[med-svn] [Git][med-team/kallisto][master] 2 commits: debian/patches/gcc11.patch: Fix gcc-11 FTBFS (Closes: #984073)

[Nilesh Patra]

Nilesh Patra pushed to branch master at Debian Med / kallisto


Commits:
3643b3b2 by Nilesh Patra at 2021-03-04T23:54:26+05:30
debian/patches/gcc11.patch: Fix gcc-11 FTBFS (Closes: #984073)

- - - - -
a1ccc519 by Nilesh Patra at 2021-03-04T23:55:05+05:30
Update changelog

- - - - -


3 changed files:

- debian/changelog
- + debian/patches/gcc11.patch
- debian/patches/series


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,10 @@
+kallisto (0.46.2+dfsg-3) unstable; urgency=medium
+
+  * Team Upload.
+  * debian/patches/gcc11.patch: Fix gcc-11 FTBFS (Closes: #984073)
+
+ -- Nilesh Patra <nilesh at debian.org>  Thu, 04 Mar 2021 23:54:34 +0530
+
 kallisto (0.46.2+dfsg-2) unstable; urgency=medium
 
   * Team upload


=====================================
debian/patches/gcc11.patch
=====================================
@@ -0,0 +1,15 @@
+Description: Fix gcc11 FTBFS with including the required library
+Author: Nilesh Patra <nilesh at debian.org>
+Bug-Debian: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=984073
+Forwarded: https://github.com/pachterlab/kallisto/pull/299
+Last-Update: 2021-03-04
+--- a/src/MinCollector.h
++++ b/src/MinCollector.h
+@@ -7,6 +7,7 @@
+ #include <sstream>
+ #include <vector>
+ #include <unordered_map>
++#include <limits>
+ 
+ #include "KmerIndex.h"
+ #include "weights.h"


=====================================
debian/patches/series
=====================================
@@ -2,3 +2,4 @@ use_debian_packaged_htslib.patch
 spelling
 htslib1.3
 Check_busOptions.seq_length_before_accessing.patch
+gcc11.patch



View it on GitLab: https://salsa.debian.org/med-team/kallisto/-/compare/602218f6adc37645d1268f78fd512ef77311f243...a1ccc5194630a474877de4bad34ce53508312a1c

-- 
View it on GitLab: https://salsa.debian.org/med-team/kallisto/-/compare/602218f6adc37645d1268f78fd512ef77311f243...a1ccc5194630a474877de4bad34ce53508312a1c
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