Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
22ca744c by Andreas Tille at 2021-03-01T13:42:23+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,158 +1,160 @@
-Last-Update: Mon, 01 Mar 2021 01:42:04 +0000
+Last-Update: Mon, 01 Mar 2021 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 189 | {imaging,covid-19} |
- orthanc | 99 | {covid-19,imaging,practice} |
+ dcmtk | 188 | {imaging,covid-19} |
+ orthanc | 97 | {covid-19,imaging,practice} |
orthanc-wsi | 48 | {imaging,covid-19,laboratory,his,oncology,practice} |
- gdcm | 45 | {imaging-dev} |
- amide | 44 | {imaging} |
- dicom3tools | 37 | {imaging} |
+ gdcm | 46 | {imaging-dev} |
+ amide | 43 | {imaging} |
+ dicom3tools | 38 | {imaging} |
dicomscope | 31 | {imaging} |
htsjdk | 24 | {bio-dev} |
dcm2niix | 23 | {imaging} |
- nifticlib | 21 | {imaging} |
- dicomnifti | 20 | {imaging} |
+ nifticlib | 23 | {imaging} |
+ dicomnifti | 22 | {imaging} |
+ minc-tools | 20 | {imaging} |
odin | 20 | {imaging,imaging-dev} |
- minc-tools | 19 | {imaging} |
- gdcm | 18 | {covid-19,imaging} |
- invesalius | 16 | {imaging} |
+ gdcm | 19 | {covid-19,imaging} |
+ plastimatch | 16 | {imaging} |
gnumed-server | 15 | {covid-19,practice} |
- plastimatch | 15 | {imaging} |
- vtk-dicom | 13 | {imaging} |
+ invesalius | 15 | {imaging} |
+ vtk-dicom | 15 | {imaging} |
+ mia | 13 | {imaging} |
+ pixelmed | 13 | {imaging} |
gdcm | 12 | {imaging-dev} |
- mia | 12 | {imaging} |
ngs-sdk | 12 | {bio-dev} |
- pixelmed | 12 | {imaging} |
- openslide | 11 | {imaging} |
- adun.app | 10 | {bio} |
+ openslide | 12 | {imaging} |
+ adun.app | 11 | {bio} |
+ nifti2dicom | 11 | {imaging} |
insighttoolkit4 | 10 | {imaging-dev} |
jebl2 | 10 | {bio-dev} |
king | 10 | {typesetting,imaging} |
nifti2dicom | 10 | {imaging} |
orthanc-webviewer | 10 | {imaging} |
- biojava-live | 8 | {bio-dev} |
- jellyfish1 | 8 | {bio} |
- melting | 8 | {bio,cloud} |
+ biojava-live | 9 | {bio-dev} |
+ jellyfish1 | 9 | {bio} |
+ melting | 9 | {bio,cloud} |
+ phast | 8 | {bio} |
+ anfo | 7 | {bio,cloud} |
+ beast-mcmc | 7 | {bio,bio-phylogeny} |
+ bio-tradis | 7 | {bio,bio-dev} |
+ bitseq | 7 | {bio} |
dicompyler | 7 | {oncology} |
ea-utils | 7 | {bio} |
- phast | 7 | {bio} |
- anfo | 6 | {bio,cloud} |
- beast-mcmc | 6 | {bio,bio-phylogeny} |
- bio-tradis | 6 | {bio,bio-dev} |
- bitseq | 6 | {bio} |
- ecopcr | 6 | {bio} |
+ ecopcr | 7 | {bio} |
+ embassy-domainatrix | 7 | {bio,cloud} |
+ lagan | 7 | {bio} |
+ libncl | 7 | {bio} |
+ ngs-sdk | 7 | {bio-dev} |
+ perm | 7 | {cloud,bio} |
+ quorum | 7 | {bio} |
+ stacks | 7 | {bio} |
+ treeview | 7 | {bio-phylogeny,bio} |
+ arden | 6 | {bio,cloud} |
+ clonalorigin | 6 | {bio} |
elastix | 6 | {imaging} |
- embassy-domainatrix | 6 | {bio,cloud} |
- lagan | 6 | {bio} |
- libncl | 6 | {bio} |
+ embassy-domalign | 6 | {cloud,bio} |
+ embassy-domsearch | 6 | {bio,cloud} |
+ lamarc | 6 | {bio} |
+ librg-utils-perl | 6 | {bio} |
libsbml | 6 | {bio-dev} |
- ngs-sdk | 6 | {bio-dev} |
+ mauve-aligner | 6 | {bio} |
obitools | 6 | {bio} |
orthanc-dicomweb | 6 | {imaging,covid-19} |
