGAAACAAAATATAATATG
-TCAATTGCGTTGTTTAGGAAACTAAGGAATGGTGTTGAAACATGCACCACAAGGTAGTATCCTTCGTCGA
-GATACCTACTCGAAACCAAGGAATGGTGTTGAAACTCACTGTTTCCCTCGCACGGGTTGGGTAGATTCCA
-CGGAAACCAAGGAATGGTGTTGAAACTGTGGCAAGCTTTCTCCTTTGCTTTATCTCGCTTATTGTCTTTG
-CGAAACCAAGGAATGGTGTTGAAACATGGCGTTCTGCGCAAGAATGCCGTGCTGTGGTATGTCATAGGAA
-ACTAAGGAATGGTGTTGAAACACCTCCCTCTTCAATTCTTCTTCCAGACTCTCCCCCACCTGGAAACCAA
-GGAATGATGTTGAAACTGGAAAGCGGTTTGTCGAAGAATATGATAAGTATGGCGATGGAAGCCATAGAAT
-GATGTTGAAGTTGAAATTAACTACTACGCCCCTTGCCACGCTGGTGCTCTCAAGGACGCCACAGGGTTTC
-GTCGTGAAGCCGGTCTACGCGTACCAGAGGCTCCTGTGGGCGGTCAAGGCGTTCGCTGACATGCAGATCT
-TTAACTACCTGGAGAACATAATAGCTGCCCAGCGTGGCGGCGAGGGAGCTGGCTTAGTGCACGAGGCGCG
-GCCGAGCCCGTTGGCCCTGGGGGTCCTTGGGGTCATCCCCTGCCTGGCCATTCCTTGAAGCGCCCTTGCC
-GCGGCGTTTATAGCAGCCAGGTATCAGCCGTGGAGCCGCGCTAGGGGTAACAAAGAGCAGTCCAAGCAGC
-
+>CP014688.1:1-39760 Acetobacter persici strain TMW2.1084 plasmid pAC1084_1, complete sequence
+ACGAGGTCGTTTCTGTCGACCCGCTGGCTATATTCAGGCTGGTAGATGTCGGCGTGGTCTGATTATTACC
+ATCACCGCTTGCTGAAGACTGATCCCCGCTGCTGATGATCGGGAGGGCTGACAAATAGTCCCCCTTGTCA
+GTCCGGTCGTCTTCGACACTCCCTACGCTCCCGCTTAGATATACGGCTCCGGTCCCCGTCAGCTTTACGC
+TTTCATTGCCAGTGCCCTCGATTTCTACGCCTCCGACCACATTACTTAGGTCTATTGTAGCGTTATATCC
+ATTCAGGTGGATGATATCGTTCGTACCCTCTGCATCCACAGTGATAAGCACGCCCGTAGGGCTTTCGCTG
+TAACTATCGAGAACCACATTGGAGGTTCCGTCGGAGGGAAGATGGATGGTACTCATTGTCGTAGGAGTGA
+TCGGATCCACCCTTACATAGCTTGGGTCCTCGGCGGAAACAGACACCTCCTTCTGAGCGGGCGCAGTCGG
+CGAGTAGGAGACGTCGGCCTCATCGGAGGAAGTTATTCTGATATCATTCACCTCCATCGTAGCCGTGTAA
+GCAGGATCAGTACTCCCGTATGACGCCCCCTCCGGCCCGATATAAGCTCCTCCAAGAGACCAGTCCGAAA
+GATCCTCATATTCGCTTGCATGCGTGGGGTCATTCCGGGCCAGCCGGGCGATCAAGGAATCAACGGAGGC
+GTTCAAATTGATAGTCACCTGATGGAATGGCTGATCAGTTCCACCATCCAGAGGGAGAGAGTCTTCGACC
+TCTGCTGAGTCGCCATGCCACGTTCCGCTGCTATCCTGATAGACGTAGCTGTTAGAGAGATTGTAAACGC
