[med-svn] [Git][med-team/mrtrix3][master] 2 commits: Improve debian/rules clean

Julien Lamy gitlab at salsa.debian.org
Thu Mar 4 09:40:17 GMT 2021 


Julien Lamy pushed to branch master at Debian Med / mrtrix3


Commits:
e4f76bdc by Julien Lamy at 2021-03-04T09:20:29+01:00
Improve debian/rules clean

- - - - -
a6d1ba6e by Julien Lamy at 2021-03-04T10:37:40+01:00
Update symlinks

- - - - -


3 changed files:

- debian/changelog
- debian/mrtrix3.links
- debian/rules


Changes:

=====================================
debian/changelog
=====================================
@@ -5,11 +5,16 @@ mrtrix3 (3.0.2-1) UNRELEASED; urgency=medium
 
   [ Yaroslav Halchenko ]
   * Fresh upstream release
+    Closes: #961051
   * remove debian/gbp.conf to simply conform to the team setup
-  * debian/patches
-    - up_blend_python - updated also to force to use python3
   * disable running tests since require test data which is not shipped
     along
+  
+  [ Julien Lamy ]
+  * Refresh patches
+  * Fix debian/rules clean
+  * debian/patches/mrtrix_version.patch fixes building from a 
+    Debianized Git repository
 
  -- Yaroslav Halchenko <debian at onerussian.com>  Wed, 25 Nov 2020 20:25:47 -0500
 


