Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
c06ae470 by Andreas Tille at 2021-06-22T13:42:22+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,142 +1,138 @@
-Last-Update: Tue, 22 Jun 2021 01:42:04 +0000
+Last-Update: Tue, 22 Jun 2021 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
dcmtk | 178 | {covid-19,imaging} |
- orthanc | 89 | {imaging,covid-19,practice} |
- orthanc-wsi | 45 | {oncology,laboratory,imaging,covid-19,his,practice} |
- gdcm | 41 | {imaging-dev} |
- htsjdk | 31 | {bio-dev} |
- amide | 28 | {imaging} |
- dicom3tools | 25 | {imaging} |
- openslide | 23 | {imaging} |
- dcm2niix | 19 | {imaging} |
- dicomscope | 19 | {imaging} |
- adun.app | 17 | {bio} |
- odin | 16 | {imaging,imaging-dev} |
+ orthanc | 91 | {imaging,covid-19,practice} |
+ orthanc-wsi | 46 | {oncology,laboratory,imaging,covid-19,his,practice} |
+ gdcm | 40 | {imaging-dev} |
+ htsjdk | 28 | {bio-dev} |
+ amide | 26 | {imaging} |
+ dicom3tools | 22 | {imaging} |
+ openslide | 22 | {imaging} |
+ dcm2niix | 17 | {imaging} |
+ dicomscope | 17 | {imaging} |
ngs-sdk | 15 | {bio-dev} |
+ odin | 15 | {imaging,imaging-dev} |
gnumed-server | 14 | {practice,covid-19} |
orthanc-webviewer | 14 | {imaging} |
- gdcm | 13 | {covid-19,imaging} |
+ adun.app | 13 | {bio} |
insighttoolkit4 | 13 | {imaging-dev} |
invesalius | 13 | {imaging} |
- minc-tools | 13 | {imaging} |
- dicomnifti | 11 | {imaging} |
+ gdcm | 11 | {covid-19,imaging} |
gdcm | 10 | {imaging-dev} |
- nifticlib | 10 | {imaging} |
- pixelmed | 10 | {imaging} |
- salmon | 8 | {covid-19,bio} |
- biojava-live | 7 | {bio-dev} |
- ea-utils | 7 | {bio} |
- jebl2 | 7 | {bio-dev} |
- librg-utils-perl | 7 | {bio} |
- melting | 7 | {cloud,bio} |
- ngs-sdk | 7 | {bio-dev} |
- openslide | 7 | {imaging-dev} |
- plastimatch | 7 | {imaging} |
- runcircos-gui | 7 | {bio} |
- bio-tradis | 6 | {bio,bio-dev} |
- king | 6 | {typesetting,imaging} |
- mia | 6 | {imaging} |
- ngs-sdk | 6 | {bio-dev} |
- staden | 6 | {bio} |
- treeview | 6 | {bio,bio-phylogeny} |
- bitseq | 5 | {bio} |
- blasr | 5 | {bio,bio-ngs} |
- brig | 5 | {bio} |
+ minc-tools | 9 | {imaging} |
+ dicomnifti | 8 | {imaging} |
+ ngs-sdk | 8 | {bio-dev} |
+ nifticlib | 8 | {imaging} |
+ pixelmed | 7 | {imaging} |
+ salmon | 7 | {covid-19,bio} |
+ biojava-live | 6 | {bio-dev} |
+ ea-utils | 6 | {bio} |
+ jebl2 | 6 | {bio-dev} |
+ librg-utils-perl | 6 | {bio} |
+ melting | 6 | {cloud,bio} |
+ openslide | 6 | {imaging-dev} |
+ bio-tradis | 5 | {bio,bio-dev} |
busco | 5 | {bio,covid-19} |
- embassy-domainatrix | 5 | {cloud,bio} |
- embassy-domalign | 5 | {cloud,bio} |
- lagan | 5 | {bio} |
+ king | 5 | {typesetting,imaging} |
+ libminc | 5 | {imaging-dev} |