+CGGAAGACAGGGCCGTGCCGCCCCCAGATGTGGTGGCTAACTGCCCGCGGTCATCCGCCATAACCGCCTG
+CATGAAGTAACCCGCGGCCGGTACATCCGTATATTTCCCGTTCAGGTTAAAGAACACCTGAAAAGCGTTG
+TAGGTGAACCAAGCGCCAGTATCGTTATTGGACTGGACGTTTGTGATCCTTTCATTGGCGGTGAAAGTTA
+TCTGGTGATCGAATGTATCCGCTACTCCGGCCACCTTATTTTTGGTCTGCAGGAAAACATCTGCATTGCT
+TCCGCCGCCCTGTGTGAGTGCATAGGTGTAGCCGTATTTCGTTGAATCGTAGATGGCCAGCTTGCTCGTA
+TTGCCCGGCACGGACTCTTCCCACTCGCCGATAGGCACGCCGCCTAGCAACGAATCAGCATCTGCCGTGT
+CATTTGTATTGACCTCCGATGGCTGGAAGTATCCCGGCGCAGACCATTGAGTGATATCCCACCCTGTATC
+GACCCCTCCTGGGAGGCTCGGCATCACAGAATTGAAGACCTCTTCTGTCCCTGTCACTTCACCCGTATTG
+AAGGCGAGATTTGGTCCGCTTACGCTTGGATCATCGAAAAGGAGTTTTGAGTCTGAATCGTTGGAAGATG
+GTGACATCATTGCAAGCCGGAAGGACGGCCCTTCTAATATTTATAGTCCAATAATATTGTATTAAATCAT
+ATTACGCAGACATTAATAAGGGCGGATAAATATTGATGGTCATAGTTTTTTAAATAATAAACGAATGATG
+AATATTTTAAAATAACGCTGTAATAAAGCAGAAAAAAGAAGAACCGAGTTTCATTGCAAGTTCAAAAAAC
+TCCATCTCCGCTTGGAGAAGTTTTTTTCGTAGTGAAGCGTCGGATGGTTAGAGAGTTGGTTCGTTATCGT
+CCGCGGAGGGAGACCGCTCCTTTGTTTGGATGAATGGCTGGGCGTGGTAGGAAAACTCCCCATCGACGAA
+AGTTTCCCCATCATGCCGGACCAAGCGAAAAACCGTATTCTCCCCGTCGCGCCGGTAGTGGCACCCATCA
+CTGCCCCGCCCCGCAGCAATACGGACGTTCTGGCCATCCTCATTGACAATCCAGTATTCTGATTTATCTC
+GCGTCACCATCAGAATCTCCTATTTCCCTTATTTATTCATAATACCATAGCAATATGCGTTGCAATGGAA
+AATGAGAATTTAACTTTCTCTCGACCCTGAAGGACGTGGTTTGTGACGGATTTTGAAATGGACCATTACA
+CGGGCCGTAGGCAGATAAACCGCTACTGATGGTTTACATGAAATGTAAAAAAACCTAATTTATTTTTGCT
+TAAAATGATTTTTTCTTTTTCTAGGCTTGAATAATGACCAATTATAAAAGCGATTCACAACCGCGACCGG
+AAGCCCACGAAGAATCCGGCAAAATCGTAATTCCACAGCTTATTTTCGCATTCTCTTTGTTTTTGTTCTT
+TATGGTATTTCTTCTCTCGGATGCCTACGCTAGTTTGCGTATTTGGCTGACTTTGGCAGCAATTATTTTA
+TCCTTACTAAGCTTATGTCTCCACTTTTCTGACATCCATATATGGGATGGTTACCTCATGAGACGAAGCC
+GGAGTGCTGAAGCCCTCAGCGATATTGAGCGTGAGTTGCAGTATATTCGAGATTTCATCTCACAGCAGAG
+GCAGGAGCAGGAAAGACAAGAAGATCTTTTTCGGGATTTCTTGCGAGACTTTGAGAGGGATAGAGCAAGT
