Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
ed194b35 by Andreas Tille at 2021-06-28T13:42:21+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,156 +1,152 @@
-Last-Update: Mon, 28 Jun 2021 01:42:03 +0000
+Last-Update: Mon, 28 Jun 2021 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 172 | {covid-19,imaging} |
- orthanc | 88 | {imaging,covid-19,practice} |
+ dcmtk | 168 | {covid-19,imaging} |
+ orthanc | 86 | {imaging,covid-19,practice} |
orthanc-wsi | 44 | {oncology,laboratory,imaging,covid-19,his,practice} |
gdcm | 39 | {imaging-dev} |
htsjdk | 26 | {bio-dev} |
- amide | 24 | {imaging} |
+ amide | 25 | {imaging} |
openslide | 22 | {imaging} |
dicom3tools | 20 | {imaging} |
dicomscope | 19 | {imaging} |
dcm2niix | 17 | {imaging} |
odin | 15 | {imaging,imaging-dev} |
- orthanc-webviewer | 15 | {imaging} |
ngs-sdk | 14 | {bio-dev} |
- adun.app | 13 | {bio} |
+ orthanc-webviewer | 14 | {imaging} |
gdcm | 13 | {covid-19,imaging} |
- gnumed-server | 13 | {practice,covid-19} |
insighttoolkit4 | 13 | {imaging-dev} |
+ adun.app | 12 | {bio} |
+ gnumed-server | 12 | {practice,covid-19} |
invesalius | 12 | {imaging} |
- gdcm | 9 | {imaging-dev} |
+ dicomnifti | 9 | {imaging} |
minc-tools | 9 | {imaging} |
- dicomnifti | 8 | {imaging} |
- nifticlib | 8 | {imaging} |
+ nifticlib | 9 | {imaging} |
+ gdcm | 8 | {imaging-dev} |
+ pixelmed | 8 | {imaging} |
ngs-sdk | 7 | {bio-dev} |
- pixelmed | 7 | {imaging} |
+ openslide | 7 | {imaging-dev} |
busco | 6 | {bio,covid-19} |
- ea-utils | 6 | {bio} |
- jebl2 | 6 | {bio-dev} |
libminc | 6 | {imaging-dev} |
+ nifti2dicom | 6 | {imaging} |
orthanc-dicomweb | 6 | {covid-19,imaging} |
salmid | 6 | {bio} |
- salmon | 6 | {covid-19,bio} |
biojava-live | 5 | {bio-dev} |
+ ea-utils | 5 | {bio} |
+ jebl2 | 5 | {bio-dev} |
librg-utils-perl | 5 | {bio} |
- melting | 5 | {cloud,bio} |
nifti2dicom | 5 | {imaging} |
nifticlib | 5 | {imaging-dev} |
- openslide | 5 | {imaging-dev} |
- phast | 5 | {bio} |
- runcircos-gui | 5 | {bio} |
- treeview | 5 | {bio,bio-phylogeny} |
- beast-mcmc | 4 | {bio-phylogeny,bio} |
- bio-tradis | 4 | {bio,bio-dev} |
- bitseq | 4 | {bio} |
+ salmon | 5 | {covid-19,bio} |
dicompyler | 4 | {oncology} |
- embassy-domainatrix | 4 | {cloud,bio} |
- embassy-domalign | 4 | {cloud,bio} |
- emboss-explorer | 4 | {bio} |
- getdata | 4 | {bio} |
+ melting | 4 | {cloud,bio} |
mia | 4 | {imaging} |
ngs-sdk | 4 | {bio-dev} |
orthanc-mysql | 4 | {imaging} |
orthanc-postgresql | 4 | {imaging} |
oscar | 4 | {tools,data,practice} |
+ phast | 4 | {bio} |
plastimatch | 4 | {imaging} |
- saint | 4 | {bio} |
+ runcircos-gui | 4 | {bio} |
sight | 4 | {imaging} |
- spread-phy | 4 | {bio,bio-phylogeny} |
- anfo | 3 | {bio,cloud} |
- arden | 3 | {bio,cloud} |
- assemblytics | 3 | {bio} |
- bamkit | 3 | {covid-19,bio} |
+ treeview | 4 | {bio,bio-phylogeny} |
bart-view | 3 | {imaging} |
+ beast-mcmc | 3 | {bio-phylogeny,bio} |
+ bio-tradis | 3 | {bio,bio-dev} |