=====================================
debian/mrtrix3.links
=====================================
@@ -1,17 +1,135 @@
+usr/lib/mrtrix3/bin/5tt2gmwmi usr/bin/5tt2gmwmi
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/5tt2gmwmi.1.gz
+usr/lib/mrtrix3/bin/5tt2vis usr/bin/5tt2vis
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/5tt2vis.1.gz
+usr/lib/mrtrix3/bin/5ttcheck usr/bin/5ttcheck
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/5ttcheck.1.gz
+usr/lib/mrtrix3/bin/5ttedit usr/bin/5ttedit
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/5ttedit.1.gz
+usr/lib/mrtrix3/bin/5ttgen usr/bin/5ttgen
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/5ttgen.1.gz
+usr/lib/mrtrix3/bin/afdconnectivity usr/bin/afdconnectivity
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/afdconnectivity.1.gz
+usr/lib/mrtrix3/bin/amp2response usr/bin/amp2response
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/amp2response.1.gz
+usr/lib/mrtrix3/bin/amp2sh usr/bin/amp2sh
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/amp2sh.1.gz
+usr/lib/mrtrix3/bin/blend usr/bin/blend
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/blend.1.gz
+usr/lib/mrtrix3/bin/connectome2tck usr/bin/connectome2tck
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/connectome2tck.1.gz
+usr/lib/mrtrix3/bin/connectomeedit usr/bin/connectomeedit
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/connectomeedit.1.gz
+usr/lib/mrtrix3/bin/connectomestats usr/bin/connectomestats
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/connectomestats.1.gz
+usr/lib/mrtrix3/bin/convert_bruker usr/bin/convert_bruker
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/convert_bruker.1.gz
+usr/lib/mrtrix3/bin/dcmedit usr/bin/dcmedit
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/dcmedit.1.gz
+usr/lib/mrtrix3/bin/dcminfo usr/bin/dcminfo
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/dcminfo.1.gz
+usr/lib/mrtrix3/bin/dirflip usr/bin/dirflip
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/dirflip.1.gz
+usr/lib/mrtrix3/bin/dirgen usr/bin/dirgen
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/dirgen.1.gz
+usr/lib/mrtrix3/bin/dirmerge usr/bin/dirmerge
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/dirmerge.1.gz
+usr/lib/mrtrix3/bin/dirorder usr/bin/dirorder
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/dirorder.1.gz
+usr/lib/mrtrix3/bin/dirstat usr/bin/dirstat
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/dirstat.1.gz
+usr/lib/mrtrix3/bin/dwi2adc usr/bin/dwi2adc
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/dwi2adc.1.gz
+usr/lib/mrtrix3/bin/dwi2fod usr/bin/dwi2fod
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/dwi2fod.1.gz
+usr/lib/mrtrix3/bin/dwi2mask usr/bin/dwi2mask
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/dwi2mask.1.gz
+usr/lib/mrtrix3/bin/dwi2response usr/bin/dwi2response
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/dwi2response.1.gz
+usr/lib/mrtrix3/bin/dwi2tensor usr/bin/dwi2tensor
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/dwi2tensor.1.gz
+usr/lib/mrtrix3/bin/dwibiascorrect usr/bin/dwibiascorrect
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/dwibiascorrect.1.gz
+usr/lib/mrtrix3/bin/dwicat usr/bin/dwicat
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/dwicat.1.gz
+usr/lib/mrtrix3/bin/dwidenoise usr/bin/dwidenoise
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/dwidenoise.1.gz
+usr/lib/mrtrix3/bin/dwiextract usr/bin/dwiextract
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/dwiextract.1.gz
+usr/lib/mrtrix3/bin/dwifslpreproc usr/bin/dwifslpreproc
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/dwifslpreproc.1.gz
+usr/lib/mrtrix3/bin/dwigradcheck usr/bin/dwigradcheck
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/dwigradcheck.1.gz
+usr/lib/mrtrix3/bin/dwinormalise usr/bin/dwinormalise
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/dwinormalise.1.gz
+usr/lib/mrtrix3/bin/dwishellmath usr/bin/dwishellmath
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/dwishellmath.1.gz
+usr/lib/mrtrix3/bin/fixel2peaks usr/bin/fixel2peaks
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/fixel2peaks.1.gz
+usr/lib/mrtrix3/bin/fixel2sh usr/bin/fixel2sh
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/fixel2sh.1.gz
+usr/lib/mrtrix3/bin/fixel2tsf usr/bin/fixel2tsf
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/fixel2tsf.1.gz
+usr/lib/mrtrix3/bin/fixel2voxel usr/bin/fixel2voxel
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/fixel2voxel.1.gz
+usr/lib/mrtrix3/bin/fixelcfestats usr/bin/fixelcfestats
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/fixelcfestats.1.gz
+usr/lib/mrtrix3/bin/fixelconnectivity usr/bin/fixelconnectivity
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/fixelconnectivity.1.gz
+usr/lib/mrtrix3/bin/fixelconvert usr/bin/fixelconvert
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/fixelconvert.1.gz
+usr/lib/mrtrix3/bin/fixelcorrespondence usr/bin/fixelcorrespondence
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/fixelcorrespondence.1.gz
+usr/lib/mrtrix3/bin/fixelcrop usr/bin/fixelcrop
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/fixelcrop.1.gz
+usr/lib/mrtrix3/bin/fixelfilter usr/bin/fixelfilter
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/fixelfilter.1.gz