+GAGCATTCAGAAGGCTTTGAGCGCGCTTCCAAAGGACATCGTGCAAAGGGAACCGCCTACCATCATCAAC
+CGCGGCCCGGATATGAAGTTGCCATGTCCGTTCTTGGTCTCGAACATGGATTTTCTCAGGTCGATCTGAA
+AAAGGCATGGAAAAAGAAAGCCTTTGACACACATCCTGACCACGGCGGCAGTAGCGAAAAATTCCAGGAA
+ATCACTGACGCATACAATTGTCTAAGAGCGTGAGAGCGCAGCATCTTTCCTGTGCTTGAAGATAGAGCGG
+CCGACCAGGCTCTCAGCCCGGTATAACCCCGTTATCATGATGGCAGACAGAAGGTTTCTCTCCGATCTTG
+TCACCTTCACCACCGGAGGCAGGTCGGAAGGAAAGCCTCGTGCGCATAGGTAAGCCGCGGTCACAGGCGG
+CCACCATTTGGCCAGATCATGGTATTTGAAGACGTAATCATCAGAAGAGACAAGGCAAAATGTTGGCTTG
+TCCCTGGATCGGAGCCAGATAGAACGGGCCGCTATCGCTGACGCGAAGTAGCCCTCTTCTTTGGTCTTGG
+AAATACCCTCGCAGATGATCTGAAAGCTCTTTCCGTGCCGCGCTTTCATAAATGCGATCCACTCTTCTGC
+CCTCTGAAAACTGAAAAGCCCTCTCATTTCTTCCGCCCATTCCATGAAAAATGGGTCTTTAGCCCTGGCC
+GATAGAAACCACAATTCAGGGATAGGAAGGTCTGCCTCCGCGGATCCTCTGCAGAAACCGCGAAAAGTCA
+CATTCCTTCGCTGCGAGACCGGAAGAAGAGAGCGGACATCCGCGTTGACAATCGCTGTGGCATCGATCCA
+GACGCCACCATAGCGGGCCAGAAGCTCAATCCTTATGGCATCCGCCGCTATCTGTATTGGCCACATCGCC
+TGCTTATCAAACATGTAGGGGTCAATCCAGTCCGCGACAGTATGCCTGTTAAGAAGGATAATCTCATGAT
+GTGGATTGCTCTCTCGCAAATTTGCAAGACATGCTTTCACCAGTTCAGGGGGATTGTCGTCTGCCCAGAA
+CGTCCATATCCGGCCGGCATCCTCATTCGCCTGAAACTGCTTTGCCGTGGGATACGGCAAGGAAGGACGG
+CGCACGAATGGGAATAACATCGCATAAGCGATGAAACAGCCTGCGGCCTCGGCCATCCTGAAGAGTACCT
+TAGCGGAGGCGGTGCCTGACGTTGCTCTCATGAAGCGATATTCCCTGACGAAGCCGCGCGGAGCGGAGCA
+GAGTATGCACCTTGGCCCCATCGCGATGCGTATTCTAAAAAAATGGGGCAGCGCCCCATTGGCACTGCCC
+CGTCTGTTTTAGTGGGCCAACATCTCTTCCCGCATATAAAACTCCCACAGGCCGCCTGTTCTGAAGACGA
+TCATCTTCTCGGTTCTGGTCAGATCCCTGAACCTTTTCCCGGCCAGCCGCTTTTTCCAGAATGCGGTTTT
+TGCGGGGCGCGCAGGCAAATGCAAAAGATGGCGCAACGCGAAGTATGGAGACCGGATCGCGTCTTCCATG
+GAGAAGCCTTCCGGAATCACCTGATCGAAATGCTCATTCATCTTGCGGGTCGTGAGAAGAACCTGCCCCT
+CCGGGGGCATGTCATGATCACACTCAAACTGGTCCTGCGCCCACCCCATTTTTTCCATCAGAGGAAAACG
+CTGGCTGGTGAACCTGGAAATCACTGGGGCGAAGATCAGCCCCACAACAGGCGGCCCCATCCAGAAGATG