+ ngs-sdk | 5 | {bio-dev} |
nifti2dicom | 5 | {imaging} |
- obitools | 5 | {bio} |
orthanc-dicomweb | 5 | {covid-19,imaging} |
- phast | 5 | {bio} |
- saint | 5 | {bio} |
+ runcircos-gui | 5 | {bio} |
salmid | 5 | {bio} |
- spread-phy | 5 | {bio,bio-phylogeny} |
- stacks | 5 | {bio} |
- anfo | 4 | {bio,cloud} |
- arden | 4 | {bio,cloud} |
- assemblytics | 4 | {bio} |
+ staden | 5 | {bio} |
+ treeview | 5 | {bio,bio-phylogeny} |
bamkit | 4 | {covid-19,bio} |
- beast-mcmc | 4 | {bio-phylogeny,bio} |
- canu | 4 | {bio} |
- embassy-domsearch | 4 | {cloud,bio} |
+ bitseq | 4 | {bio} |
+ blasr | 4 | {bio,bio-ngs} |
+ brig | 4 | {bio} |
+ embassy-domainatrix | 4 | {cloud,bio} |
+ embassy-domalign | 4 | {cloud,bio} |
emboss-explorer | 4 | {bio} |
- fsm-lite | 4 | {bio} |
- gatb-core | 4 | {bio} |
getdata | 4 | {bio} |
- jellyfish1 | 4 | {bio} |
- lamarc | 4 | {bio} |
+ lagan | 4 | {bio} |
libdivsufsort | 4 | {bio-dev} |
- libminc | 4 | {imaging-dev} |
- libncl | 4 | {bio} |
- librdp-taxonomy-tree-java | 4 | {bio-dev} |
- mhap | 4 | {bio,bio-ngs} |
+ mia | 4 | {imaging} |
+ nifticlib | 4 | {imaging-dev} |
+ obitools | 4 | {bio} |
orthanc-postgresql | 4 | {imaging} |
- phyutility | 4 | {cloud,bio} |
- piler | 4 | {bio} |
- placnet | 4 | {bio} |
- prime-phylo | 4 | {cloud,bio} |
- quorum | 4 | {bio} |
- rdp-alignment | 4 | {bio} |
- rdp-classifier | 4 | {bio} |
- sibsim4 | 4 | {bio,cloud} |
- spaced | 4 | {bio} |
- tracetuner | 4 | {bio} |
- yaha | 4 | {bio} |
- zalign | 4 | {cloud,bio} |
+ phast | 4 | {bio} |
+ plastimatch | 4 | {imaging} |
+ saint | 4 | {bio} |
+ spread-phy | 4 | {bio,bio-phylogeny} |
+ anfo | 3 | {bio,cloud} |
+ arden | 3 | {bio,cloud} |
+ assemblytics | 3 | {bio} |
bart-view | 3 | {imaging} |
- biomaj3-cli | 3 | {cloud} |
- clonalframeml | 3 | {covid-19,bio} |
+ beast-mcmc | 3 | {bio-phylogeny,bio} |
+ canu | 3 | {bio} |
clonalorigin | 3 | {bio} |
dicompyler | 3 | {oncology} |
- ecopcr | 3 | {bio} |
elastix | 3 | {imaging} |
- estscan | 3 | {bio} |
- fastml | 3 | {bio} |
- ghmm | 3 | {bio} |
- ipig | 3 | {bio} |
- jmodeltest | 3 | {bio-phylogeny,bio} |
- libpal-java | 3 | {bio-dev} |
+ embassy-domsearch | 3 | {cloud,bio} |
+ fsm-lite | 3 | {bio} |
+ gatb-core | 3 | {bio} |
+ jellyfish1 | 3 | {bio} |
+ lamarc | 3 | {bio} |
+ libncl | 3 | {bio} |
+ librdp-taxonomy-tree-java | 3 | {bio-dev} |
libsbml | 3 | {bio-dev} |
- logol | 3 | {bio} |
- mauve-aligner | 3 | {bio} |
- microbegps | 3 | {bio} |
- nifticlib | 3 | {imaging-dev} |
+ mhap | 3 | {bio,bio-ngs} |
orthanc-mysql | 3 | {imaging} |
oscar | 3 | {tools,data,practice} |
- paraclu | 3 | {bio,cloud} |
- pbdagcon | 3 | {bio} |
- perm | 3 | {bio,cloud} |
- proalign | 3 | {bio,bio-phylogeny} |