+ bitseq | 3 | {bio} |
blasr | 3 | {bio,bio-ngs} |
- brig | 3 | {bio} |
- canu | 3 | {bio} |
- clonalorigin | 3 | {bio} |
elastix | 3 | {imaging} |
- embassy-domsearch | 3 | {cloud,bio} |
- fsm-lite | 3 | {bio} |
- gatb-core | 3 | {bio} |
- jellyfish1 | 3 | {bio} |
+ embassy-domainatrix | 3 | {cloud,bio} |
+ embassy-domalign | 3 | {cloud,bio} |
+ emboss-explorer | 3 | {bio} |
+ getdata | 3 | {bio} |
king | 3 | {typesetting,imaging} |
lagan | 3 | {bio} |
- lamarc | 3 | {bio} |
libdivsufsort | 3 | {bio-dev} |
- libncl | 3 | {bio} |
- librdp-taxonomy-tree-java | 3 | {bio-dev} |
libsbml | 3 | {bio-dev} |
- mhap | 3 | {bio,bio-ngs} |
nipype | 3 | {imaging-dev,imaging} |
obitools | 3 | {bio} |
- phyutility | 3 | {cloud,bio} |
- piler | 3 | {bio} |
- prime-phylo | 3 | {cloud,bio} |
- quorum | 3 | {bio} |
- rdp-classifier | 3 | {bio} |
- sibsim4 | 3 | {bio,cloud} |
- spaced | 3 | {bio} |
- stacks | 3 | {bio} |
+ saint | 3 | {bio} |
+ spread-phy | 3 | {bio,bio-phylogeny} |
tracetuner | 3 | {bio} |
- yaha | 3 | {bio} |
- zalign | 3 | {cloud,bio} |
+ anfo | 2 | {bio,cloud} |
+ arden | 2 | {bio,cloud} |
+ assemblytics | 2 | {bio} |
+ bamkit | 2 | {covid-19,bio} |
biomaj3-cli | 2 | {cloud} |
blimps | 2 | {bio} |
- clonalframeml | 2 | {covid-19,bio} |
- ecopcr | 2 | {bio} |
+ brig | 2 | {bio} |
+ canu | 2 | {bio} |
+ clonalorigin | 2 | {bio} |
+ embassy-domsearch | 2 | {cloud,bio} |
estscan | 2 | {bio} |
- fastml | 2 | {bio} |
+ fsm-lite | 2 | {bio} |
+ gatb-core | 2 | {bio} |
ghmm | 2 | {bio} |
- ipig | 2 | {bio} |
- jmodeltest | 2 | {bio-phylogeny,bio} |
- libpal-java | 2 | {bio-dev} |
- mauve-aligner | 2 | {bio} |
- microbegps | 2 | {bio} |
+ jellyfish1 | 2 | {bio} |
+ lamarc | 2 | {bio} |
+ libncl | 2 | {bio} |
+ librdp-taxonomy-tree-java | 2 | {bio-dev} |
+ logol | 2 | {bio} |
+ mhap | 2 | {bio,bio-ngs} |
orthanc-gdcm | 2 | {imaging} |
- paraclu | 2 | {bio,cloud} |
pbdagcon | 2 | {bio} |
- perm | 2 | {bio,cloud} |
- placnet | 2 | {bio} |
- proalign | 2 | {bio,bio-phylogeny} |
- pscan-chip | 2 | {bio} |
+ phyutility | 2 | {cloud,bio} |
+ piler | 2 | {bio} |
+ prime-phylo | 2 | {cloud,bio} |
pymia | 2 | {imaging-dev} |
- qcumber | 2 | {bio} |
- rambo-k | 2 | {bio} |
- rdp-alignment | 2 | {bio} |
- rtax | 2 | {bio,cloud} |
- sambamba | 2 | {bio} |
- sga | 2 | {bio} |
+ quorum | 2 | {bio} |
+ rdp-classifier | 2 | {bio} |
+ sibsim4 | 2 | {bio,cloud} |
sift | 2 | {bio} |
- soapaligner | 2 | {bio} |
- soapsnp | 2 | {bio} |
- sprai | 2 | {bio} |
- staden | 2 | {bio} |
- suitename | 2 | {bio} |
- surankco | 2 | {bio} |
+ spaced | 2 | {bio} |
+ stacks | 2 | {bio} |
tvc | 2 | {bio} |
- atropos | 1 | {bio} |
+ yaha | 2 | {bio} |
+ zalign | 2 | {cloud,bio} |
cat-bat | 1 | {bio,covid-19} |
+ clonalframeml | 1 | {covid-19,bio} |
delly | 1 | {bio,covid-19} |
+ ecopcr | 1 | {bio} |
+ fastml | 1 | {bio} |
+ gifticlib | 1 | {imaging-dev} |
hinge | 1 | {bio} |
- kmerresistance | 1 | {bio} |
+ ipig | 1 | {bio} |