+ATCCAGAACGGGGATATCCCAAGTCGGTGCAGCGCTGCCGGTGTCGCATATGGAAGGATTTGATTCCAGA
+TATACACCGCAAGCAAGATCCCGAACACACTTGAGAGCGAATAGGCAGCAAACGCCTCAGACCAGCTTAC
+TGTCCGCCCTTCCCGGTTTTGTGACCCCCAAACCATCTTTTTCCCTGTGGCCCATTTCACAAGGATGGTG
+TTGACGATGATCATCATCGTGGCTGAGGTGAACCAGCCATTGGCCATAACCAGGAATGATGACCAGATCA
+GTTTGAGCGGGCCACCATAACGATGAAGGTTACGCGTTTTGTAGTGGTAAAGAAGGTTCGCCCCGAGCGG
+CAGGAAGATCATCACGAGAAACAGGCTGAGCACCACAGGACCCAAGGCACTGAACCTGGAAATGATCATT
+TTGGTGCGCAGTGGATGGTGCAGCATATAGGCGAAGCCGACAAAGCTCATGATGAAGAACACCATGCCGA
+TGACAGCGTTGAAATAGTTCAGAGTGGACATCAGCAGGTTGGTCTTGCCGAACATCGTCAGACGCCGGAG
+CATAAAGATGCGCAGCCAGTCCAGTGCGCCATACATCCATCTTGTCTCACGTTTTGCCACGTCAATGATG
+TTGTGAAGCTGATCATCAAAGCTCGGGAAATGATGCATTCTCCAGCATTCATAACCAGCCCCTTCCAGCA
+ACATCGCCTCGATATAATCGTGAGAAGTGGGTTTGCCAGCAGCGAACGGCCCCTTCTTGTTGAAGCGCGG
+AAGATTGCAATGTTCCTGCATCGCCCTGACATTCAGAATGGCGCCATGGCCATAGAATGTTGCCCGGTTC
+AGCCGGTAGTGGTTCTGCGCTGCCGTGCCGATGACAATCCCGATATTGTGCCCGAAGCTTTTGATGCGCC
+CGAAGAGCGTTTTTGAATTCACCTCGTAGCTGATGCCTTGAATGATGCCAATGCGATCATTGCCCTGCAT
+GGTCCGCGCAAGATCGATGGCGGTTTTCCCTGGCATAATGGTATCGGCGTCGAAGACAATCATGAAATCG
+TATGAATTGCCCCAGCGTCGCAGGAAGTCATCCATGTTGCCGACTTTGGCATCACCGTTCACCACGCGGT
+TGCGATAGGCGATCCGCGCGTTAGGGAACATGTCGTTCATCACGTAAACGGCATGCTTTTCCTGCGCGAT
+AACATCCTCTTTGCGACTGTCAGACAGCAGTATCCAGTCGAACTGGTCGATTTCAGGATATTCCTGCATC
+TCGCTCATTGTGGCGGTAACAGAAGCACAGACCCGACGGGCATCCTCATTATAGACCGGCACCACAACAG
+CAACGCGCGTCTCCGGACGAAGCTGAACGGCATAGTTGGTCGGATTCAACGGATCTTTAGACGCAGGACG
+AAGGGCATCCCACAGGCCAAATATCGTTGAAAAGAGGTAAGAGGACGCCACGAAGCCAAGGATTGTTGAC
+ACCGCGATAAGGGGGACGAAAATCCATGGGCTTACATTGTAGACATACATCCACAGCATGGAGAGCATTG
+CGGTTGTAAGCGACAGAGAGGCGGTAAGAATATTCAGGATGATCACGCGCTTTCTTCGAGCGCGATCCAG
+GTCATCCAAAGAGGGCGGCATGCGCACGTCTCCAGAGTAATGTCGTTTCAGAATATGAGGCGCTCTACAA
