Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
25a0b7de by Andreas Tille at 2021-06-26T13:42:21+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,25 +1,25 @@
-Last-Update: Sat, 26 Jun 2021 01:42:04 +0000
+Last-Update: Sat, 26 Jun 2021 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 175 | {covid-19,imaging} |
+ dcmtk | 177 | {covid-19,imaging} |
orthanc | 89 | {imaging,covid-19,practice} |
- orthanc-wsi | 46 | {oncology,laboratory,imaging,covid-19,his,practice} |
- gdcm | 40 | {imaging-dev} |
- htsjdk | 28 | {bio-dev} |
- amide | 25 | {imaging} |
- openslide | 23 | {imaging} |
+ orthanc-wsi | 45 | {oncology,laboratory,imaging,covid-19,his,practice} |
+ gdcm | 39 | {imaging-dev} |
+ htsjdk | 27 | {bio-dev} |
+ amide | 24 | {imaging} |
+ openslide | 22 | {imaging} |
dicom3tools | 20 | {imaging} |
dicomscope | 19 | {imaging} |
dcm2niix | 17 | {imaging} |
- ngs-sdk | 15 | {bio-dev} |
orthanc-webviewer | 15 | {imaging} |
- adun.app | 14 | {bio} |
+ ngs-sdk | 14 | {bio-dev} |
odin | 14 | {imaging,imaging-dev} |
+ adun.app | 13 | {bio} |
gnumed-server | 13 | {practice,covid-19} |
+ gdcm | 12 | {covid-19,imaging} |
insighttoolkit4 | 12 | {imaging-dev} |
invesalius | 12 | {imaging} |
- gdcm | 11 | {covid-19,imaging} |
gdcm | 9 | {imaging-dev} |
minc-tools | 9 | {imaging} |
dicomnifti | 8 | {imaging} |
@@ -36,31 +36,32 @@ Last-Update: Sat, 26 Jun 2021 01:42:04 +0000
salmid | 6 | {bio} |
biojava-live | 5 | {bio-dev} |
bio-tradis | 5 | {bio,bio-dev} |
+ dicompyler | 5 | {oncology} |
librg-utils-perl | 5 | {bio} |
- ngs-sdk | 5 | {bio-dev} |
nifti2dicom | 5 | {imaging} |
nifticlib | 5 | {imaging-dev} |
openslide | 5 | {imaging-dev} |
phast | 5 | {bio} |
runcircos-gui | 5 | {bio} |
- staden | 5 | {bio} |
treeview | 5 | {bio,bio-phylogeny} |
beast-mcmc | 4 | {bio-phylogeny,bio} |
bitseq | 4 | {bio} |
blasr | 4 | {bio,bio-ngs} |
- dicompyler | 4 | {oncology} |
embassy-domainatrix | 4 | {cloud,bio} |
embassy-domalign | 4 | {cloud,bio} |
emboss-explorer | 4 | {bio} |
getdata | 4 | {bio} |
king | 4 | {typesetting,imaging} |
- lagan | 4 | {bio} |
libdivsufsort | 4 | {bio-dev} |
mia | 4 | {imaging} |
+ ngs-sdk | 4 | {bio-dev} |
obitools | 4 | {bio} |
+ orthanc-mysql | 4 | {imaging} |
orthanc-postgresql | 4 | {imaging} |
+ oscar | 4 | {tools,data,practice} |
plastimatch | 4 | {imaging} |
saint | 4 | {bio} |
+ sight | 4 | {imaging} |
spread-phy | 4 | {bio,bio-phylogeny} |
anfo | 3 | {bio,cloud} |
arden | 3 | {bio,cloud} |
@@ -75,13 +76,13 @@ Last-Update: Sat, 26 Jun 2021 01:42:04 +0000
fsm-lite | 3 | {bio} |
gatb-core | 3 | {bio} |
jellyfish1 | 3 | {bio} |
+ lagan | 3 | {bio} |