- perm | 6 | {cloud,bio} |
- quorum | 6 | {bio} |
- stacks | 6 | {bio} |
- treeview | 6 | {bio-phylogeny,bio} |
- arden | 5 | {bio,cloud} |
+ phyutility | 6 | {bio,cloud} |
+ prime-phylo | 6 | {cloud,bio} |
+ runcircos-gui | 6 | {bio} |
+ saint | 6 | {bio} |
+ salmon | 6 | {covid-19,bio} |
+ sibsim4 | 6 | {bio,cloud} |
+ soapsnp | 6 | {bio} |
+ spread-phy | 6 | {bio,bio-phylogeny} |
+ assemblytics | 5 | {bio} |
bart-view | 5 | {imaging} |
- clonalorigin | 5 | {bio} |
- embassy-domalign | 5 | {cloud,bio} |
- embassy-domsearch | 5 | {bio,cloud} |
- lamarc | 5 | {bio} |
+ brig | 5 | {bio} |
+ canu | 5 | {bio} |
+ clonalframeml | 5 | {bio,covid-19} |
+ estscan | 5 | {bio} |
+ fsm-lite | 5 | {bio} |
+ ghmm | 5 | {bio} |
+ hinge | 5 | {bio} |
+ ipig | 5 | {bio} |
+ jmodeltest | 5 | {bio-phylogeny,bio} |
libminc | 5 | {imaging-dev} |
- librg-utils-perl | 5 | {bio} |
- mauve-aligner | 5 | {bio} |
- ngs-sdk | 5 | {bio-dev} |
+ libpal-java | 5 | {bio-dev} |
openslide | 5 | {imaging-dev} |
- phyutility | 5 | {bio,cloud} |
- prime-phylo | 5 | {cloud,bio} |
+ paraclu | 5 | {cloud,bio} |
+ proalign | 5 | {bio,bio-phylogeny} |
+ pscan-chip | 5 | {bio} |
pymia | 5 | {imaging-dev} |
- runcircos-gui | 5 | {bio} |
- saint | 5 | {bio} |
+ qcumber | 5 | {bio} |
+ rdp-alignment | 5 | {bio} |
+ rtax | 5 | {bio,cloud} |
salmid | 5 | {bio} |
- salmon | 5 | {covid-19,bio} |
- sibsim4 | 5 | {bio,cloud} |
- soapsnp | 5 | {bio} |
- spread-phy | 5 | {bio,bio-phylogeny} |
- assemblytics | 4 | {bio} |
- brig | 4 | {bio} |
+ samblaster | 5 | {bio,covid-19} |
+ seqsero | 5 | {bio} |
+ soapaligner | 5 | {bio} |
+ staden | 5 | {bio} |
+ surankco | 5 | {bio} |
+ tracetuner | 5 | {bio} |
+ tvc | 5 | {bio} |
+ yaha | 5 | {bio} |
+ zalign | 5 | {bio,cloud} |
+ biomaj3-cli | 4 | {cloud} |
+ blasr | 4 | {bio,bio-ngs} |
busco | 4 | {bio,covid-19} |
- canu | 4 | {bio} |
- clonalframeml | 4 | {bio,covid-19} |
- estscan | 4 | {bio} |
- fsm-lite | 4 | {bio} |
+ delly | 4 | {bio,covid-19} |
+ fastml | 4 | {bio} |
+ gatb-core | 4 | {bio} |
getdata | 4 | {bio} |
- ghmm | 4 | {bio} |
- hinge | 4 | {bio} |
- ipig | 4 | {bio} |
- jmodeltest | 4 | {bio-phylogeny,bio} |
libdivsufsort | 4 | {bio-dev} |
- libpal-java | 4 | {bio-dev} |
- paraclu | 4 | {cloud,bio} |
- proalign | 4 | {bio,bio-phylogeny} |
- pscan-chip | 4 | {bio} |
- qcumber | 4 | {bio} |
- rdp-alignment | 4 | {bio} |
- rtax | 4 | {bio,cloud} |
- samblaster | 4 | {bio,covid-19} |
- seqsero | 4 | {bio} |
- soapaligner | 4 | {bio} |
- staden | 4 | {bio} |
- surankco | 4 | {bio} |
- tracetuner | 4 | {bio} |
- tvc | 4 | {bio} |
- yaha | 4 | {bio} |
- zalign | 4 | {bio,cloud} |
+ librdp-taxonomy-tree-java | 4 | {bio-dev} |
+ mhap | 4 | {bio,bio-ngs} |
+ microbegps | 4 | {bio} |
+ ngs-sdk | 4 | {bio-dev} |
+ piler | 4 | {bio} |
+ placnet | 4 | {bio} |
+ rambo-k | 4 | {bio} |
+ rdp-classifier | 4 | {bio} |
+ sga | 4 | {bio} |
+ spaced | 4 | {bio} |
+ sprai | 4 | {bio} |
+ suitename | 4 | {bio} |
atropos | 3 | {bio} |
- biomaj3-cli | 3 | {cloud} |
- blasr | 3 | {bio,bio-ngs} |
- delly | 3 | {bio,covid-19} |
- fastml | 3 | {bio} |