+GCATCTGCGTATGGTGGTCGTATTGCGTAGGCGGCTCACCGAGTGAGGCCTTGTTGACTGGCGGTGCCCA
+CGCGACTGACGGAGACTGCGCTTTCAGGAGCGCAAGCAAGACATCAATCGTGAGGTCCTCGTCCCGGATA
+TGTTCCGGGATGGATATGCGCGCCTCCTGCGCGATTAGCGCTAGCCTGCCCCCATCATGTGGCCTCCCTA
+CCCTGCGTTGCGGGAGATCAGAAGGACGATCGACAACCTGATACTCGCCGCCGTCATTTCTCAGTTCTAT
+GGCGTCTGAAGAATTTAACACCTTGTCCCCCTAGCAGGCCGCTCTCCACCCCTTCAGAGCAGAGAGCGTG
+CTGGTCAGATTGCCGCGCCCATCATTGCCGGATAAGCGGCGGTCATGATGATACCGACTGCCTGCTGAAG
+CGTCACACTGCGGCTGACTGGGATGTAGACCATATCCCGATCTTCGATAGGGAAGTGCTGGGCAGCCTCC
+ATACCGTCCGGACGATCAAAATTGATGCGATAGATAATCCGCTTATCGTGCTTGAACACGAAGATTGCCC
+GACCTTGTGCGGTTGTGGGGTTCATGTCTCCACCACCAGAGAGAACCTCGGCCAGTGTCGGGGGAGTGTC
+GAACGGAACTGCCGTAGGCGTCTTCCAGCCACCTCCAAGGCAAAGTGCGCGTACGGCGGGCTTATGCTGG
+AGGACAATCCGGTCGCCGGGATGGAGCGGGATCGGCCGCTCAAGAGCGGTTTTCATTGGGATATCGAAGT
+TCTTCCCAGTGCGCACCAGAAGAACATTGTTGACCGAAAGATCACTTCCCGCCTTGCTGGGATCGAAAAC
+CTTGAAGCCTCCGGCTTTGGCGACCGCTTCCGCCAGATCCACGCCACCTTCTGACCAGTTCAGCACGGTT
+GGGGTGTTGACCGCGCCCATGACGACGATGTTCTGGCTCTTATTCTCCTCCACAAGAAGAGAGGCAACGG
+CCTGAGGGAAAAGGCTGATACTTGCATACCGACGTGCGATAGCAGATTCCGCCTGCGCGGGTGTCATATT
+GCGGACACTGACGTTCCCTACGTAAGGCAGATCGACGCGGCCCTGAAGATCAATAGGATAGTGGCCGAAC
+TCCTGTGGTTTAGGGGCTGAAGATACACCCGTCTGGTTGTCAGACGTCTGAGACCACAGTGCCAGTTGAA
+CAATATCGCCGGGAGAAAGGACAATGCGGCTTTGCTCGGGGATAGCCACCTCCGCAATAATCCGCTGAAG
+AGCAGCCTCCTGCGAAGTGTTGTAATCAGCAAGCAACTGCTGTGCGATCTGGTCTGTGACCTCCACGACG
+GGCACATCATTATATTTCCGGTCCAAAATCAACGATGCGTGCGGACCGGCTGAAGGCATAAACGCACAAG
+CACTCAGAGTGCCCATAAGAGGAATGAGTGGCATTACCTTCAAAAGGCGTCGCGTAGAATTCCAGGTCAT
+CATTTTTATTATCGCCTCTGTTAAATTCTGATTTCTATAGAGATTAGGACTGCGGTACGGAGGGCTTCAG
+CACGGCATAGGCCAAATACGAAGCAATCAACGTGATCAGGAACCATTTGACGAAACGCGGCTCCGTCGGG
+TCGCTGGGGGATACAGAGCCTTCGATCACGTCCATGTAGTAAGCATTCTGAACGGCCCGCTCTTCTGCCT
+GCAGAAGGCTCTGGTCATCCAGCAGAACGACCGCGGCCAACTCCTTAATGCTGGACTGCAGATCCGTGAA