lamarc | 3 | {bio} |
libncl | 3 | {bio} |
librdp-taxonomy-tree-java | 3 | {bio-dev} |
libsbml | 3 | {bio-dev} |
mhap | 3 | {bio,bio-ngs} |
- orthanc-mysql | 3 | {imaging} |
- oscar | 3 | {tools,data,practice} |
+ nipype | 3 | {imaging-dev,imaging} |
phyutility | 3 | {cloud,bio} |
piler | 3 | {bio} |
prime-phylo | 3 | {cloud,bio} |
@@ -90,9 +91,9 @@ Last-Update: Sat, 26 Jun 2021 01:42:04 +0000
rdp-alignment | 3 | {bio} |
rdp-classifier | 3 | {bio} |
sibsim4 | 3 | {bio,cloud} |
- sight | 3 | {imaging} |
spaced | 3 | {bio} |
stacks | 3 | {bio} |
+ staden | 3 | {bio} |
tracetuner | 3 | {bio} |
yaha | 3 | {bio} |
zalign | 3 | {cloud,bio} |
@@ -108,7 +109,6 @@ Last-Update: Sat, 26 Jun 2021 01:42:04 +0000
libpal-java | 2 | {bio-dev} |
mauve-aligner | 2 | {bio} |
microbegps | 2 | {bio} |
- nipype | 2 | {imaging-dev,imaging} |
orthanc-gdcm | 2 | {imaging} |
paraclu | 2 | {bio,cloud} |
pbdagcon | 2 | {bio} |
@@ -132,7 +132,6 @@ Last-Update: Sat, 26 Jun 2021 01:42:04 +0000
cat-bat | 1 | {bio,covid-19} |
delly | 1 | {bio,covid-19} |
hinge | 1 | {bio} |
- htscodecs | 1 | {covid-19,bio-dev} |
intake | 1 | {bio,bio-dev} |
kmerresistance | 1 | {bio} |
libbio-mage-utils-perl | 1 | {bio-dev} |
@@ -148,12 +147,10 @@ Last-Update: Sat, 26 Jun 2021 01:42:04 +0000
papyrus | 1 | {imaging-dev} |
parallel-fastq-dump | 1 | {covid-19} |
plasmidseeker | 1 | {bio} |
- python-wdlparse | 1 | {bio-dev} |
samblaster | 1 | {bio,covid-19} |
samtools-legacy | 1 | {bio-dev} |
segemehl | 1 | {bio} |
simpleitk | 1 | {imaging-dev} |
- simrisc | 1 | {oncology} |
skesa | 1 | {bio} |
spaln | 1 | {bio,covid-19} |
srf | 1 | {bio-dev} |
@@ -174,6 +171,7 @@ Last-Update: Sat, 26 Jun 2021 01:42:04 +0000
fis-gtm | 0 | {his} |
gatb-core | 0 | {bio-dev} |
gifticlib | 0 | {imaging-dev} |
+ htscodecs | 0 | {covid-19,bio-dev} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
libbioparser-dev | 0 | {bio-dev} |
@@ -218,12 +216,14 @@ Last-Update: Sat, 26 Jun 2021 01:42:04 +0000
python-bcbio-gff | 0 | {bio-dev} |
python-epimodels | 0 | {epi} |
python-seqcluster | 0 | {bio-dev,covid-19} |
+ python-wdlparse | 0 | {bio-dev} |
q2-sample-classifier | 0 | {bio-dev,bio} |
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
shovill | 0 | {covid-19,bio} |
simpleitk | 0 | {imaging-dev} |
+ simrisc | 0 | {oncology} |
skewer | 0 | {bio} |
smrtanalysis | 0 | {covid-19,bio} |
svim | 0 | {bio} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/25a0b7de4bc24694c008f3b0ee05bbc9710f97d7
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/25a0b7de4bc24694c008f3b0ee05bbc9710f97d7
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