+usr/lib/mrtrix3/bin/fixelreorient usr/bin/fixelreorient
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/fixelreorient.1.gz
+usr/lib/mrtrix3/bin/fod2dec usr/bin/fod2dec
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/fod2dec.1.gz
+usr/lib/mrtrix3/bin/fod2fixel usr/bin/fod2fixel
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/fod2fixel.1.gz
+usr/lib/mrtrix3/bin/for_each usr/bin/for_each
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/for_each.1.gz
+usr/lib/mrtrix3/bin/gen_scheme usr/bin/gen_scheme
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/gen_scheme.1.gz
+usr/lib/mrtrix3/bin/label2colour usr/bin/label2colour
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/label2colour.1.gz
+usr/lib/mrtrix3/bin/label2mesh usr/bin/label2mesh
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/label2mesh.1.gz
+usr/lib/mrtrix3/bin/labelconvert usr/bin/labelconvert
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/labelconvert.1.gz
+usr/lib/mrtrix3/bin/labelsgmfix usr/bin/labelsgmfix
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/labelsgmfix.1.gz
+usr/lib/mrtrix3/bin/labelstats usr/bin/labelstats
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/labelstats.1.gz
+usr/lib/mrtrix3/bin/maskdump usr/bin/maskdump
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/maskdump.1.gz
+usr/lib/mrtrix3/bin/maskfilter usr/bin/maskfilter
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/maskfilter.1.gz
+usr/lib/mrtrix3/bin/mesh2voxel usr/bin/mesh2voxel
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/mesh2voxel.1.gz
+usr/lib/mrtrix3/bin/meshconvert usr/bin/meshconvert
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/meshconvert.1.gz
+usr/lib/mrtrix3/bin/meshfilter usr/bin/meshfilter
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/meshfilter.1.gz
 usr/lib/mrtrix3/bin/mraverageheader usr/bin/mraverageheader
 /usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/mraverageheader.1.gz
 usr/lib/mrtrix3/bin/mrcalc usr/bin/mrcalc
 /usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/mrcalc.1.gz
 usr/lib/mrtrix3/bin/mrcat usr/bin/mrcat
 /usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/mrcat.1.gz
+usr/lib/mrtrix3/bin/mrcentroid usr/bin/mrcentroid
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/mrcentroid.1.gz
 usr/lib/mrtrix3/bin/mrcheckerboardmask usr/bin/mrcheckerboardmask
 /usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/mrcheckerboardmask.1.gz
 usr/lib/mrtrix3/bin/mrclusterstats usr/bin/mrclusterstats
 /usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/mrclusterstats.1.gz
+usr/lib/mrtrix3/bin/mrcolour usr/bin/mrcolour
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/mrcolour.1.gz
 usr/lib/mrtrix3/bin/mrconvert usr/bin/mrconvert
 /usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/mrconvert.1.gz
-usr/lib/mrtrix3/bin/mrcrop usr/bin/mrcrop
-/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/mrcrop.1.gz
 usr/lib/mrtrix3/bin/mrdegibbs usr/bin/mrdegibbs
 /usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/mrdegibbs.1.gz
 usr/lib/mrtrix3/bin/mrdump usr/bin/mrdump
@@ -20,6 +138,8 @@ usr/lib/mrtrix3/bin/mredit usr/bin/mredit
 /usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/mredit.1.gz
 usr/lib/mrtrix3/bin/mrfilter usr/bin/mrfilter
 /usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/mrfilter.1.gz
+usr/lib/mrtrix3/bin/mrgrid usr/bin/mrgrid
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/mrgrid.1.gz
 usr/lib/mrtrix3/bin/mrhistmatch usr/bin/mrhistmatch
 /usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/mrhistmatch.1.gz
 usr/lib/mrtrix3/bin/mrhistogram usr/bin/mrhistogram
@@ -30,19 +150,111 @@ usr/lib/mrtrix3/bin/mrmath usr/bin/mrmath
 /usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/mrmath.1.gz
 usr/lib/mrtrix3/bin/mrmetric usr/bin/mrmetric
 /usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/mrmetric.1.gz
-usr/lib/mrtrix3/bin/mrpad usr/bin/mrpad
-/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/mrpad.1.gz
 usr/lib/mrtrix3/bin/mrregister usr/bin/mrregister
 /usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/mrregister.1.gz
-usr/lib/mrtrix3/bin/mrresize usr/bin/mrresize
-/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/mrresize.1.gz
 usr/lib/mrtrix3/bin/mrstats usr/bin/mrstats
 /usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/mrstats.1.gz
 usr/lib/mrtrix3/bin/mrthreshold usr/bin/mrthreshold
 /usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/mrthreshold.1.gz
 usr/lib/mrtrix3/bin/mrtransform usr/bin/mrtransform
 /usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/mrtransform.1.gz
+usr/lib/mrtrix3/bin/mrtrix3.py usr/bin/mrtrix3.py
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/mrtrix3.py.1.gz
+usr/lib/mrtrix3/bin/mrtrix_cleanup usr/bin/mrtrix_cleanup
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/mrtrix_cleanup.1.gz
 usr/lib/mrtrix3/bin/mrview usr/bin/mrview
 /usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/mrview.1.gz
+usr/lib/mrtrix3/bin/mtnormalise usr/bin/mtnormalise
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/mtnormalise.1.gz
+usr/lib/mrtrix3/bin/notfound usr/bin/notfound
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/notfound.1.gz
+usr/lib/mrtrix3/bin/peaks2amp usr/bin/peaks2amp
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/peaks2amp.1.gz