+GGTGGAATAAAGCGGAGCCATCTTCTGAGCCACCGCGTTGCGGTTAGCTTCGATATCCGCATCGATAGAT
+TTGACTTGCGCGCGCAATGCTTCGAGTTGCTGGGACTGAGCTGCCAGATAGCTTGAAGCTGCCGCTTTTG
+ACGAAACGTTAATTCTGGCCTGCTGGAAAGCATCAATGGTATTGAGAAGAGACTGATAGGCCGCATCATA
+ATCGGCAATGCCATACTTGCTCTGGAACTCCTGCATCCGTGCAAGTGTTGAACCCAGAGCAGCCTTATCG
+CGAGACGTCTTATCCTTGAGCATCTCCATATCTGCACGGTAGGCCTTGACGCCAGACTGTTTCAGTTCCT
+CTTCAGCGATCTTCAGAACTTGCTGGTTCAGACCGTGCACAAAATCGCGGCTATAACCGTCCACGTTGAG
+CTTTACGGTATTAGACGTTTCATCGACCTCAACCGTGACATGACCGCGGTAATAGTCCCACAGCCGCATG
+TTGTTCGTGCCGAAGAAGGATGCCAGACCACCAAATCCGCCGAGGATATCCCCTCCGCCCCAGTGGTTCT
+TTAAGGCCGGAATGTCCAGGAGAGACAGGCAGTCATTGCCATTAACAAAAGTCTTGAACACGTAGCTTCC
+GGGGGAAGCAGAAGCTCCTCCGGTCGCAGCCGCGGCACCGCCACCACCAGATGATGCCGTGTCGCTGGCG
+CTGTAAATTTTTACGACGCTTTCGCTTTCGTAGCGCGGCGTGGCGATAAGACCCAGGTATGCCCCTACCG
+TGAGCGTCGGGAGGCCACAGATAAGCCAGAAGGACTTTCTCCGGAAGAATATAAGTTTATTTTCTGCCAT
+CTTTTCTCGGTATATTCATGGTTATTTCGTCATCAATTCAAAATCCTGCCGCGCAAGATCGATCTGTTGG
+GTTCCGGCATATGCCATTCAGACCATTGCGCCCATTCATCCTCCGATAAAAACCAGTTCTGGCAATAAGC
+AGTCTCCGCGTGCATCTAAAAGGTGCCCTGCGAAATCAACTTTTCCATTCTAAAGACAAGGTATAATGCC
+TTGAGCTATCCTCGTGGGCAAGGCTTTTTGCTTAAATCCGGAGCAAAATCAAGATCATTTAATATAAACT
+GACCTTGCTCATTCCATATAGCGATAATTCGCTAGGTCAGATCAAGGAAAACGCATAATTTCCGGCGTAT
+CCTCGTGGCTATCAGTCAATGCCGGATCTTCAATCTCTTCAAGGACTACGAAGCTCGGCTGGACCGCGAT
+TTCGGCGTCATGGGGGAAATCCAACGTCTTGCACAGGTTGGTTTCTGGTAACGCATCAGTGAAAATGACA
+CCCCTTGGGGCTGATAGGCCTGCAGGATCAAAGATGTCATCCCACCAACACCCAACAATCCGACTATCTT
+GTGAGCGCGCCACATCTTCCGCCCACAGAACTGCAGCCATTTCCCAGCCAACAATCCCTCCTGCATTAGA
+ATTTCTGCAGCGGGCTTGCCCGGAAGGCGTCAGGCACAGCATGGATTGCCTCACTACTGCGGCCTCTGCC
+AAGCCAGCTTTGATCTTCTCAATGGCGATCTTGAGGCTCTCGCCCTCAAATATCTCGCAGTGATCCAGTT
+CATTGATTGCTTCATCGCGACTATCCGAAGTCATATAGCGACAGCTTCCGATCTCACTGTCGAGATAAAC
+GCTAAGCCATTGATCTGATTTCGTCGCCAGTCCGGTTCCTATCGCCCATTCTGAAATCGCGTCTTCAAAA