+ phyutility | 3 | {cloud,bio} |
+ piler | 3 | {bio} |
+ placnet | 3 | {bio} |
+ prime-phylo | 3 | {cloud,bio} |
pymia | 3 | {imaging-dev} |
- rambo-k | 3 | {bio} |
- rtax | 3 | {bio,cloud} |
- sga | 3 | {bio} |
+ quorum | 3 | {bio} |
+ rdp-alignment | 3 | {bio} |
+ rdp-classifier | 3 | {bio} |
+ sibsim4 | 3 | {bio,cloud} |
sight | 3 | {imaging} |
- soapaligner | 3 | {bio} |
- soapsnp | 3 | {bio} |
- sprai | 3 | {bio} |
- suitename | 3 | {bio} |
- surankco | 3 | {bio} |
- tvc | 3 | {bio} |
+ spaced | 3 | {bio} |
+ stacks | 3 | {bio} |
+ tracetuner | 3 | {bio} |
+ yaha | 3 | {bio} |
+ zalign | 3 | {cloud,bio} |
+ biomaj3-cli | 2 | {cloud} |
blimps | 2 | {bio} |
- delly | 2 | {bio,covid-19} |
- hinge | 2 | {bio} |
- metaphlan2 | 2 | {bio} |
+ clonalframeml | 2 | {covid-19,bio} |
+ ecopcr | 2 | {bio} |
+ estscan | 2 | {bio} |
+ fastml | 2 | {bio} |
+ ghmm | 2 | {bio} |
+ ipig | 2 | {bio} |
+ jmodeltest | 2 | {bio-phylogeny,bio} |
+ libpal-java | 2 | {bio-dev} |
+ logol | 2 | {bio} |
+ mauve-aligner | 2 | {bio} |
+ microbegps | 2 | {bio} |
nipype | 2 | {imaging-dev,imaging} |
orthanc-gdcm | 2 | {imaging} |
- plasmidseeker | 2 | {bio} |
+ paraclu | 2 | {bio,cloud} |
+ pbdagcon | 2 | {bio} |
+ perm | 2 | {bio,cloud} |
+ proalign | 2 | {bio,bio-phylogeny} |
pscan-chip | 2 | {bio} |
qcumber | 2 | {bio} |
+ rambo-k | 2 | {bio} |
+ rtax | 2 | {bio,cloud} |
sambamba | 2 | {bio} |
- samblaster | 2 | {bio,covid-19} |
- segemehl | 2 | {bio} |
+ sga | 2 | {bio} |
sift | 2 | {bio} |
+ soapaligner | 2 | {bio} |
+ soapsnp | 2 | {bio} |
+ sprai | 2 | {bio} |
+ suitename | 2 | {bio} |
+ surankco | 2 | {bio} |
+ tvc | 2 | {bio} |
atropos | 1 | {bio} |
cat-bat | 1 | {bio,covid-19} |
+ delly | 1 | {bio,covid-19} |
+ hinge | 1 | {bio} |
htscodecs | 1 | {covid-19,bio-dev} |
intake | 1 | {bio,bio-dev} |
kmerresistance | 1 | {bio} |
@@ -145,14 +141,18 @@ Last-Update: Tue, 22 Jun 2021 01:42:04 +0000
libctapimkt | 1 | {practice} |
libmuscle | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
+ metaphlan2 | 1 | {bio} |
nanosv | 1 | {covid-19,bio} |
opencfu | 1 | {laboratory} |
orthanc-python | 1 | {covid-19} |
papyrus | 1 | {imaging-dev} |
parallel-fastq-dump | 1 | {covid-19} |
plasmidid | 1 | {bio,covid-19} |
+ plasmidseeker | 1 | {bio} |
python-wdlparse | 1 | {bio-dev} |
+ samblaster | 1 | {bio,covid-19} |
samtools-legacy | 1 | {bio-dev} |
+ segemehl | 1 | {bio} |
simpleitk | 1 | {imaging-dev} |
simrisc | 1 | {oncology} |
skesa | 1 | {bio} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/c06ae4701d625e94a6aa2ec866a40df3f138f346
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/c06ae4701d625e94a6aa2ec866a40df3f138f346
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