+usr/lib/mrtrix3/bin/peaks2fixel usr/bin/peaks2fixel
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/peaks2fixel.1.gz
+usr/lib/mrtrix3/bin/population_template usr/bin/population_template
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/population_template.1.gz
+usr/lib/mrtrix3/bin/responsemean usr/bin/responsemean
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/responsemean.1.gz
+usr/lib/mrtrix3/bin/sh2amp usr/bin/sh2amp
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/sh2amp.1.gz
+usr/lib/mrtrix3/bin/sh2peaks usr/bin/sh2peaks
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/sh2peaks.1.gz
+usr/lib/mrtrix3/bin/sh2power usr/bin/sh2power
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/sh2power.1.gz
+usr/lib/mrtrix3/bin/sh2response usr/bin/sh2response
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/sh2response.1.gz
+usr/lib/mrtrix3/bin/shbasis usr/bin/shbasis
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/shbasis.1.gz
+usr/lib/mrtrix3/bin/shconv usr/bin/shconv
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/shconv.1.gz
+usr/lib/mrtrix3/bin/shview usr/bin/shview
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/shview.1.gz
+usr/lib/mrtrix3/bin/tck2connectome usr/bin/tck2connectome
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/tck2connectome.1.gz
+usr/lib/mrtrix3/bin/tck2fixel usr/bin/tck2fixel
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/tck2fixel.1.gz
+usr/lib/mrtrix3/bin/tckconvert usr/bin/tckconvert
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/tckconvert.1.gz
+usr/lib/mrtrix3/bin/tckdfc usr/bin/tckdfc
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/tckdfc.1.gz
+usr/lib/mrtrix3/bin/tckedit usr/bin/tckedit
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/tckedit.1.gz
+usr/lib/mrtrix3/bin/tckgen usr/bin/tckgen
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/tckgen.1.gz
+usr/lib/mrtrix3/bin/tckglobal usr/bin/tckglobal
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/tckglobal.1.gz
+usr/lib/mrtrix3/bin/tckinfo usr/bin/tckinfo
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/tckinfo.1.gz
+usr/lib/mrtrix3/bin/tckmap usr/bin/tckmap
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/tckmap.1.gz
+usr/lib/mrtrix3/bin/tckresample usr/bin/tckresample
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/tckresample.1.gz
+usr/lib/mrtrix3/bin/tcksample usr/bin/tcksample
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/tcksample.1.gz
+usr/lib/mrtrix3/bin/tcksift usr/bin/tcksift
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/tcksift.1.gz
+usr/lib/mrtrix3/bin/tcksift2 usr/bin/tcksift2
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/tcksift2.1.gz
+usr/lib/mrtrix3/bin/tckstats usr/bin/tckstats
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/tckstats.1.gz
+usr/lib/mrtrix3/bin/tcktransform usr/bin/tcktransform
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/tcktransform.1.gz
+usr/lib/mrtrix3/bin/tensor2metric usr/bin/tensor2metric
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/tensor2metric.1.gz
+usr/lib/mrtrix3/bin/transformcalc usr/bin/transformcalc
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/transformcalc.1.gz
+usr/lib/mrtrix3/bin/transformcompose usr/bin/transformcompose
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/transformcompose.1.gz
+usr/lib/mrtrix3/bin/transformconvert usr/bin/transformconvert
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/transformconvert.1.gz
+usr/lib/mrtrix3/bin/tsfdivide usr/bin/tsfdivide
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/tsfdivide.1.gz
+usr/lib/mrtrix3/bin/tsfinfo usr/bin/tsfinfo
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/tsfinfo.1.gz
+usr/lib/mrtrix3/bin/tsfmult usr/bin/tsfmult
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/tsfmult.1.gz
+usr/lib/mrtrix3/bin/tsfsmooth usr/bin/tsfsmooth
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/tsfsmooth.1.gz
+usr/lib/mrtrix3/bin/tsfthreshold usr/bin/tsfthreshold
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/tsfthreshold.1.gz
+usr/lib/mrtrix3/bin/tsfvalidate usr/bin/tsfvalidate
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/tsfvalidate.1.gz
+usr/lib/mrtrix3/bin/vectorstats usr/bin/vectorstats
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/vectorstats.1.gz
+usr/lib/mrtrix3/bin/voxel2fixel usr/bin/voxel2fixel
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/voxel2fixel.1.gz
+usr/lib/mrtrix3/bin/voxel2mesh usr/bin/voxel2mesh
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/voxel2mesh.1.gz
+usr/lib/mrtrix3/bin/warp2metric usr/bin/warp2metric
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/warp2metric.1.gz
+usr/lib/mrtrix3/bin/warpconvert usr/bin/warpconvert
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/warpconvert.1.gz
+usr/lib/mrtrix3/bin/warpcorrect usr/bin/warpcorrect
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/warpcorrect.1.gz
+usr/lib/mrtrix3/bin/warpinit usr/bin/warpinit
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/warpinit.1.gz
+usr/lib/mrtrix3/bin/warpinvert usr/bin/warpinvert
+/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/warpinvert.1.gz
 /usr/share/mrtrix3/matlab /usr/share/matlab/site/m/mrtrix
 /usr/share/mrtrix3/matlab /usr/share/octave/site/m/mrtrix