+ACCTTATCGTTCCTGGTCGCATGCATATCCAGAAAAAGAAGATCCCCTCCAGCAGCGCTTGAAACCTCCC
+ATGTCGGAGCATTGCCAAGCCTGGCTATGCTCCGCCAAGCCTCTGGGCACGGACTGACAGACACCCCGTC
+GCCTTCGTGAGACGAGGCCTTTCGATGATCGCGGTTCATGGCGCCAACATGAAATACCTTTGGCAAAGAG
+CAGACGGGAATGTTGGGGGTCATGGTGATGTCCTGAACGAAGATGGGGCTTTACCAGGTGAGAAAATCCG
+TGGTTCCTATGCAATTCACAACCCATCAACTTCAGTTGGGATTGGGCAAGGCCTTCTCAGTCGGCCAGAT
+CATCCCTGCTTTCTCACGTTTTCGGGCGTCTCGATCCGTGAAAAGCGTGTTCTTCTCATTCGTCAGGTTG
+CTCATGAGCTTCCTATCGACGGCCATATCTGAAAGACGTCGGGCGGCATCTGCCGCGTGAAGATCCATAC
+CGATCCAGCGTCGCCCGGTCAGTTCTGCTGCCACATAGGTGGTTCCGGATCCGCCGAACGGGTCTAAAAC
+GACACTGCCGGGGTCCGTGCCCATGGATAGCACCCTATCCAGGAGCTTCAGAGGCAGGGCGTTGGCTTCT
+CGGTTTTTGAACTTGGCATGCCTTACAGGGCTAATGTCGGTCCAGACGTCCGAAAGCGAGACGCCGGAGG
+GGTTCATGACGGATTTCTTCCCGCCGTAGTCGTGGACCTCCCCTCCGCAATGCCGGCAGCACTGCAGGGG
+AAGTCTATCGGGATGAAAGATAGCAGGCCGAGGCCCTTTGACGAAATACAGCAAAGAGTAGTGGGCGGGA
+TATAGACGTCCTCTCACCGGCATCCCACATTTGAAATCCACGGCGATCGAATGCCGGAAAGTGAGGTGTC
+GCATGAGATACCCGCCCATGGCGAGGTTCCATTTAGGAAGGTTCCACAGGAACAGAGAGCCTCCGTCACG
+TAAAAGCCTTACGCACTCGGAGAGCCAGCTTTCACACCAATCCAGGTATCGCGCGCCATCCATAGCGTCA
+TCAATGCCTGATGCGTAAGTTTTTCCCAGGTTGAACGGAGGGTCGGCGAAGATAAGGTCTACGCTGCCAC
+TTTCGACCGACCGCATGACGTCCAAGCAATCTCCCTCGTAGAGTCGGCCAAGACCGGTCGTCTTCAGCAG
+ATTAAGACCTGCCTTGGTTCGCGCCATCTCCATTAAAATCCTATCCGGCCATATGTTCCTTGCTGGATAG
+TCCGTGAAGGCCAATCAGGCAAGGAATAAACCGTCACGCCCGGCGACTTATCTTTGCCTAATGCAACTAC
+CGTATTATGCTACAATATACCCAGAGGATAGCTTCTTACGCGGTATTCCTTAATCATGGCGAAGGAATGT
+CGTCTTCCAGAGATGGGGCATCTGCCTCCAGATCAGGGGTCATGGAGTAATGACCAGCTCCATACGCCTC
+TTGGACGCAACCCTCCGCCGTAGGCGCCCGATAGGCCGGACGACCAGCATCTGTCGCGTCATACATCACC
+CAGTCGCCTTCCTGTCCGACCAGAGGCATGCCTTCAAATTTTGATTTCATCGAAAAGTCAGCATAGTGAA
+CGAAATCAAACCCATTCGCCTCGACTACGGACCGGAAGGCTTGCCAGAGCTTTTCTTTTTTATCGCGCAC
+CTTCCGCTGTGCTGATAAATACTCGGGCCTCATGTAACCCAATGTTACAGTTTGCCCTGAGGTGGAAAAT