- gatb-core | 3 | {bio} |
- librdp-taxonomy-tree-java | 3 | {bio-dev} |
- mhap | 3 | {bio,bio-ngs} |
- microbegps | 3 | {bio} |
+ blimps | 3 | {bio} |
+ cufflinks | 3 | {cloud,bio} |
+ logol | 3 | {bio} |
orthanc-postgresql | 3 | {imaging} |
- piler | 3 | {bio} |
- placnet | 3 | {bio} |
- rambo-k | 3 | {bio} |
- rdp-classifier | 3 | {bio} |
- sga | 3 | {bio} |
- sight | 3 | {imaging} |
- spaced | 3 | {bio} |
- sprai | 3 | {bio} |
- suitename | 3 | {bio} |
+ pbdagcon | 3 | {bio} |
+ sift | 3 | {bio} |
+ varscan | 3 | {bio,covid-19} |
bamkit | 2 | {covid-19,bio} |
- blimps | 2 | {bio} |
cat-bat | 2 | {bio,covid-19} |
- cufflinks | 2 | {cloud,bio} |
+ gifticlib | 2 | {imaging-dev} |
kmerresistance | 2 | {bio} |
- logol | 2 | {bio} |
+ metaphlan2 | 2 | {bio} |
nanosv | 2 | {covid-19,bio} |
nifticlib | 2 | {imaging-dev} |
orthanc-mysql | 2 | {imaging} |
oscar | 2 | {data,practice,tools} |
- pbdagcon | 2 | {bio} |
+ plasmidseeker | 2 | {bio} |
sambamba | 2 | {bio} |
- sift | 2 | {bio} |
+ segemehl | 2 | {bio} |
+ sight | 2 | {imaging} |
skesa | 2 | {bio} |
spaln | 2 | {covid-19,bio} |
trace2dbest | 2 | {bio} |
- varscan | 2 | {bio,covid-19} |
acedb | 1 | {cloud,bio} |
bbmap | 1 | {bio,covid-19} |
bustools | 1 | {covid-19,bio} |
ctn | 1 | {imaging-dev} |
emboss-explorer | 1 | {bio} |
emmax | 1 | {bio} |
- gifticlib | 1 | {imaging-dev} |
libctapimkt | 1 | {practice} |
libmuscle | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
- metaphlan2 | 1 | {bio} |
ncbi-vdb | 1 | {bio-dev} |
- opencfu | 1 | {laboratory} |
opensurgsim | 1 | {imaging-dev} |
orthanc-gdcm | 1 | {imaging} |
papyrus | 1 | {imaging-dev} |
@@ -160,11 +162,11 @@ Last-Update: Mon, 01 Mar 2021 01:42:04 +0000
pigx-rnaseq | 1 | {covid-19,bio} |
pilercr | 1 | {bio} |
pique | 1 | {bio} |
- plasmidseeker | 1 | {bio} |
pplacer | 1 | {bio,covid-19,bio-phylogeny} |
python-bcbio-gff | 1 | {bio-dev} |
samtools-legacy | 1 | {bio-dev} |
- segemehl | 1 | {bio} |
+ seq-gen | 1 | {bio} |
+ simrisc | 1 | {oncology} |
skewer | 1 | {bio} |
srf | 1 | {bio-dev} |
svim | 1 | {bio} |
@@ -217,6 +219,7 @@ Last-Update: Mon, 01 Mar 2021 01:42:04 +0000
milib | 0 | {bio-dev,covid-19} |
mssstest | 0 | {tools} |
nifticlib | 0 | {imaging-dev} |
+ opencfu | 0 | {laboratory} |
orthanc-imagej | 0 | {imaging} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
@@ -226,15 +229,13 @@ Last-Update: Mon, 01 Mar 2021 01:42:04 +0000
q2-sample-classifier | 0 | {bio,bio-dev} |
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
- seq-gen | 0 | {bio} |
shovill | 0 | {covid-19,bio} |
sight | 0 | {imaging-dev} |
simpleitk | 0 | {imaging-dev} |
- simrisc | 0 | {oncology} |
smrtanalysis | 0 | {covid-19,bio} |
vienna-rna | 0 | {bio,covid-19} |
vtk-dicom | 0 | {imaging-dev} |
xdffileio | 0 | {imaging-dev} |
orthanc-python | -1 | {covid-19} |
-(266 rows)
+(267 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/22ca744c8e088a267e6f6fbdd5594e60b02949a6
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/22ca744c8e088a267e6f6fbdd5594e60b02949a6
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