=====================================
debian/rules
=====================================
@@ -50,8 +50,11 @@ override_dh_auto_test:
 override_dh_link:
 	cp debian/mrtrix3.links.in debian/mrtrix3.links
 	: # Generate symlinks for all the mr* commands
-	for f in debian/mrtrix3/usr/lib/mrtrix3/bin/mrview; do \
+	for f in debian/mrtrix3/usr/lib/mrtrix3/bin/*; do \
 		bn=$$(basename $$f); \
+		if [ "$$bn" = "dirsplit" ]; then \
+			continue; \
+		fi; \
 		echo "usr/lib/mrtrix3/bin/$$bn usr/bin/$$bn" >> debian/mrtrix3.links; \
 	    echo "/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/$$bn.1.gz" >> debian/mrtrix3.links; \
 	done
@@ -65,11 +68,12 @@ override_dh_compress:
 	dh_compress -X.html
 
 override_dh_clean:
-	[ -f config ] && ./build clean || true
+	[ -f config ] && python3 ./build clean || true
 	find . -name '*.pyc' -delete
 	-rm clean \
 		config configure.log build.log \
-		core/version.cpp lib/mrtrix3/_version.py src/exec_version.cpp
+		core/version.cpp lib/mrtrix3/_version.py src/exec_version.cpp \
+		icons/mrview.qrc icons/shview.qrc
 	dh_clean
 	@rm -f debian/mrtrix.links
 



View it on GitLab: https://salsa.debian.org/med-team/mrtrix3/-/compare/6509a2f0a5cfc32f62ebe6a454a7d5e43ec93693...a6d1ba6e38ae927d306e7040dd8fb7573d48de12

-- 
View it on GitLab: https://salsa.debian.org/med-team/mrtrix3/-/compare/6509a2f0a5cfc32f62ebe6a454a7d5e43ec93693...a6d1ba6e38ae927d306e7040dd8fb7573d48de12
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