+ jmodeltest | 1 | {bio-phylogeny,bio} |
libctapimkt | 1 | {practice} |
libmuscle | 1 | {bio-dev} |
+ libpal-java | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
- logol | 1 | {bio} |
+ mauve-aligner | 1 | {bio} |
metaphlan2 | 1 | {bio} |
- nanosv | 1 | {covid-19,bio} |
+ microbegps | 1 | {bio} |
orthanc-python | 1 | {covid-19} |
papyrus | 1 | {imaging-dev} |
- parallel-fastq-dump | 1 | {covid-19} |
+ paraclu | 1 | {bio,cloud} |
+ perm | 1 | {bio,cloud} |
+ placnet | 1 | {bio} |
plasmidseeker | 1 | {bio} |
+ proalign | 1 | {bio,bio-phylogeny} |
+ pscan-chip | 1 | {bio} |
+ qcumber | 1 | {bio} |
+ rambo-k | 1 | {bio} |
+ rdp-alignment | 1 | {bio} |
+ rtax | 1 | {bio,cloud} |
+ sambamba | 1 | {bio} |
samblaster | 1 | {bio,covid-19} |
samtools-legacy | 1 | {bio-dev} |
segemehl | 1 | {bio} |
+ sga | 1 | {bio} |
simpleitk | 1 | {imaging-dev} |
- skesa | 1 | {bio} |
- spaln | 1 | {bio,covid-19} |
- varscan | 1 | {bio,covid-19} |
+ soapaligner | 1 | {bio} |
+ soapsnp | 1 | {bio} |
+ sprai | 1 | {bio} |
+ staden | 1 | {bio} |
+ suitename | 1 | {bio} |
+ surankco | 1 | {bio} |
acedb | 0 | {cloud,bio} |
+ atropos | 0 | {bio} |
bambamc | 0 | {bio-dev} |
bbmap | 0 | {covid-19,bio} |
biojava4-live | 0 | {bio-dev} |
@@ -165,9 +161,9 @@ Last-Update: Mon, 28 Jun 2021 01:42:03 +0000
emmax | 0 | {bio} |
fis-gtm | 0 | {his} |
gatb-core | 0 | {bio-dev} |
- gifticlib | 0 | {imaging-dev} |
htscodecs | 0 | {covid-19,bio-dev} |
intake | 0 | {bio,bio-dev} |
+ kmerresistance | 0 | {bio} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
libbio-mage-utils-perl | 0 | {bio-dev} |
@@ -200,11 +196,13 @@ Last-Update: Mon, 28 Jun 2021 01:42:03 +0000
mia | 0 | {imaging-dev} |
miaviewit | 0 | {imaging-dev} |
milib | 0 | {bio-dev,covid-19} |
+ nanosv | 0 | {covid-19,bio} |
ncbi-vdb | 0 | {bio-dev} |
nifticlib | 0 | {imaging-dev} |
opencfu | 0 | {laboratory} |
opensurgsim | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
+ parallel-fastq-dump | 0 | {covid-19} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
pigx-rnaseq | 0 | {covid-19,bio} |
@@ -223,19 +221,22 @@ Last-Update: Mon, 28 Jun 2021 01:42:03 +0000
shovill | 0 | {covid-19,bio} |
simpleitk | 0 | {imaging-dev} |
simrisc | 0 | {oncology} |
+ skesa | 0 | {bio} |
skewer | 0 | {bio} |
smrtanalysis | 0 | {covid-19,bio} |
+ spaln | 0 | {bio,covid-19} |
srf | 0 | {bio-dev} |
svim | 0 | {bio} |
thesias | 0 | {covid-19,bio} |
tophat-recondition | 0 | {covid-19,bio} |
trace2dbest | 0 | {bio} |
varna | 0 | {bio} |
+ varscan | 0 | {bio,covid-19} |
vienna-rna | 0 | {bio,covid-19} |
xdffileio | 0 | {imaging-dev} |
yanagiba | 0 | {bio,covid-19} |
mssstest | -1 | {tools} |
python-seqcluster | -1 | {bio} |
sight | -1 | {imaging-dev} |
-(268 rows)
+(269 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/ed194b35dce9ed7b20e66695b698d799808f7dc2
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/ed194b35dce9ed7b20e66695b698d799808f7dc2
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