+CGGTACTCCTGCCCCATTCTTTTCTCAAGTTCGTTCGCATCTTTTTCTATGACGGCGCGAATGTCTTCCG
+GGCAGTCATCTTCAATCCATGGTTTCAGCATAGCGAAAGGAATGGCGCCGCATCGGGCATAACCTTCCCA
+GTCTTTAAACTCCGTTCGTGGTCGCGATCGGTCATAGTATTCAATCCCGACAGTTCTGATGCGGATTGAC
+AGGCGGCTTTCAATAGATGATGCAGGCTTAGACATTATAGGGAGTATCCTGTGTTGAAGTAATCGAAGTC
+ATATTATGACCTTTCATTACGCATAGGACCAACGCATAGACCACCACTGGAGAATTCCATGAAAAGCAGA
+ATTTTATCGGACATAATCGTTGACACTATGGTCGTGAGCGCGTGTCGGATGATCTCTGATGTTTGCACCA
+AGGTGGATGCCGTGGCGCCGGAGGAGCGAAAGGCCTTTGATATTGGGGCAAATGATGCCAGATCACTCAA
+CATTAAGGAGATGGCCCTTCCGGGAAGAGAGCATGCTGCGATGGAGCCATGTCGTACTCAAGCTTATCCA
+TCATAATCGTGCGGGGGATTGAATCTGGCGTACGCTCAATCAGATCCATCAAACCTTCCCGATCAAATCT
+CTGCTCACACTCATCAATCAGTGGCCTAAGAAGACCGAGCATGTCATCACAAGCACGCTGCAACTCGTTC
+ACAGATTTGCCCCAGTCGCGGAGGACTGCAGCGCGGTCCCAATTGTAAGGTTCCGGCCTTTCGCTCTGCA
+GAATGAGGCGGATATTGCTCTCACCATGCCGGGTTGCGATTTCATACATCTTACTCCCGGCCTCGTAGCG
+CAGGGCACATGGCGGCATAGACTTCAGCAGGGCGCAAGATTTCCAGAAGTCTTTCTTTTCAGCAAACCTA
\ No newline at end of file
=====================================
debian/tests/run-unit-test
=====================================
@@ -15,11 +15,11 @@ cd "${AUTOPKGTEST_TMP}"
pilercr -in example.fasta -out report
if [ $(dpkg-architecture -qDEB_BUILD_ARCH) = "amd64" ]
- then
- echo "0f093c279323fd1c9fd1ba2f695f949b report" > checksums
+then
+ echo "c22c584448be758568a1f06d30d55ebd report" > checksums
md5sum --check checksums
echo "PASS"
- else
- [ -s "report" ] || exit 1
- echo "PASS"
- fi
+else
+ [ -s "report" ] || exit 1
+ echo "PASS"
+fi
View it on GitLab: https://salsa.debian.org/med-team/pilercr/-/commit/16e31bad8965fe2041a1faf2a61b29c3548c737e
--
View it on GitLab: https://salsa.debian.org/med-team/pilercr/-/commit/16e31bad8965fe2041a1faf2a61b29c3548c737e
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